Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP15067
DateThu Jan 5 11:34:29 GMT 2012
Unique Job ID4cb4e8ab70177e26

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2wskA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:glycogen debranching enzyme;
PDBTitle: crystal structure of glycogen debranching enzyme glgx from2 escherichia coli k-12
Confidence and coverage
Confidence:100.0% Coverage:100%
654 residues (100% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MTQLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANGQEHRYDLPGHSGDIWHGY
Secondary structure 
SS confidence 
Disorder  ???????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  LPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQIDGEFKDNPLLHAGHNEPDYR
Secondary structure 
SS confidence 
Disorder 
?
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  DNAAIAPKCVVVVDHYDWEDDAPPRTPWGSTIIYEAHVKGLTYLHPEIPVEIRGTYKALG
Secondary structure 
SS confidence 
Disorder  ???
???????
????????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  HPVMINYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPVAMFALHPAYACSPETA
Secondary structure 
SS confidence 
Disorder 
????
?
?
?
?????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  LDEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPLFSLRGIDNRSYYWIREDGDYHNWT
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  GCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFDLAAVMGRTPEFRQDAPLFTAIQNC
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  PVLSQVKLIAEPWDIAPGGYQVGNFPPLFAEWNDHFRDAARRFWLHYDLPLGAFAGRFAA
Secondary structure 
SS confidence 
Disorder 
????
?
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  SSDVFKRNGRLPSAAINLVTAHDGFTLRDCVCFNHKHNEANGEENRDGTNNNYSNNHGKE
Secondary structure 
SS confidence 
Disorder 
??????
?
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  GLGGSLDLVERRRDSIHALLTTLLLSQGTPMLLAGDEHGHSQHGNNNAYCQDNQLTWLDW
Secondary structure 
SS confidence 
Disorder 
????
?
??
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  SQASSGLTAFTAALIHLRKRIPALVENRWWEEGDGNVRWLNRYAQPLSTDEWQNGPKQLQ
Secondary structure 
SS confidence 
Disorder 
?
??
??
Disorder confidence 
 
   .........610.........620.........630.........640.........650.......
Sequence  ILLSDRFLIAINATLEVTEIVLPAGEWHAIPPFAGEDNPVITAVWQGPAHGLCVFQR
Secondary structure 
SS confidence 
Disorder 
????????
?
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2wsk chain A

3D model

Region: 4 - 657
Aligned: 654
Modelled: 654
Confidence: 100.0%
Identity: 100%
PDB header:hydrolase
Chain: A: PDB Molecule:glycogen debranching enzyme;
PDBTitle: crystal structure of glycogen debranching enzyme glgx from2 escherichia coli k-12

Phyre2

PDB 2vnc chain B

3D model

Region: 2 - 657
Aligned: 638
Modelled: 638
Confidence: 100.0%
Identity: 43%
PDB header:hydrolase
Chain: B: PDB Molecule:glycogen operon protein glgx;
PDBTitle: crystal structure of glycogen debranching enzyme trex from2 sulfolobus solfataricus

Phyre2

PDB 1bf2 chain A

3D model

Region: 8 - 656
Aligned: 641
Modelled: 647
Confidence: 100.0%
Identity: 31%
PDB header:hydrolase
Chain: A: PDB Molecule:isoamylase;
PDBTitle: structure of pseudomonas isoamylase

Phyre2

PDB 2fhf chain A

3D model

Region: 6 - 657
Aligned: 603
Modelled: 624
Confidence: 100.0%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:pullulanase;
PDBTitle: crystal structure analysis of klebsiella pneumoniae2 pullulanase complexed with maltotetraose

Phyre2

PDB 2e8y chain A

3D model

Region: 11 - 656
Aligned: 570
Modelled: 596
Confidence: 100.0%
Identity: 25%
PDB header:hydrolase
Chain: A: PDB Molecule:amyx protein;
PDBTitle: crystal structure of pullulanase type i from bacillus subtilis str.2 168

Phyre2

PDB 2x4b chain A

3D model

Region: 11 - 655
Aligned: 594
Modelled: 604
Confidence: 100.0%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:limit dextrinase;
PDBTitle: barley limit dextrinase in complex with beta-cyclodextrin

Phyre2

PDB 2wan chain A

3D model

Region: 11 - 657
Aligned: 569
Modelled: 592
Confidence: 100.0%
Identity: 26%
PDB header:hydrolase
Chain: A: PDB Molecule:pullulanase;
PDBTitle: pullulanase from bacillus acidopullulyticus

Phyre2

PDB 3fax chain A

3D model

Region: 11 - 656
Aligned: 580
Modelled: 603
Confidence: 100.0%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:reticulocyte binding protein;
PDBTitle: the crystal structure of gbs pullulanase sap in complex with2 maltotetraose

Phyre2

PDB 2ya1 chain A

3D model

Region: 11 - 656
Aligned: 586
Modelled: 613
Confidence: 100.0%
Identity: 25%
PDB header:hydrolase
Chain: A: PDB Molecule:putative alkaline amylopullulanase;
PDBTitle: product complex of a multi-modular glycogen-degrading2 pneumococcal virulence factor spua

Phyre2

PDB 2ya0 chain A

3D model

Region: 11 - 656
Aligned: 586
Modelled: 616
Confidence: 100.0%
Identity: 25%
PDB header:hydrolase
Chain: A: PDB Molecule:putative alkaline amylopullulanase;
PDBTitle: catalytic module of the multi-modular glycogen-degrading2 pneumococcal virulence factor spua

Phyre2

PDB 3k1d chain A

3D model

Region: 12 - 656
Aligned: 536
Modelled: 580
Confidence: 100.0%
Identity: 23%
PDB header:transferase
Chain: A: PDB Molecule:1,4-alpha-glucan-branching enzyme;
PDBTitle: crystal structure of glycogen branching enzyme synonym: 1,4-alpha-d-2 glucan:1,4-alpha-d-glucan 6-glucosyl-transferase from mycobacterium3 tuberculosis h37rv

Phyre2

PDB 3aml chain A

3D model

Region: 1 - 657
Aligned: 572
Modelled: 610
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:os06g0726400 protein;
PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l

Phyre2

PDB 3amk chain A

3D model

Region: 3 - 657
Aligned: 564
Modelled: 593
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:os06g0726400 protein;
PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l

Phyre2

PDB 3m07 chain A

3D model

Region: 8 - 655
Aligned: 521
Modelled: 548
Confidence: 100.0%
Identity: 27%
PDB header:unknown function
Chain: A: PDB Molecule:putative alpha amylase;
PDBTitle: 1.4 angstrom resolution crystal structure of putative alpha2 amylase from salmonella typhimurium.

Phyre2

PDB 1m7x chain C

3D model

Region: 7 - 657
Aligned: 532
Modelled: 569
Confidence: 100.0%
Identity: 21%
PDB header:transferase
Chain: C: PDB Molecule:1,4-alpha-glucan branching enzyme;
PDBTitle: the x-ray crystallographic structure of branching enzyme

Phyre2

PDB 1eha chain A

3D model

Region: 12 - 656
Aligned: 508
Modelled: 534
Confidence: 100.0%
Identity: 23%
PDB header:hydrolase
Chain: A: PDB Molecule:glycosyltrehalose trehalohydrolase;
PDBTitle: crystal structure of glycosyltrehalose trehalohydrolase2 from sulfolobus solfataricus

Phyre2

PDB 2by0 chain A

3D model

Region: 5 - 654
Aligned: 533
Modelled: 567
Confidence: 100.0%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:maltooligosyltrehalose trehalohydrolase;
PDBTitle: is radiation damage dependent on the dose-rate used during2 macromolecular crystallography data collection

Phyre2

PDB 1ea9 chain D

3D model

Region: 11 - 657
Aligned: 528
Modelled: 566
Confidence: 100.0%
Identity: 19%
PDB header:hydrolase
Chain: D: PDB Molecule:cyclomaltodextrinase;
PDBTitle: cyclomaltodextrinase

Phyre2

PDB 1jib chain A

3D model

Region: 11 - 657
Aligned: 525
Modelled: 563
Confidence: 100.0%
Identity: 22%
PDB header:hydrolase
Chain: A: PDB Molecule:neopullulanase;
PDBTitle: complex of alpha-amylase ii (tva ii) from thermoactinomyces2 vulgaris r-47 with maltotetraose based on a crystal soaked3 with maltohexaose.

Phyre2

PDB 1gvi chain A

3D model

Region: 11 - 656
Aligned: 528
Modelled: 566
Confidence: 100.0%
Identity: 23%
PDB header:hydrolase
Chain: A: PDB Molecule:maltogenic amylase;
PDBTitle: thermus maltogenic amylase in complex with beta-cd

Phyre2
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c2wskA_
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c2vncB_
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c1bf2A_
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c2fhfA_
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c2e8yA_
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c2x4bA_
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c2wanA_
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c3faxA_
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c2ya1A_
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c2ya0A_
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c3k1dA_
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c3amlA_
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c3amkA_
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c3m07A_
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c1m7xC_
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c1ehaA_
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c1ea9D_
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c1jibA_
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c1gviA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2wskA_
100.0 100 PDB header:hydrolase
Chain: A: PDB Molecule:glycogen debranching enzyme;
PDBTitle: crystal structure of glycogen debranching enzyme glgx from2 escherichia coli k-12
2c2vncB_
100.0 43 PDB header:hydrolase
Chain: B: PDB Molecule:glycogen operon protein glgx;
PDBTitle: crystal structure of glycogen debranching enzyme trex from2 sulfolobus solfataricus
3c1bf2A_
100.0 31 PDB header:hydrolase
Chain: A: PDB Molecule:isoamylase;
PDBTitle: structure of pseudomonas isoamylase
4c2fhfA_
100.0 24 PDB header:hydrolase
Chain: A: PDB Molecule:pullulanase;
PDBTitle: crystal structure analysis of klebsiella pneumoniae2 pullulanase complexed with maltotetraose
5c2e8yA_
100.0 25 PDB header:hydrolase
Chain: A: PDB Molecule:amyx protein;
PDBTitle: crystal structure of pullulanase type i from bacillus subtilis str.2 168
6c2x4bA_
100.0 24 PDB header:hydrolase
Chain: A: PDB Molecule:limit dextrinase;
PDBTitle: barley limit dextrinase in complex with beta-cyclodextrin
7c2wanA_
100.0 26 PDB header:hydrolase
Chain: A: PDB Molecule:pullulanase;
PDBTitle: pullulanase from bacillus acidopullulyticus
8c3faxA_
100.0 24 PDB header:hydrolase
Chain: A: PDB Molecule:reticulocyte binding protein;
PDBTitle: the crystal structure of gbs pullulanase sap in complex with2 maltotetraose
9c2ya1A_
100.0 25 PDB header:hydrolase
Chain: A: PDB Molecule:putative alkaline amylopullulanase;
PDBTitle: product complex of a multi-modular glycogen-degrading2 pneumococcal virulence factor spua
10c2ya0A_
100.0 25 PDB header:hydrolase
Chain: A: PDB Molecule:putative alkaline amylopullulanase;
PDBTitle: catalytic module of the multi-modular glycogen-degrading2 pneumococcal virulence factor spua
11c3k1dA_
100.0 23 PDB header:transferase
Chain: A: PDB Molecule:1,4-alpha-glucan-branching enzyme;
PDBTitle: crystal structure of glycogen branching enzyme synonym: 1,4-alpha-d-2 glucan:1,4-alpha-d-glucan 6-glucosyl-transferase from mycobacterium3 tuberculosis h37rv
12c3amlA_
100.0 15 PDB header:transferase
Chain: A: PDB Molecule:os06g0726400 protein;
PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l
13c3amkA_
100.0 15 PDB header:transferase
Chain: A: PDB Molecule:os06g0726400 protein;
PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l
14c3m07A_
100.0 27 PDB header:unknown function
Chain: A: PDB Molecule:putative alpha amylase;
PDBTitle: 1.4 angstrom resolution crystal structure of putative alpha2 amylase from salmonella typhimurium.
15c1m7xC_
100.0 21 PDB header:transferase
Chain: C: PDB Molecule:1,4-alpha-glucan branching enzyme;
PDBTitle: the x-ray crystallographic structure of branching enzyme
16c1ehaA_
100.0 23 PDB header:hydrolase
Chain: A: PDB Molecule:glycosyltrehalose trehalohydrolase;
PDBTitle: crystal structure of glycosyltrehalose trehalohydrolase2 from sulfolobus solfataricus
17c2by0A_
100.0 24 PDB header:hydrolase
Chain: A: PDB Molecule:maltooligosyltrehalose trehalohydrolase;
PDBTitle: is radiation damage dependent on the dose-rate used during2 macromolecular crystallography data collection
18c1ea9D_
100.0 19 PDB header:hydrolase
Chain: D: PDB Molecule:cyclomaltodextrinase;
PDBTitle: cyclomaltodextrinase
19c1jibA_
100.0 22 PDB header:hydrolase
Chain: A: PDB Molecule:neopullulanase;
PDBTitle: complex of alpha-amylase ii (tva ii) from thermoactinomyces2 vulgaris r-47 with maltotetraose based on a crystal soaked3 with maltohexaose.
20c1gviA_
100.0 23 PDB header:hydrolase
Chain: A: PDB Molecule:maltogenic amylase;
PDBTitle: thermus maltogenic amylase in complex with beta-cd
21c2d0gA_
not modelled 100.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase i;
PDBTitle: crystal structure of thermoactinomyces vulgaris r-47 alpha-2 amylase 1 (tvai) mutant d356n/e396q complexed with p5, a3 pullulan model oligosaccharide
22d2fhfa5
not modelled 100.0 27 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
23d1bf2a3
not modelled 100.0 34 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
24c3edeB_
not modelled 100.0 15 PDB header:hydrolase
Chain: B: PDB Molecule:cyclomaltodextrinase;
PDBTitle: structural base for cyclodextrin hydrolysis
25c3czkA_
not modelled 100.0 21 PDB header:hydrolase
Chain: A: PDB Molecule:sucrose hydrolase;
PDBTitle: crystal structure analysis of sucrose hydrolase(suh) e322q-2 sucrose complex
26c1jgiA_
not modelled 100.0 20 PDB header:transferase
Chain: A: PDB Molecule:amylosucrase;
PDBTitle: crystal structure of the active site mutant glu328gln of2 amylosucrase from neisseria polysaccharea in complex with3 the natural substrate sucrose
27c3zt5D_
not modelled 100.0 18 PDB header:hydrolase
Chain: D: PDB Molecule:putative glucanohydrolase pep1a;
PDBTitle: glge isoform 1 from streptomyces coelicolor with maltose2 bound
28c3bmwA_
not modelled 100.0 19 PDB header:transferase
Chain: A: PDB Molecule:cyclomaltodextrin glucanotransferase;
PDBTitle: cyclodextrin glycosyl transferase from thermoanerobacterium2 thermosulfurigenes em1 mutant s77p complexed with a maltoheptaose3 inhibitor
29c2wcsA_
not modelled 100.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:alpha amylase, catalytic region;
PDBTitle: crystal structure of debranching enzyme from nostoc2 punctiforme (npde)
30c3k8kB_
not modelled 100.0 19 PDB header:membrane protein
Chain: B: PDB Molecule:alpha-amylase, susg;
PDBTitle: crystal structure of susg
31c1tcmB_
not modelled 100.0 22 PDB header:glycosyltransferase
Chain: B: PDB Molecule:cyclodextrin glycosyltransferase;
PDBTitle: cyclodextrin glycosyltransferase w616a mutant from bacillus2 circulans strain 251
32c1qhoA_
not modelled 100.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: five-domain alpha-amylase from bacillus stearothermophilus,2 maltose/acarbose complex
33c1cygA_
not modelled 100.0 18 PDB header:glycosyltransferase
Chain: A: PDB Molecule:cyclodextrin glucanotransferase;
PDBTitle: cyclodextrin glucanotransferase (e.c.2.4.1.19) (cgtase)
34c3a47A_
not modelled 100.0 18 PDB header:hydrolase
Chain: A: PDB Molecule:oligo-1,6-glucosidase;
PDBTitle: crystal structure of isomaltase from saccharomyces cerevisiae
35c3ucqA_
not modelled 100.0 19 PDB header:transferase
Chain: A: PDB Molecule:amylosucrase;
PDBTitle: crystal structure of amylosucrase from deinococcus geothermalis
36c1m53A_
not modelled 100.0 20 PDB header:isomerase
Chain: A: PDB Molecule:isomaltulose synthase;
PDBTitle: crystal structure of isomaltulose synthase (pali) from2 klebsiella sp. lx3
37c1zjaB_
not modelled 100.0 23 PDB header:isomerase
Chain: B: PDB Molecule:trehalulose synthase;
PDBTitle: crystal structure of the trehalulose synthase mutb from2 pseudomonas mesoacidophila mx-45 (triclinic form)
38c1uokA_
not modelled 100.0 18 PDB header:glucosidase
Chain: A: PDB Molecule:oligo-1,6-glucosidase;
PDBTitle: crystal structure of b. cereus oligo-1,6-glucosidase
39c1wzaA_
not modelled 100.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase a;
PDBTitle: crystal structure of alpha-amylase from h.orenii
40c1gjuA_
not modelled 100.0 20 PDB header:transferase
Chain: A: PDB Molecule:maltodextrin glycosyltransferase;
PDBTitle: maltosyltransferase from thermotoga maritima
41d1g5aa2
not modelled 100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
42c2zidA_
not modelled 100.0 18 PDB header:hydrolase
Chain: A: PDB Molecule:dextran glucosidase;
PDBTitle: crystal structure of dextran glucosidase e236q complex with2 isomaltotriose
43c2aaaA_
not modelled 100.0 15 PDB header:glycosidase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: calcium binding in alpha-amylases: an x-ray diffraction2 study at 2.1 angstroms resolution of two enzymes from3 aspergillus
44c2taaA_
not modelled 100.0 15 PDB header:hydrolase (o-glycosyl)
Chain: A: PDB Molecule:taka-amylase a;
PDBTitle: structure and possible catalytic residues of taka-amylase a
45c2ze0A_
not modelled 100.0 17 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-glucosidase;
PDBTitle: alpha-glucosidase gsj
46c2z1kA_
not modelled 100.0 21 PDB header:hydrolase
Chain: A: PDB Molecule:(neo)pullulanase;
PDBTitle: crystal structure of ttha1563 from thermus thermophilus hb8
47d3bmva4
not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
48d1m7xa3
not modelled 100.0 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
49d1gvia3
not modelled 100.0 26 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
50d1wzla3
not modelled 100.0 25 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
51d2bhua3
not modelled 100.0 25 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
52c3dhuC_
not modelled 100.0 18 PDB header:hydrolase
Chain: C: PDB Molecule:alpha-amylase;
PDBTitle: crystal structure of an alpha-amylase from lactobacillus2 plantarum
53d1ea9c3
not modelled 100.0 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
54d1pama4
not modelled 100.0 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
55d1j0ha3
not modelled 100.0 24 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
56c1lwhA_
not modelled 100.0 22 PDB header:transferase
Chain: A: PDB Molecule:4-alpha-glucanotransferase;
PDBTitle: crystal structure of t. maritima 4-alpha-glucanotransferase
57d1cxla4
not modelled 100.0 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
58d1m53a2
not modelled 100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
59d1qhoa4
not modelled 100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
60d2guya2
not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
61d1cyga4
not modelled 100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
62d2aaaa2
not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
63d1cgta4
not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
64d1gjwa2
not modelled 100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
65d1eh9a3
not modelled 100.0 27 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
66d1uoka2
not modelled 100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
67d1lwha2
not modelled 100.0 25 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
68d1h3ga3
not modelled 100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
69c1bagA_
not modelled 100.0 16 PDB header:alpha-amylase
Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase;
PDBTitle: alpha-amylase from bacillus subtilis complexed with2 maltopentaose
70c1jaeA_
not modelled 100.0 16 PDB header:glycosidase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: structure of tenebrio molitor larval alpha-amylase
71d1wzaa2
not modelled 100.0 23 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
72c1ud8A_
not modelled 100.0 16 PDB header:hydrolase
Chain: A: PDB Molecule:amylase;
PDBTitle: crystal structure of amyk38 with lithium ion
73c1e40A_
not modelled 100.0 19 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: tris/maltotriose complex of chimaeric amylase from b.2 amyloliquefaciens and b. licheniformis at 2.2a
74c2gdvA_
not modelled 100.0 12 PDB header:transferase
Chain: A: PDB Molecule:sucrose phosphorylase;
PDBTitle: sucrose phosphorylase from bifidobacterium adolescentis2 reacted with sucrose
75c1hvxA_
not modelled 100.0 18 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: bacillus stearothermophilus alpha-amylase
76c2qpuB_
not modelled 100.0 19 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-amylase type a isozyme;
PDBTitle: sugar tongs mutant s378p in complex with acarbose
77c1jd7A_
not modelled 100.0 16 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: crystal structure analysis of the mutant k300r of2 pseudoalteromonas haloplanctis alpha-amylase
78c3blpX_
not modelled 100.0 15 PDB header:hydrolase
Chain: X: PDB Molecule:alpha-amylase 1;
PDBTitle: role of aromatic residues in human salivary alpha-amylase
79c1wpcA_
not modelled 100.0 19 PDB header:hydrolase
Chain: A: PDB Molecule:glucan 1,4-alpha-maltohexaosidase;
PDBTitle: crystal structure of maltohexaose-producing amylase complexed with2 pseudo-maltononaose
80d1ji1a3
not modelled 100.0 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
81c2dh3A_
not modelled 100.0 18 PDB header:transport protein, signaling protein
Chain: A: PDB Molecule:4f2 cell-surface antigen heavy chain;
PDBTitle: crystal structure of human ed-4f2hc
82c1gcyA_
not modelled 100.0 17 PDB header:hydrolase
Chain: A: PDB Molecule:glucan 1,4-alpha-maltotetrahydrolase;
PDBTitle: high resolution crystal structure of maltotetraose-forming2 exo-amylase
83c1jdaA_
not modelled 100.0 17 PDB header:hydrolase
Chain: A: PDB Molecule:1,4-alpha maltotetrahydrolase;
PDBTitle: maltotetraose-forming exo-amylase
84d1r7aa2
not modelled 100.0 12 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
85c3bc9A_
not modelled 100.0 16 PDB header:hydrolase
Chain: A: PDB Molecule:alpha amylase, catalytic region;
PDBTitle: alpha-amylase b in complex with acarbose
86c1mwoA_
not modelled 100.0 17 PDB header:hydrolase
Chain: A: PDB Molecule:alpha amylase;
PDBTitle: crystal structure analysis of the hyperthermostable2 pyrocoocus woesei alpha-amylase
87d1ua7a2
not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
88d1gcya2
not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
89d1avaa2
not modelled 100.0 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
90d1e43a2
not modelled 100.0 22 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
91d1ob0a2
not modelled 100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
92d2gjpa2
not modelled 100.0 23 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
93d1ud2a2
not modelled 100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
94d1jaea2
not modelled 100.0 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
95d1hvxa2
not modelled 100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
96d2d3na2
not modelled 100.0 24 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
97d1g94a2
not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
98d1ht6a2
not modelled 100.0 23 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
99d1mxga2
not modelled 100.0 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
100d1hx0a2
not modelled 100.0 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
101d3dhpa2
not modelled 100.0 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
102c1iv8A_
not modelled 100.0 20 PDB header:isomerase
Chain: A: PDB Molecule:maltooligosyl trehalose synthase;
PDBTitle: crystal structure of maltooligosyl trehalose synthase
103c3hjeA_
not modelled 100.0 20 PDB header:transferase
Chain: A: PDB Molecule:704aa long hypothetical glycosyltransferase;
PDBTitle: crystal structure of sulfolobus tokodaii hypothetical2 maltooligosyl trehalose synthase
104c1bplB_
not modelled 100.0 14 PDB header:glycosyltransferase
Chain: B: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase;
PDBTitle: glycosyltransferase
105d1iv8a2
not modelled 100.0 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
106c1bplA_
not modelled 99.9 25 PDB header:glycosyltransferase
Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase;
PDBTitle: glycosyltransferase
107d1bf2a1
not modelled 99.9 34 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
108d2fhfa1
not modelled 99.8 17 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
109d1m7xa1
not modelled 99.7 25 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
110c3aicC_
not modelled 99.7 14 PDB header:transferase
Chain: C: PDB Molecule:glucosyltransferase-si;
PDBTitle: crystal structure of glucansucrase from streptococcus mutans
111d2bhua1
not modelled 99.6 31 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
112d1eh9a1
not modelled 99.6 23 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:E-set domains of sugar-utilizing enzymes
113c3hz3A_
not modelled 99.2 14 PDB header:transferase
Chain: A: PDB Molecule:glucansucrase;
PDBTitle: lactobacillus reuteri n-terminally truncated glucansucrase2 gtf180(d1025n)-sucrose complex
114c3lppA_
not modelled 98.9 15 PDB header:hydrolase
Chain: A: PDB Molecule:sucrase-isomaltase;
PDBTitle: crystal complex of n-terminal sucrase-isomaltase with kotalanol
115c2qmjA_
not modelled 98.8 15 PDB header:hydrolase
Chain: A: PDB Molecule:maltase-glucoamylase, intestinal;
PDBTitle: crystral structure of the n-terminal subunit of human maltase-2 glucoamylase in complex with acarbose
116c3cc1B_
not modelled 98.8 11 PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-n-acetylgalactosaminidase;
PDBTitle: crystal structure of a putative alpha-n-acetylgalactosaminidase2 (bh1870) from bacillus halodurans c-125 at 2.00 a resolution
117d2f2ha4
not modelled 98.8 11 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:YicI catalytic domain-like
118d1eswa_
not modelled 98.7 22 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
119c3topA_
not modelled 98.5 14 PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:maltase-glucoamylase, intestinal;
PDBTitle: crystral structure of the c-terminal subunit of human maltase-2 glucoamylase in complex with acarbose
120c2yfnA_
not modelled 98.5 12 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase-sucrose kinase agask;
PDBTitle: galactosidase domain of alpha-galactosidase-sucrose kinase,2 agask

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0