Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP25718
DateThu Jan 5 11:42:17 GMT 2012
Unique Job ID771327445d5e67cd

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3edeB_
Top template information
PDB header:hydrolase
Chain: B: PDB Molecule:cyclomaltodextrinase;
PDBTitle: structural base for cyclodextrin hydrolysis
Confidence and coverage
Confidence:100.0% Coverage: 73%
492 residues ( 73% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
599 residues ( 89%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MKLAACFLTLLPGFAVAASWTSPGFPAFSEQGTGTFVSHAQLPKGTRPLTLNFDQQCWQP
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Disorder  ?????

?????????????





?????????????????
















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   .........70.........80.........90.........100.........110.........120
Sequence  ADAIKLNQMLSLQPCSNTPPQWRLFRDGEYTLQIDTRSGTPTLMISIQNAAEPVASLVRE
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Disorder  ?
?????




?
???
?





























?
?







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   .........130.........140.........150.........160.........170.........180
Sequence  CPKWDGLPLTVDVSATFPEGAAVRDYYSQQIAIVKNGQIMLQPAATSNGLLLLERAETDT
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?





??????
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   .........190.........200.........210.........220.........230.........240
Sequence  SAPFDWHNATVYFVLTDRFENGDPSNDQSYGRHKDGMAEIGTFHGGDLRGLTNKLDYLQQ
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Disorder  ???
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   .........250.........260.........270.........280.........290.........300
Sequence  LGVNALWISAPFEQIHGWVGGGTKGDFPHYAYHGYYTQDWTNLDANMGNEADLRTLVDSA
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?????????????
































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   .........310.........320.........330.........340.........350.........360
Sequence  HQRGIRILFDVVMNHTGYATLADMQEYQFGALYLSGDEVKKSLGERWSDWKPAAGQTWHS
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?

?


??



?????????











?




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   .........370.........380.........390.........400.........410.........420
Sequence  FNDYINFSDKTGWDKWWGKNWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTTASGLPVF
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   .........430.........440.........450.........460.........470.........480
Sequence  YKNKMDTHAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPAWQQLKTEASAA
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Disorder 





??
???
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   .........490.........500.........510.........520.........530.........540
Sequence  LREWKKANPDKALDDKPFWMTGEAWGHGVMQSDYYRHGFDAMINFDYQEQAAKAVDCLAQ
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   .........550.........560.........570.........580.........590.........600
Sequence  MDTTWQQMAEKLQGFNVLSYLSSHDTRLFREGGDKAAELLLLAPGAVQIFYGDESSRPFG
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   .........610.........620.........630.........640.........650.........660
Sequence  PTGSDPLQGTRSDMNWQDVSGKSAASVAHWQKISQFRARHPAIGAGKQTTLLLKQGYGFV
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Disorder  ????











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   .........670......
Sequence  REHGDDKVLVVWAGQQ
Secondary structure 




SS confidence 















Disorder 












?
?
Disorder confidence 















 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3ede chain B

3D model

Region: 94 - 674
Aligned: 492
Modelled: 510
Confidence: 100.0%
Identity: 22%
PDB header:hydrolase
Chain: B: PDB Molecule:cyclomaltodextrinase;
PDBTitle: structural base for cyclodextrin hydrolysis

Phyre2

PDB 1tcm chain B

3D model

Region: 183 - 673
Aligned: 409
Modelled: 421
Confidence: 100.0%
Identity: 25%
PDB header:glycosyltransferase
Chain: B: PDB Molecule:cyclodextrin glycosyltransferase;
PDBTitle: cyclodextrin glycosyltransferase w616a mutant from bacillus2 circulans strain 251

Phyre2

PDB 3bmw chain A

3D model

Region: 176 - 673
Aligned: 417
Modelled: 428
Confidence: 100.0%
Identity: 25%
PDB header:transferase
Chain: A: PDB Molecule:cyclomaltodextrin glucanotransferase;
PDBTitle: cyclodextrin glycosyl transferase from thermoanerobacterium2 thermosulfurigenes em1 mutant s77p complexed with a maltoheptaose3 inhibitor

Phyre2

PDB 1cyg chain A

3D model

Region: 182 - 673
Aligned: 409
Modelled: 422
Confidence: 100.0%
Identity: 26%
PDB header:glycosyltransferase
Chain: A: PDB Molecule:cyclodextrin glucanotransferase;
PDBTitle: cyclodextrin glucanotransferase (e.c.2.4.1.19) (cgtase)

Phyre2

PDB 1qho chain A

3D model

Region: 182 - 673
Aligned: 414
Modelled: 429
Confidence: 100.0%
Identity: 26%
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: five-domain alpha-amylase from bacillus stearothermophilus,2 maltose/acarbose complex

Phyre2

PDB 1gvi chain A

3D model

Region: 97 - 673
Aligned: 475
Modelled: 491
Confidence: 100.0%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:maltogenic amylase;
PDBTitle: thermus maltogenic amylase in complex with beta-cd

Phyre2

PDB 1jib chain A

3D model

Region: 103 - 673
Aligned: 470
Modelled: 488
Confidence: 100.0%
Identity: 25%
PDB header:hydrolase
Chain: A: PDB Molecule:neopullulanase;
PDBTitle: complex of alpha-amylase ii (tva ii) from thermoactinomyces2 vulgaris r-47 with maltotetraose based on a crystal soaked3 with maltohexaose.

Phyre2

PDB 1ea9 chain D

3D model

Region: 102 - 673
Aligned: 472
Modelled: 480
Confidence: 100.0%
Identity: 26%
PDB header:hydrolase
Chain: D: PDB Molecule:cyclomaltodextrinase;
PDBTitle: cyclomaltodextrinase

Phyre2

PDB 2d0g chain A

3D model

Region: 71 - 673
Aligned: 497
Modelled: 506
Confidence: 100.0%
Identity: 23%
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase i;
PDBTitle: crystal structure of thermoactinomyces vulgaris r-47 alpha-2 amylase 1 (tvai) mutant d356n/e396q complexed with p5, a3 pullulan model oligosaccharide

Phyre2

PDB 3k8k chain B

3D model

Region: 176 - 673
Aligned: 461
Modelled: 464
Confidence: 100.0%
Identity: 26%
PDB header:membrane protein
Chain: B: PDB Molecule:alpha-amylase, susg;
PDBTitle: crystal structure of susg

Phyre2

PDB 3bmv chain A domain 4

3D model

Region: 176 - 645
Aligned: 389
Modelled: 400
Confidence: 100.0%
Identity: 24%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Amylase, catalytic domain

Phyre2

PDB 2wcs chain A

3D model

Region: 180 - 673
Aligned: 393
Modelled: 404
Confidence: 100.0%
Identity: 27%
PDB header:hydrolase
Chain: A: PDB Molecule:alpha amylase, catalytic region;
PDBTitle: crystal structure of debranching enzyme from nostoc2 punctiforme (npde)

Phyre2

PDB 1cgt chain A domain 4

3D model

Region: 178 - 645
Aligned: 386
Modelled: 398
Confidence: 100.0%
Identity: 27%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Amylase, catalytic domain

Phyre2

PDB 2taa chain A

3D model

Region: 181 - 674
Aligned: 395
Modelled: 403
Confidence: 100.0%
Identity: 25%
PDB header:hydrolase (o-glycosyl)
Chain: A: PDB Molecule:taka-amylase a;
PDBTitle: structure and possible catalytic residues of taka-amylase a

Phyre2

PDB 1pam chain A domain 4

3D model

Region: 178 - 645
Aligned: 386
Modelled: 398
Confidence: 100.0%
Identity: 25%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Amylase, catalytic domain

Phyre2

PDB 1h3g chain A domain 3

3D model

Region: 183 - 646
Aligned: 382
Modelled: 382
Confidence: 100.0%
Identity: 25%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Amylase, catalytic domain

Phyre2

PDB 1cxl chain A domain 4

3D model

Region: 178 - 645
Aligned: 386
Modelled: 398
Confidence: 100.0%
Identity: 26%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Amylase, catalytic domain

Phyre2

PDB 2aaa chain A

3D model

Region: 182 - 674
Aligned: 394
Modelled: 406
Confidence: 100.0%
Identity: 23%
PDB header:glycosidase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: calcium binding in alpha-amylases: an x-ray diffraction2 study at 2.1 angstroms resolution of two enzymes from3 aspergillus

Phyre2

PDB 1qho chain A domain 4

3D model

Region: 181 - 645
Aligned: 387
Modelled: 409
Confidence: 100.0%
Identity: 27%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Amylase, catalytic domain

Phyre2

PDB 2guy chain A domain 2

3D model

Region: 181 - 649
Aligned: 370
Modelled: 379
Confidence: 100.0%
Identity: 26%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Amylase, catalytic domain

Phyre2

PDB 3nme chain A

3D model

Region: 18 - 80
Aligned: 57
Modelled: 57
Confidence: 92.4%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:sex4 glucan phosphatase;
PDBTitle: structure of a plant phosphatase

Phyre2
1

c3edeB_
2

c1tcmB_
3

c3bmwA_
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c1cygA_
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c1qhoA_
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c1gviA_
7

c1jibA_
8

c1ea9D_
9

c2d0gA_
10

c3k8kB_
11

d3bmva4
12

c2wcsA_
13

d1cgta4
14

c2taaA_
15

d1pama4
16

d1h3ga3
17

d1cxla4
18

c2aaaA_
19

d1qhoa4
20

d2guya2
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c3nmeA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3edeB_



100.0 22 PDB header:hydrolase
Chain: B: PDB Molecule:cyclomaltodextrinase;
PDBTitle: structural base for cyclodextrin hydrolysis
2c1tcmB_



100.0 25 PDB header:glycosyltransferase
Chain: B: PDB Molecule:cyclodextrin glycosyltransferase;
PDBTitle: cyclodextrin glycosyltransferase w616a mutant from bacillus2 circulans strain 251
3c3bmwA_



100.0 25 PDB header:transferase
Chain: A: PDB Molecule:cyclomaltodextrin glucanotransferase;
PDBTitle: cyclodextrin glycosyl transferase from thermoanerobacterium2 thermosulfurigenes em1 mutant s77p complexed with a maltoheptaose3 inhibitor
4c1cygA_



100.0 26 PDB header:glycosyltransferase
Chain: A: PDB Molecule:cyclodextrin glucanotransferase;
PDBTitle: cyclodextrin glucanotransferase (e.c.2.4.1.19) (cgtase)
5c1qhoA_



100.0 26 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: five-domain alpha-amylase from bacillus stearothermophilus,2 maltose/acarbose complex
6c1gviA_



100.0 24 PDB header:hydrolase
Chain: A: PDB Molecule:maltogenic amylase;
PDBTitle: thermus maltogenic amylase in complex with beta-cd
7c1jibA_



100.0 25 PDB header:hydrolase
Chain: A: PDB Molecule:neopullulanase;
PDBTitle: complex of alpha-amylase ii (tva ii) from thermoactinomyces2 vulgaris r-47 with maltotetraose based on a crystal soaked3 with maltohexaose.
8c1ea9D_



100.0 26 PDB header:hydrolase
Chain: D: PDB Molecule:cyclomaltodextrinase;
PDBTitle: cyclomaltodextrinase
9c2d0gA_



100.0 23 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase i;
PDBTitle: crystal structure of thermoactinomyces vulgaris r-47 alpha-2 amylase 1 (tvai) mutant d356n/e396q complexed with p5, a3 pullulan model oligosaccharide
10c3k8kB_



100.0 26 PDB header:membrane protein
Chain: B: PDB Molecule:alpha-amylase, susg;
PDBTitle: crystal structure of susg
11d3bmva4



100.0 24 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
12c2wcsA_



100.0 27 PDB header:hydrolase
Chain: A: PDB Molecule:alpha amylase, catalytic region;
PDBTitle: crystal structure of debranching enzyme from nostoc2 punctiforme (npde)
13d1cgta4



100.0 27 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
14c2taaA_



100.0 25 PDB header:hydrolase (o-glycosyl)
Chain: A: PDB Molecule:taka-amylase a;
PDBTitle: structure and possible catalytic residues of taka-amylase a
15d1pama4



100.0 25 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
16d1h3ga3



100.0 25 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
17d1cxla4



100.0 26 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
18c2aaaA_



100.0 23 PDB header:glycosidase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: calcium binding in alpha-amylases: an x-ray diffraction2 study at 2.1 angstroms resolution of two enzymes from3 aspergillus
19d1qhoa4



100.0 27 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
20d2guya2



100.0 26 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
21c3k1dA_



not modelled 100.0 18 PDB header:transferase
Chain: A: PDB Molecule:1,4-alpha-glucan-branching enzyme;
PDBTitle: crystal structure of glycogen branching enzyme synonym: 1,4-alpha-d-2 glucan:1,4-alpha-d-glucan 6-glucosyl-transferase from mycobacterium3 tuberculosis h37rv
22d1cyga4



not modelled 100.0 25 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
23d2aaaa2



not modelled 100.0 24 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
24d1gvia3



not modelled 100.0 28 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
25d1wzla3



not modelled 100.0 27 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
26d1ji1a3



not modelled 100.0 27 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
27c2z1kA_



not modelled 100.0 26 PDB header:hydrolase
Chain: A: PDB Molecule:(neo)pullulanase;
PDBTitle: crystal structure of ttha1563 from thermus thermophilus hb8
28c2e8yA_



not modelled 100.0 19 PDB header:hydrolase
Chain: A: PDB Molecule:amyx protein;
PDBTitle: crystal structure of pullulanase type i from bacillus subtilis str.2 168
29c1jgiA_



not modelled 100.0 20 PDB header:transferase
Chain: A: PDB Molecule:amylosucrase;
PDBTitle: crystal structure of the active site mutant glu328gln of2 amylosucrase from neisseria polysaccharea in complex with3 the natural substrate sucrose
30d1j0ha3



not modelled 100.0 27 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
31c3faxA_



not modelled 100.0 19 PDB header:hydrolase
Chain: A: PDB Molecule:reticulocyte binding protein;
PDBTitle: the crystal structure of gbs pullulanase sap in complex with2 maltotetraose
32c1bf2A_



not modelled 100.0 21 PDB header:hydrolase
Chain: A: PDB Molecule:isoamylase;
PDBTitle: structure of pseudomonas isoamylase
33c2ya1A_



not modelled 100.0 19 PDB header:hydrolase
Chain: A: PDB Molecule:putative alkaline amylopullulanase;
PDBTitle: product complex of a multi-modular glycogen-degrading2 pneumococcal virulence factor spua
34c2wanA_



not modelled 100.0 17 PDB header:hydrolase
Chain: A: PDB Molecule:pullulanase;
PDBTitle: pullulanase from bacillus acidopullulyticus
35c2ya0A_



not modelled 100.0 19 PDB header:hydrolase
Chain: A: PDB Molecule:putative alkaline amylopullulanase;
PDBTitle: catalytic module of the multi-modular glycogen-degrading2 pneumococcal virulence factor spua
36d1ea9c3



not modelled 100.0 29 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
37c3ucqA_



not modelled 100.0 21 PDB header:transferase
Chain: A: PDB Molecule:amylosucrase;
PDBTitle: crystal structure of amylosucrase from deinococcus geothermalis
38c3a47A_



not modelled 100.0 21 PDB header:hydrolase
Chain: A: PDB Molecule:oligo-1,6-glucosidase;
PDBTitle: crystal structure of isomaltase from saccharomyces cerevisiae
39c2vncB_



not modelled 100.0 18 PDB header:hydrolase
Chain: B: PDB Molecule:glycogen operon protein glgx;
PDBTitle: crystal structure of glycogen debranching enzyme trex from2 sulfolobus solfataricus
40d2fhfa5



not modelled 100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
41c1uokA_



not modelled 100.0 24 PDB header:glucosidase
Chain: A: PDB Molecule:oligo-1,6-glucosidase;
PDBTitle: crystal structure of b. cereus oligo-1,6-glucosidase
42c3zt5D_



not modelled 100.0 15 PDB header:hydrolase
Chain: D: PDB Molecule:putative glucanohydrolase pep1a;
PDBTitle: glge isoform 1 from streptomyces coelicolor with maltose2 bound
43c1m53A_



not modelled 100.0 24 PDB header:isomerase
Chain: A: PDB Molecule:isomaltulose synthase;
PDBTitle: crystal structure of isomaltulose synthase (pali) from2 klebsiella sp. lx3
44c1zjaB_



not modelled 100.0 24 PDB header:isomerase
Chain: B: PDB Molecule:trehalulose synthase;
PDBTitle: crystal structure of the trehalulose synthase mutb from2 pseudomonas mesoacidophila mx-45 (triclinic form)
45d1m53a2



not modelled 100.0 24 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
46c3m07A_



not modelled 100.0 21 PDB header:unknown function
Chain: A: PDB Molecule:putative alpha amylase;
PDBTitle: 1.4 angstrom resolution crystal structure of putative alpha2 amylase from salmonella typhimurium.
47c1m7xC_



not modelled 100.0 17 PDB header:transferase
Chain: C: PDB Molecule:1,4-alpha-glucan branching enzyme;
PDBTitle: the x-ray crystallographic structure of branching enzyme
48c2wskA_



not modelled 100.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:glycogen debranching enzyme;
PDBTitle: crystal structure of glycogen debranching enzyme glgx from2 escherichia coli k-12
49d1g5aa2



not modelled 100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
50d1uoka2



not modelled 100.0 23 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
51c3czkA_



not modelled 100.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:sucrose hydrolase;
PDBTitle: crystal structure analysis of sucrose hydrolase(suh) e322q-2 sucrose complex
52c2zidA_



not modelled 100.0 24 PDB header:hydrolase
Chain: A: PDB Molecule:dextran glucosidase;
PDBTitle: crystal structure of dextran glucosidase e236q complex with2 isomaltotriose
53c1ehaA_



not modelled 100.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:glycosyltrehalose trehalohydrolase;
PDBTitle: crystal structure of glycosyltrehalose trehalohydrolase2 from sulfolobus solfataricus
54c1wzaA_



not modelled 100.0 27 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase a;
PDBTitle: crystal structure of alpha-amylase from h.orenii
55d1bf2a3



not modelled 100.0 22 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
56c2gdvA_



not modelled 100.0 14 PDB header:transferase
Chain: A: PDB Molecule:sucrose phosphorylase;
PDBTitle: sucrose phosphorylase from bifidobacterium adolescentis2 reacted with sucrose
57c2ze0A_



not modelled 100.0 27 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-glucosidase;
PDBTitle: alpha-glucosidase gsj
58c2fhfA_



not modelled 100.0 19 PDB header:hydrolase
Chain: A: PDB Molecule:pullulanase;
PDBTitle: crystal structure analysis of klebsiella pneumoniae2 pullulanase complexed with maltotetraose
59c1gjuA_



not modelled 100.0 13 PDB header:transferase
Chain: A: PDB Molecule:maltodextrin glycosyltransferase;
PDBTitle: maltosyltransferase from thermotoga maritima
60c3amkA_



not modelled 100.0 18 PDB header:transferase
Chain: A: PDB Molecule:os06g0726400 protein;
PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l
61c3amlA_



not modelled 100.0 19 PDB header:transferase
Chain: A: PDB Molecule:os06g0726400 protein;
PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l
62c2qpuB_



not modelled 100.0 22 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-amylase type a isozyme;
PDBTitle: sugar tongs mutant s378p in complex with acarbose
63c2by0A_



not modelled 100.0 21 PDB header:hydrolase
Chain: A: PDB Molecule:maltooligosyltrehalose trehalohydrolase;
PDBTitle: is radiation damage dependent on the dose-rate used during2 macromolecular crystallography data collection
64d1wzaa2



not modelled 100.0 27 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
65c1lwhA_



not modelled 100.0 24 PDB header:transferase
Chain: A: PDB Molecule:4-alpha-glucanotransferase;
PDBTitle: crystal structure of t. maritima 4-alpha-glucanotransferase
66c2x4bA_



not modelled 100.0 19 PDB header:hydrolase
Chain: A: PDB Molecule:limit dextrinase;
PDBTitle: barley limit dextrinase in complex with beta-cyclodextrin
67d1lwha2



not modelled 100.0 25 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
68c3dhuC_



not modelled 100.0 23 PDB header:hydrolase
Chain: C: PDB Molecule:alpha-amylase;
PDBTitle: crystal structure of an alpha-amylase from lactobacillus2 plantarum
69c1e40A_



not modelled 100.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: tris/maltotriose complex of chimaeric amylase from b.2 amyloliquefaciens and b. licheniformis at 2.2a
70c1wpcA_



not modelled 100.0 22 PDB header:hydrolase
Chain: A: PDB Molecule:glucan 1,4-alpha-maltohexaosidase;
PDBTitle: crystal structure of maltohexaose-producing amylase complexed with2 pseudo-maltononaose
71c1ud8A_



not modelled 100.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:amylase;
PDBTitle: crystal structure of amyk38 with lithium ion
72d1gjwa2



not modelled 100.0 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
73c1hvxA_



not modelled 100.0 24 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: bacillus stearothermophilus alpha-amylase
74c2dh3A_



not modelled 100.0 22 PDB header:transport protein, signaling protein
Chain: A: PDB Molecule:4f2 cell-surface antigen heavy chain;
PDBTitle: crystal structure of human ed-4f2hc
75d1m7xa3



not modelled 100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
76c1jdaA_



not modelled 100.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:1,4-alpha maltotetrahydrolase;
PDBTitle: maltotetraose-forming exo-amylase
77c1gcyA_



not modelled 100.0 21 PDB header:hydrolase
Chain: A: PDB Molecule:glucan 1,4-alpha-maltotetrahydrolase;
PDBTitle: high resolution crystal structure of maltotetraose-forming2 exo-amylase
78c1jaeA_



not modelled 100.0 18 PDB header:glycosidase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: structure of tenebrio molitor larval alpha-amylase
79c3bc9A_



not modelled 100.0 13 PDB header:hydrolase
Chain: A: PDB Molecule:alpha amylase, catalytic region;
PDBTitle: alpha-amylase b in complex with acarbose
80d2bhua3



not modelled 100.0 24 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
81d1ob0a2



not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
82c3blpX_



not modelled 100.0 18 PDB header:hydrolase
Chain: X: PDB Molecule:alpha-amylase 1;
PDBTitle: role of aromatic residues in human salivary alpha-amylase
83c1bagA_



not modelled 100.0 19 PDB header:alpha-amylase
Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase;
PDBTitle: alpha-amylase from bacillus subtilis complexed with2 maltopentaose
84c1jd7A_



not modelled 100.0 18 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: crystal structure analysis of the mutant k300r of2 pseudoalteromonas haloplanctis alpha-amylase
85d1mxga2



not modelled 100.0 22 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
86d1eh9a3



not modelled 100.0 24 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
87c1mwoA_



not modelled 100.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:alpha amylase;
PDBTitle: crystal structure analysis of the hyperthermostable2 pyrocoocus woesei alpha-amylase
88d1r7aa2



not modelled 100.0 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
89d1ud2a2



not modelled 100.0 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
90d1e43a2



not modelled 100.0 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
91d2gjpa2



not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
92d1hvxa2



not modelled 100.0 22 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
93d1gcya2



not modelled 100.0 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
94d1avaa2



not modelled 100.0 24 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
95d2d3na2



not modelled 100.0 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
96d1ua7a2



not modelled 100.0 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
97d1ht6a2



not modelled 100.0 22 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
98d1jaea2



not modelled 100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
99d1g94a2



not modelled 100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
100d1hx0a2



not modelled 100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
101c1iv8A_



not modelled 100.0 22 PDB header:isomerase
Chain: A: PDB Molecule:maltooligosyl trehalose synthase;
PDBTitle: crystal structure of maltooligosyl trehalose synthase
102d3dhpa2



not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
103c3hjeA_



not modelled 100.0 19 PDB header:transferase
Chain: A: PDB Molecule:704aa long hypothetical glycosyltransferase;
PDBTitle: crystal structure of sulfolobus tokodaii hypothetical2 maltooligosyl trehalose synthase
104c1bplB_



not modelled 100.0 18 PDB header:glycosyltransferase
Chain: B: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase;
PDBTitle: glycosyltransferase
105d1iv8a2



not modelled 100.0 23 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
106c1bplA_



not modelled 99.9 38 PDB header:glycosyltransferase
Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase;
PDBTitle: glycosyltransferase
107c3aicC_



not modelled 99.7 16 PDB header:transferase
Chain: C: PDB Molecule:glucosyltransferase-si;
PDBTitle: crystal structure of glucansucrase from streptococcus mutans
108c3hz3A_



not modelled 99.0 15 PDB header:transferase
Chain: A: PDB Molecule:glucansucrase;
PDBTitle: lactobacillus reuteri n-terminally truncated glucansucrase2 gtf180(d1025n)-sucrose complex
109c2yfnA_



not modelled 98.7 14 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase-sucrose kinase agask;
PDBTitle: galactosidase domain of alpha-galactosidase-sucrose kinase,2 agask
110c2xn1B_



not modelled 98.5 15 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-galactosidase;
PDBTitle: structure of alpha-galactosidase from lactobacillus acidophilus ncfm2 with tris
111c3mi6A_



not modelled 98.5 15 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of the alpha-galactosidase from lactobacillus2 brevis, northeast structural genomics consortium target lbr11.
112d2f2ha4



not modelled 98.3 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:YicI catalytic domain-like
113d1uuqa_



not modelled 97.8 24 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
114c1uz4A_



not modelled 97.8 24 PDB header:hydrolase
Chain: A: PDB Molecule:man5a;
PDBTitle: common inhibition of beta-glucosidase and beta-mannosidase2 by isofagomine lactam reflects different conformational3 intineraries for glucoside and mannoside hydrolysis
115d1edga_



not modelled 97.7 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases
116c3civA_



not modelled 97.6 15 PDB header:hydrolase
Chain: A: PDB Molecule:endo-beta-1,4-mannanase;
PDBTitle: crystal structure of the endo-beta-1,4-mannanase from2 alicyclobacillus acidocaldarius
117c1zy9A_



not modelled 97.6 11 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of alpha-galactosidase (ec 3.2.1.22) (melibiase)2 (tm1192) from thermotoga maritima at 2.34 a resolution
118c3pzqA_



not modelled 97.5 23 PDB header:hydrolase
Chain: A: PDB Molecule:mannan endo-1,4-beta-mannosidase. glycosyl hydrolase family
PDBTitle: structure of the hyperthermostable endo-1,4-beta-d-mannanase from2 thermotoga petrophila rku-1 with maltose and glycerol
119d1zy9a2



not modelled 97.5 10 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:YicI catalytic domain-like
120d2pb1a1



not modelled 97.5 26 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-glycanases

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0