Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: d1r7aa2

Fold library idFoldSuperfamilyFamily
d1r7aa2TIM beta/alpha-barrel(Trans)glycosidasesAmylase, catalytic domain


Added to library: Tue Mar 16 12:36:45 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MKNKVQLITYADRLGDGTIKSMTDILRTRFDGVYDGVHILPFFTPFDGADAGFDPIDHTKVDERLGSWDD
Predicted secondary structure











































SS confidence





































































Known secondary structure (DSSP)

SS

SSSBSSSSSTTT





SSSSSTTSS
S
TTT

 .........80.........90.........100.........110.........120.........130.........140
Sequence VAELSKTHNIMVDAIVNHMSWESKQFQDVLAKGEESEYYPMFLTMSSVFPNGATEEDLAGIYRPRPGLPF
Predicted secondary structure














































SS confidence





































































Known secondary structure (DSSP) TTS
STTSGGGSTTGGGB
B
TT


TS

SSSS
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence THYKFAGKTRLVWVSFTPQQVDIDTDSDKGWEYLMSIFDQMAASHVSYIRLDAVGYGAKEAGTSCFMTPK
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP) TT
SSSTTB
TTSTT

TGGGS


TTS
SSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence TFKLISRLREEGVKRGLEILIEVHSYYKKQVEIASKVDRVYDFALPPLLLHALSTGHVEPVAHWTDIRPN
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP) TT



S
TTSS
S


S
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence NAVTVLDTHDGIGVIDIGSDQLDRSLKGLVPDEDVDNLVNTIHANTHGESQAATGAAASNLDLYQVNSTY
Predicted secondary structure








































SS confidence





































































Known secondary structure (DSSP) S
S

SS
B
STTTS

SS
TTS

SS
TTTSGGGSB
S
SSSB
S
 .........360.........370.........380.........390.........400.........410.........420
Sequence YSALGNDQHYIAARAVQFFLPGVPQVYYVGALAGKNDMELLRKTNNGRDINRHYYSTAEIDENLKRPVVK
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) T

SSSTT




BGGGGG


B
TTS
 .........430...
Sequence ALNALAKFRNELD
Predicted secondary structure

SS confidence












Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction
Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg  
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D