Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionO06446
DateTue Jul 17 17:05:02 BST 2012
Unique Job ID963cd0d565b47ac7

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2ipcB_
Top template information
PDB header:transport protein
Chain: B: PDB Molecule:preprotein translocase seca subunit;
PDBTitle: crystal structure of the translocation atpase seca from thermus2 thermophilus reveals a parallel, head-to-head dimer
Confidence and coverage
Confidence:100.0% Coverage: 91%
771 residues ( 91% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MGFLSKILDGNNKEIKQLGKLADKVIALEEKTAILTDEEIRNKTKQFQTELADIDNVKKQ
Secondary structure 











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Disorder  ??


















































???????
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   .........70.........80.........90.........100.........110.........120
Sequence  NDYLDKILPEAYALVREGSKRVFNMTPYKVQIMGGIAIHKGDIAEMRTGEGKTLTATMPT
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?












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   .........130.........140.........150.........160.........170.........180
Sequence  YLNALAGRGVHVITVNEYLSSVQSEEMAELYNFLGLTVGLNLNSKTTEEKREAYAQDITY
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??
??













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   .........190.........200.........210.........220.........230.........240
Sequence  STNNELGFDYLRDNMVNYSEDRVMRPLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLY
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?????





































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   .........250.........260.........270.........280.........290.........300
Sequence  TQANVFAKMLKQDEDYKYDEKTKAVHLTEQGADKAERMFKVENLYDVQNVDVISHINTAL
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??
?

























?















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   .........310.........320.........330.........340.........350.........360
Sequence  RAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVQIQNESKTMAS
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???????

?
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   .........370.........380.........390.........400.........410.........420
Sequence  ITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNKPVQRNDKSDLIYISQKGK
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   .........430.........440.........450.........460.........470.........480
Sequence  FDAVVEDVVEKHKAGQPVLLGTVAVETSEYISNLLKKRGIRHDVLNAKNHEREAEIVAGA
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????









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   .........490.........500.........510.........520.........530.........540
Sequence  GQKGAVTIATNMAGRGTDIKLGEGVEELGGLAVIGTERHESRRIDDQLRGRSGRQGDKGD
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   .........550.........560.........570.........580.........590.........600
Sequence  SRFYLSLQDELMIRFGSERLQKMMSRLGLDDSTPIESKMVSRAVESAQKRVEGNNFDARK
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????

?
















???




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   .........610.........620.........630.........640.........650.........660
Sequence  RILEYDEVLRKQREIIYNERNSIIDEEDSSQVVDAMLRSTLQRSINYYINTADDEPEYQP
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   .........670.........680.........690.........700.........710.........720
Sequence  FIDYINDIFLQEGDITEDDIKGKDAEDIFEVVWAKIEAAYQSQKDILEEQMNEFERMILL
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???



































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   .........730.........740.........750.........760.........770.........780
Sequence  RSIDSHWTDHIDTMDQLRQGIHLRSYAQQNPLRDYQNEGHELFDIMMQNIEEDTCKFILK
Secondary structure 


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?




























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   .........790.........800.........810.........820.........830.........840
Sequence  SVVQVEDNIEREKTTEFGEAKHVSAEDGKEKVKPKPIVKGDQVGRNDDCPCGSGKKFKNC
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Disorder 
?
???????????????????????????????????????????









????
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   ...
Sequence  HGK
Secondary structure 


SS confidence 


Disorder  ???
Disorder confidence 


 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2ipc chain B

3D model

Region: 5 - 784
Aligned: 771
Modelled: 780
Confidence: 100.0%
Identity: 51%
PDB header:transport protein
Chain: B: PDB Molecule:preprotein translocase seca subunit;
PDBTitle: crystal structure of the translocation atpase seca from thermus2 thermophilus reveals a parallel, head-to-head dimer

Phyre2

PDB 1nl3 chain B

3D model

Region: 1 - 783
Aligned: 777
Modelled: 783
Confidence: 100.0%
Identity: 50%
PDB header:protein transport
Chain: B: PDB Molecule:preprotein translocase seca 1 subunit;
PDBTitle: crystal structure of the seca protein translocation atpase2 from mycobacterium tuberculosis in apo form

Phyre2

PDB 2vda chain A

3D model

Region: 7 - 788
Aligned: 775
Modelled: 775
Confidence: 100.0%
Identity: 50%
PDB header:protein transport
Chain: A: PDB Molecule:translocase subunit seca;
PDBTitle: solution structure of the seca-signal peptide complex

Phyre2

PDB 3jux chain A

3D model

Region: 8 - 781
Aligned: 763
Modelled: 763
Confidence: 100.0%
Identity: 48%
PDB header:protein transport
Chain: A: PDB Molecule:protein translocase subunit seca;
PDBTitle: structure of the translocation atpase seca from thermotoga2 maritima

Phyre2

PDB 3din chain B

3D model

Region: 7 - 781
Aligned: 764
Modelled: 764
Confidence: 100.0%
Identity: 48%
PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:protein translocase subunit seca;
PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase

Phyre2

PDB 1tf2 chain A

3D model

Region: 7 - 783
Aligned: 769
Modelled: 776
Confidence: 100.0%
Identity: 63%
PDB header:protein transport
Chain: A: PDB Molecule:preprotein translocase seca subunit;
PDBTitle: crystal structure of seca:adp in an open conformation from2 bacillus subtilis

Phyre2

PDB 3dl8 chain B

3D model

Region: 6 - 781
Aligned: 769
Modelled: 769
Confidence: 100.0%
Identity: 63%
PDB header:protein transport
Chain: B: PDB Molecule:protein translocase subunit seca;
PDBTitle: structure of the complex of aquifex aeolicus secyeg and2 bacillus subtilis seca

Phyre2

PDB 2fsg chain A

3D model

Region: 13 - 786
Aligned: 645
Modelled: 652
Confidence: 100.0%
Identity: 48%
PDB header:protein transport
Chain: A: PDB Molecule:preprotein translocase seca subunit;
PDBTitle: complex seca:atp from escherichia coli

Phyre2

PDB 1nkt chain A domain 3

3D model

Region: 1 - 401
Aligned: 273
Modelled: 277
Confidence: 100.0%
Identity: 59%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Tandem AAA-ATPase domain

Phyre2

PDB 3bxz chain A

3D model

Region: 9 - 551
Aligned: 408
Modelled: 415
Confidence: 100.0%
Identity: 62%
PDB header:transport protein
Chain: A: PDB Molecule:preprotein translocase subunit seca;
PDBTitle: crystal structure of the isolated dead motor domains from2 escherichia coli seca

Phyre2

PDB 1tf5 chain A domain 3

3D model

Region: 7 - 401
Aligned: 266
Modelled: 273
Confidence: 100.0%
Identity: 68%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Tandem AAA-ATPase domain

Phyre2

PDB 1nkt chain A domain 4

3D model

Region: 403 - 576
Aligned: 174
Modelled: 174
Confidence: 100.0%
Identity: 65%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Tandem AAA-ATPase domain

Phyre2

PDB 1tf5 chain A domain 2

3D model

Region: 577 - 783
Aligned: 207
Modelled: 207
Confidence: 100.0%
Identity: 50%
Fold: Helical scaffold and wing domains of SecA
Superfamily: Helical scaffold and wing domains of SecA
Family: Helical scaffold and wing domains of SecA

Phyre2

PDB 1nkt chain A domain 2

3D model

Region: 577 - 783
Aligned: 203
Modelled: 207
Confidence: 100.0%
Identity: 30%
Fold: Helical scaffold and wing domains of SecA
Superfamily: Helical scaffold and wing domains of SecA
Family: Helical scaffold and wing domains of SecA

Phyre2

PDB 1tf5 chain A domain 4

3D model

Region: 402 - 576
Aligned: 175
Modelled: 175
Confidence: 100.0%
Identity: 73%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Tandem AAA-ATPase domain

Phyre2

PDB 1nkt chain A domain 1

3D model

Region: 231 - 354
Aligned: 124
Modelled: 124
Confidence: 100.0%
Identity: 44%
Fold: Pre-protein crosslinking domain of SecA
Superfamily: Pre-protein crosslinking domain of SecA
Family: Pre-protein crosslinking domain of SecA

Phyre2

PDB 1tf5 chain A domain 1

3D model

Region: 233 - 354
Aligned: 122
Modelled: 122
Confidence: 100.0%
Identity: 65%
Fold: Pre-protein crosslinking domain of SecA
Superfamily: Pre-protein crosslinking domain of SecA
Family: Pre-protein crosslinking domain of SecA

Phyre2

PDB 2v1x chain B

3D model

Region: 75 - 549
Aligned: 331
Modelled: 348
Confidence: 100.0%
Identity: 21%
PDB header:hydrolase
Chain: B: PDB Molecule:atp-dependent dna helicase q1;
PDBTitle: crystal structure of human recq-like dna helicase

Phyre2

PDB 1oyw chain A

3D model

Region: 73 - 587
Aligned: 354
Modelled: 388
Confidence: 99.9%
Identity: 18%
PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent dna helicase;
PDBTitle: structure of the recq catalytic core

Phyre2

PDB 1gm5 chain A

3D model

Region: 26 - 550
Aligned: 351
Modelled: 382
Confidence: 99.9%
Identity: 21%
PDB header:helicase
Chain: A: PDB Molecule:recg;
PDBTitle: structure of recg bound to three-way dna junction

Phyre2

PDB 2i9w chain A

3D model

Region: 820 - 843
Aligned: 24
Modelled: 21
Confidence: 99.3%
Identity: 46%
PDB header:metal binding protein
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a sec-c motif containing protein (psyc_2064) from2 psychrobacter arcticus at 1.75 a resolution

Phyre2

PDB 1ozb chain J

3D model

Region: 823 - 843
Aligned: 21
Modelled: 21
Confidence: 99.1%
Identity: 71%
PDB header:protein transport
Chain: J: PDB Molecule:preprotein translocase seca subunit;
PDBTitle: crystal structure of secb complexed with seca c-terminus

Phyre2

PDB 1ozb chain I

3D model

Region: 823 - 843
Aligned: 21
Modelled: 21
Confidence: 99.1%
Identity: 71%
Fold: Sec-C motif
Superfamily: Sec-C motif
Family: Sec-C motif

Phyre2

PDB 1ozb chain I

3D model

Region: 823 - 843
Aligned: 21
Modelled: 21
Confidence: 99.1%
Identity: 71%
PDB header:protein transport
Chain: I: PDB Molecule:preprotein translocase seca subunit;
PDBTitle: crystal structure of secb complexed with seca c-terminus

Phyre2

PDB 1tm6 chain A

3D model

Region: 824 - 843
Aligned: 20
Modelled: 20
Confidence: 99.0%
Identity: 80%
PDB header:protein transport
Chain: A: PDB Molecule:preprotein translocase seca subunit;
PDBTitle: nmr structure of the free zinc binding c-terminal domain of2 seca

Phyre2

PDB 1tm6 chain A

3D model

Region: 824 - 843
Aligned: 20
Modelled: 20
Confidence: 99.0%
Identity: 80%
Fold: Sec-C motif
Superfamily: Sec-C motif
Family: Sec-C motif

Phyre2
1

c2ipcB_
2

c1nl3B_
3

c2vdaA_
4

c3juxA_
5

c3dinB_
6

c1tf2A_
7

c3dl8B_
8

c2fsgA_
9

d1nkta3
10

c3bxzA_
11

d1tf5a3
12

d1nkta4
13

d1tf5a2
14

d1nkta2
15

d1tf5a4
16

d1nkta1
17

d1tf5a1
18

c2v1xB_
19

c1oywA_
20

c1gm5A_
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c2i9wA_
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c1ozbJ_
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d1ozbi_
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c1ozbI_
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c1tm6A_
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d1tm6a_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2ipcB_



100.0 51 PDB header:transport protein
Chain: B: PDB Molecule:preprotein translocase seca subunit;
PDBTitle: crystal structure of the translocation atpase seca from thermus2 thermophilus reveals a parallel, head-to-head dimer
2c1nl3B_



100.0 50 PDB header:protein transport
Chain: B: PDB Molecule:preprotein translocase seca 1 subunit;
PDBTitle: crystal structure of the seca protein translocation atpase2 from mycobacterium tuberculosis in apo form
3c2vdaA_



100.0 50 PDB header:protein transport
Chain: A: PDB Molecule:translocase subunit seca;
PDBTitle: solution structure of the seca-signal peptide complex
4c3juxA_



100.0 48 PDB header:protein transport
Chain: A: PDB Molecule:protein translocase subunit seca;
PDBTitle: structure of the translocation atpase seca from thermotoga2 maritima
5c3dinB_



100.0 48 PDB header:membrane protein, protein transport
Chain: B: PDB Molecule:protein translocase subunit seca;
PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase
6c1tf2A_



100.0 63 PDB header:protein transport
Chain: A: PDB Molecule:preprotein translocase seca subunit;
PDBTitle: crystal structure of seca:adp in an open conformation from2 bacillus subtilis
7c3dl8B_



100.0 63 PDB header:protein transport
Chain: B: PDB Molecule:protein translocase subunit seca;
PDBTitle: structure of the complex of aquifex aeolicus secyeg and2 bacillus subtilis seca
8c2fsgA_



100.0 48 PDB header:protein transport
Chain: A: PDB Molecule:preprotein translocase seca subunit;
PDBTitle: complex seca:atp from escherichia coli
9d1nkta3



100.0 59 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
10c3bxzA_



100.0 62 PDB header:transport protein
Chain: A: PDB Molecule:preprotein translocase subunit seca;
PDBTitle: crystal structure of the isolated dead motor domains from2 escherichia coli seca
11d1tf5a3



100.0 68 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
12d1nkta4



100.0 65 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
13d1tf5a2



100.0 50 Fold:Helical scaffold and wing domains of SecA
Superfamily:Helical scaffold and wing domains of SecA
Family:Helical scaffold and wing domains of SecA
14d1nkta2



100.0 30 Fold:Helical scaffold and wing domains of SecA
Superfamily:Helical scaffold and wing domains of SecA
Family:Helical scaffold and wing domains of SecA
15d1tf5a4



100.0 73 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
16d1nkta1



100.0 44 Fold:Pre-protein crosslinking domain of SecA
Superfamily:Pre-protein crosslinking domain of SecA
Family:Pre-protein crosslinking domain of SecA
17d1tf5a1



100.0 65 Fold:Pre-protein crosslinking domain of SecA
Superfamily:Pre-protein crosslinking domain of SecA
Family:Pre-protein crosslinking domain of SecA
18c2v1xB_



100.0 21 PDB header:hydrolase
Chain: B: PDB Molecule:atp-dependent dna helicase q1;
PDBTitle: crystal structure of human recq-like dna helicase
19c1oywA_



99.9 18 PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent dna helicase;
PDBTitle: structure of the recq catalytic core
20c1gm5A_



99.9 21 PDB header:helicase
Chain: A: PDB Molecule:recg;
PDBTitle: structure of recg bound to three-way dna junction
21c1gl9B_



not modelled 99.9 26 PDB header:topoisomerase
Chain: B: PDB Molecule:reverse gyrase;
PDBTitle: archaeoglobus fulgidus reverse gyrase complexed with adpnp
22c2db3D_



not modelled 99.9 19 PDB header:hydrolase/rna
Chain: D: PDB Molecule:atp-dependent rna helicase vasa;
PDBTitle: structural basis for rna unwinding by the dead-box protein2 drosophila vasa
23c2eyqA_



not modelled 99.9 20 PDB header:hydrolase
Chain: A: PDB Molecule:transcription-repair coupling factor;
PDBTitle: crystal structure of escherichia coli transcription-repair2 coupling factor
24c2xgjA_



not modelled 99.9 19 PDB header:hydrolase/rna
Chain: A: PDB Molecule:atp-dependent rna helicase dob1;
PDBTitle: structure of mtr4, a dexh helicase involved in nuclear rna2 processing and surveillance
25c3tmiA_



not modelled 99.9 14 PDB header:hydrolase/rna
Chain: A: PDB Molecule:atp-dependent rna helicase ddx58;
PDBTitle: structural basis for rna recognition and activation of rig-i
26c1c4oA_



not modelled 99.9 15 PDB header:replication
Chain: A: PDB Molecule:dna nucleotide excision repair enzyme uvrb;
PDBTitle: crystal structure of the dna nucleotide excision repair enzyme uvrb2 from thermus thermophilus
27c3i5yA_



not modelled 99.9 15 PDB header:hydrolase/rna
Chain: A: PDB Molecule:atp-dependent rna helicase mss116;
PDBTitle: structure of mss116p bound to ssrna containing a single 5-bru and amp-2 pnp
28c3kx2A_



not modelled 99.9 21 PDB header:hydrolase
Chain: A: PDB Molecule:pre-mrna-splicing factor atp-dependent rna
PDBTitle: crystal structure of prp43p in complex with adp
29c3l9oA_



not modelled 99.9 20 PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent rna helicase dob1;
PDBTitle: crystal structure of mtr4, a co-factor of the nuclear exosome
30c2va8A_



not modelled 99.9 19 PDB header:hydrolase
Chain: A: PDB Molecule:ski2-type helicase;
PDBTitle: dna repair helicase hel308
31c1hv8B_



not modelled 99.9 19 PDB header:rna binding protein
Chain: B: PDB Molecule:putative atp-dependent rna helicase mj0669;
PDBTitle: crystal structure of a dead box protein from the2 hyperthermophile methanococcus jannaschii
32c3rc8A_



not modelled 99.9 18 PDB header:hydrolase/rna
Chain: A: PDB Molecule:atp-dependent rna helicase supv3l1, mitochondrial;
PDBTitle: human mitochondrial helicase suv3 in complex with short rna fragment
33c1xtkA_



not modelled 99.9 18 PDB header:gene regulation
Chain: A: PDB Molecule:probable atp-dependent rna helicase p47;
PDBTitle: structure of decd to dead mutation of human uap56
34c3oiyB_



not modelled 99.9 17 PDB header:isomerase
Chain: B: PDB Molecule:reverse gyrase helicase domain;
PDBTitle: helicase domain of reverse gyrase from thermotoga maritima
35c1s2mA_



not modelled 99.8 20 PDB header:rna binding protein
Chain: A: PDB Molecule:putative atp-dependent rna helicase dhh1;
PDBTitle: crystal structure of the dead box protein dhh1p
36c2jlrA_



not modelled 99.8 21 PDB header:hydrolase
Chain: A: PDB Molecule:serine protease subunit ns3;
PDBTitle: dengue virus 4 ns3 helicase in complex with amppnp
37c3ewsA_



not modelled 99.8 15 PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent rna helicase ddx19b;
PDBTitle: human dead-box rna-helicase ddx19 in complex with adp
38c2d7dA_



not modelled 99.8 16 PDB header:hydrolase/dna
Chain: A: PDB Molecule:uvrabc system protein b;
PDBTitle: structural insights into the cryptic dna dependent atp-ase2 activity of uvrb
39c4a4zA_



not modelled 99.8 20 PDB header:hydrolase
Chain: A: PDB Molecule:antiviral helicase ski2;
PDBTitle: crystal structure of the s. cerevisiae dexh helicase ski2 bound to2 amppnp
40c3fhtA_



not modelled 99.8 16 PDB header:hydrolase/rna
Chain: A: PDB Molecule:atp-dependent rna helicase ddx19b;
PDBTitle: crystal structure of human dbp5 in complex with amppnp and rna
41c2z83A_



not modelled 99.8 21 PDB header:viral protein
Chain: A: PDB Molecule:helicase/nucleoside triphosphatase;
PDBTitle: crystal structure of catalytic domain of japanese2 encephalitis virus ns3 helicase/nucleoside triphosphatase3 at a resolution 1.8
42c2v6jA_



not modelled 99.8 23 PDB header:hydrolase
Chain: A: PDB Molecule:rna helicase;
PDBTitle: kokobera virus helicase: mutant met47thr
43c3pexA_



not modelled 99.8 19 PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent rna helicase dbp5;
PDBTitle: s. cerevisiae dbp5 l327v bound to gle1 h337r and ip6
44c2hxyC_



not modelled 99.8 19 PDB header:hydrolase
Chain: C: PDB Molecule:probable atp-dependent rna helicase ddx48;
PDBTitle: crystal structure of human apo-eif4aiii
45c2ocaA_



not modelled 99.8 16 PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent dna helicase uvsw;
PDBTitle: the crystal structure of t4 uvsw
46c2wv9A_



not modelled 99.8 20 PDB header:hydrolase
Chain: A: PDB Molecule:flavivirin protease ns2b regulatory subunit, flavivirin
PDBTitle: crystal structure of the ns3 protease-helicase from murray2 valley encephalitis virus
47c2p6uA_



not modelled 99.8 20 PDB header:dna binding protein
Chain: A: PDB Molecule:afuhel308 helicase;
PDBTitle: apo structure of the hel308 superfamily 2 helicase
48c1wp9D_



not modelled 99.8 18 PDB header:hydrolase
Chain: D: PDB Molecule:atp-dependent rna helicase, putative;
PDBTitle: crystal structure of pyrococcus furiosus hef helicase domain
49c2zj2A_



not modelled 99.8 19 PDB header:hydrolase
Chain: A: PDB Molecule:putative ski2-type helicase;
PDBTitle: archaeal dna helicase hjm apo state in form 1
50c2vbcA_



not modelled 99.8 19 PDB header:hydrolase
Chain: A: PDB Molecule:dengue 4 ns3 full-length protein;
PDBTitle: crystal structure of the ns3 protease-helicase from dengue2 virus
51c2vsxA_



not modelled 99.8 17 PDB header:translation/hydrolase
Chain: A: PDB Molecule:atp-dependent rna helicase eif4a;
PDBTitle: crystal structure of a translation initiation complex
52c2z0mA_



not modelled 99.8 17 PDB header:rna binding protein
Chain: A: PDB Molecule:337aa long hypothetical atp-dependent rna
PDBTitle: crystal structure of hypothetical atp-dependent rna2 helicase from sulfolobus tokodaii
53c1ymfA_



not modelled 99.7 23 PDB header:hydrolase
Chain: A: PDB Molecule:genome polyprotein [contains: flavivirin
PDBTitle: crystal structure of yellow fever virus ns3 helicase2 complexed with adp
54c2i4iA_



not modelled 99.7 18 PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent rna helicase ddx3x;
PDBTitle: crystal structure of human dead-box rna helicase ddx3x
55c3tbkA_



not modelled 99.7 15 PDB header:hydrolase
Chain: A: PDB Molecule:rig-i helicase domain;
PDBTitle: mouse rig-i atpase domain
56c1a1vA_



not modelled 99.7 21 PDB header:hydrolase/dna
Chain: A: PDB Molecule:protein (ns3 protein);
PDBTitle: hepatitis c virus ns3 helicase domain complexed with single2 stranded sdna
57c2qeqA_



not modelled 99.7 21 PDB header:hydrolase
Chain: A: PDB Molecule:flavivirin protease ns3 catalytic subunit;
PDBTitle: crystal structure of kunjin virus ns3 helicase
58c2f55C_



not modelled 99.7 22 PDB header:hydrolase/dna
Chain: C: PDB Molecule:polyprotein;
PDBTitle: two hepatitis c virus ns3 helicase domains complexed with2 the same strand of dna
59c3fe2B_



not modelled 99.6 21 PDB header:hydrolase
Chain: B: PDB Molecule:probable atp-dependent rna helicase ddx5;
PDBTitle: human dead-box rna helicase ddx5 (p68), conserved domain i in complex2 with adp
60d1oywa3



not modelled 99.6 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
61d2bmfa2



not modelled 99.6 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RNA helicase
62c2fwrA_



not modelled 99.5 19 PDB header:dna binding protein
Chain: A: PDB Molecule:dna repair protein rad25;
PDBTitle: structure of archaeoglobus fulgidis xpb
63c3ly5A_



not modelled 99.5 23 PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent rna helicase ddx18;
PDBTitle: ddx18 dead-domain
64d2j0sa1



not modelled 99.5 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
65c2pl3A_



not modelled 99.5 22 PDB header:hydrolase
Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx10;
PDBTitle: human dead-box rna helicase ddx10, dead domain in complex with adp
66d2j0sa2



not modelled 99.5 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
67c2vl7A_



not modelled 99.5 16 PDB header:unknown function
Chain: A: PDB Molecule:xpd;
PDBTitle: structure of s. tokodaii xpd4
68c3dkpA_



not modelled 99.5 18 PDB header:hydrolase
Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx52;
PDBTitle: human dead-box rna-helicase ddx52, conserved domain i in complex with2 adp
69d1t5la2



not modelled 99.5 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
70c1z3iX_



not modelled 99.4 15 PDB header:recombination/dna binding
Chain: X: PDB Molecule:similar to rad54-like;
PDBTitle: structure of the swi2/snf2 chromatin remodeling domain of eukaryotic2 rad54
71c2yjtD_



not modelled 99.4 19 PDB header:hydrolase inhibitor/hydrolase
Chain: D: PDB Molecule:atp-dependent rna helicase srmb;
PDBTitle: crystal structure of e. coli dead-box protein srmb bound to2 regulator of ribonuclease activity a (rraa)
72d1gl9b1



not modelled 99.4 24 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Helicase-like "domain" of reverse gyrase
73d1s2ma1



not modelled 99.4 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
74d1s2ma2



not modelled 99.4 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
75c3mwyW_



not modelled 99.4 14 PDB header:hydrolase
Chain: W: PDB Molecule:chromo domain-containing protein 1;
PDBTitle: crystal structure of the chromodomain-atpase portion of the yeast chd12 chromatin remodeler
76d1hv8a2



not modelled 99.4 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
77c3iuyB_



not modelled 99.4 25 PDB header:hydrolase
Chain: B: PDB Molecule:probable atp-dependent rna helicase ddx53;
PDBTitle: crystal structure of ddx53 dead-box domain
78c3crw1_



not modelled 99.4 12 PDB header:hydrolase
Chain: 1: PDB Molecule:xpd/rad3 related dna helicase;
PDBTitle: "xpd_apo"
79c2hjvB_



not modelled 99.4 22 PDB header:hydrolase
Chain: B: PDB Molecule:atp-dependent rna helicase dbpa;
PDBTitle: structure of the second domain (residues 207-368) of the2 bacillus subtilis yxin protein
80d1c4oa2



not modelled 99.4 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
81c3berA_



not modelled 99.4 23 PDB header:hydrolase
Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx47;
PDBTitle: human dead-box rna-helicase ddx47, conserved domain i in complex with2 amp
82d2eyqa5



not modelled 99.4 22 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
83c3dmqA_



not modelled 99.4 18 PDB header:hydrolase
Chain: A: PDB Molecule:rna polymerase-associated protein rapa;
PDBTitle: crystal structure of rapa, a swi2/snf2 protein that2 recycles rna polymerase during transcription
84d1wrba1



not modelled 99.4 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
85d1q0ua_



not modelled 99.4 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
86c1cu1B_



not modelled 99.3 22 PDB header:hydrolase
Chain: B: PDB Molecule:protein (protease/helicase ns3);
PDBTitle: crystal structure of an enzyme complex from hepatitis c2 virus
87c2gxqA_



not modelled 99.3 22 PDB header:hydrolase
Chain: A: PDB Molecule:heat resistant rna dependent atpase;
PDBTitle: hera n-terminal domain in complex with amp, crystal form 1
88c2i9wA_



99.3 46 PDB header:metal binding protein
Chain: A: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a sec-c motif containing protein (psyc_2064) from2 psychrobacter arcticus at 1.75 a resolution
89d1qdea_



not modelled 99.3 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
90c2kbeA_



not modelled 99.3 18 PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent rna helicase dbp5;
PDBTitle: solution structure of amino-terminal domain of dbp5p
91d1hv8a1



not modelled 99.3 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
92d1veca_



not modelled 99.3 14 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
93d1gkub1



not modelled 99.3 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Helicase-like "domain" of reverse gyrase
94c3earA_



not modelled 99.3 17 PDB header:hydrolase
Chain: A: PDB Molecule:hera;
PDBTitle: novel dimerization motif in the dead box rna helicase hera: form 1,2 partial dimer
95d1gm5a4



not modelled 99.3 18 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
96d1gm5a3



not modelled 99.3 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
97c1z63A_



not modelled 99.3 16 PDB header:hydrolase/dna complex
Chain: A: PDB Molecule:helicase of the snf2/rad54 hamily;
PDBTitle: sulfolobus solfataricus swi2/snf2 atpase core in complex2 with dsdna
98c2w74B_



not modelled 99.2 18 PDB header:hydrolase
Chain: B: PDB Molecule:type i restriction enzyme ecor124ii r protein;
PDBTitle: mutant (k220r) of the hsdr subunit of the ecor124i2 restriction enzyme in complex with atp
99d2eyqa3



not modelled 99.2 17 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
100c2oxcA_



not modelled 99.2 17 PDB header:hydrolase
Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx20;
PDBTitle: human dead-box rna helicase ddx20, dead domain in complex2 with adp
101c3fhcB_



not modelled 99.2 13 PDB header:transport protein/hydrolase
Chain: B: PDB Molecule:atp-dependent rna helicase ddx19b;
PDBTitle: crystal structure of human dbp5 in complex with nup214
102d1t5ia_



not modelled 99.2 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
103d2g9na1



not modelled 99.2 23 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
104c2kbfA_



not modelled 99.2 20 PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent rna helicase dbp5;
PDBTitle: solution structure of carboxyl-terminal domain of dbp5p
105d2g2ja1



not modelled 99.2 15 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
106c3i32A_



not modelled 99.2 21 PDB header:rna binding protein,hydrolase
Chain: A: PDB Molecule:heat resistant rna dependent atpase;
PDBTitle: dimeric structure of a hera helicase fragment including the c-terminal2 reca domain, the dimerization domain, and the rna binding domain
107c3fmoB_



not modelled 99.2 14 PDB header:oncoprotein/hydrolase
Chain: B: PDB Molecule:atp-dependent rna helicase ddx19b;
PDBTitle: crystal structure of the nucleoporin nup214 in complex with the dead-2 box helicase ddx19
108c2p6nA_



not modelled 99.2 22 PDB header:hydrolase
Chain: A: PDB Molecule:atp-dependent rna helicase ddx41;
PDBTitle: human dead-box rna helicase ddx41, helicase domain
109d1a1va2



not modelled 99.1 21 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:RNA helicase
110c3h1tA_



not modelled 99.1 15 PDB header:hydrolase
Chain: A: PDB Molecule:type i site-specific restriction-modification
PDBTitle: the fragment structure of a putative hsdr subunit of a type2 i restriction enzyme from vibrio vulnificus yj016
111c1ozbJ_



99.1 71 PDB header:protein transport
Chain: J: PDB Molecule:preprotein translocase seca subunit;
PDBTitle: crystal structure of secb complexed with seca c-terminus
112d1ozbi_



99.1 71 Fold:Sec-C motif
Superfamily:Sec-C motif
Family:Sec-C motif
113c1ozbI_



99.1 71 PDB header:protein transport
Chain: I: PDB Molecule:preprotein translocase seca subunit;
PDBTitle: crystal structure of secb complexed with seca c-terminus
114c3fmpD_



not modelled 99.1 14 PDB header:oncoprotein/hydrolase
Chain: D: PDB Molecule:atp-dependent rna helicase ddx19b;
PDBTitle: crystal structure of the nucleoporin nup214 in complex with the dead-2 box helicase ddx19
115d1t6na_



not modelled 99.1 16 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
116d1oywa2



not modelled 99.0 19 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain
117c1tm6A_



99.0 80 PDB header:protein transport
Chain: A: PDB Molecule:preprotein translocase seca subunit;
PDBTitle: nmr structure of the free zinc binding c-terminal domain of2 seca
118d1tm6a_



99.0 80 Fold:Sec-C motif
Superfamily:Sec-C motif
Family:Sec-C motif
119c2jgnB_



not modelled 99.0 16 PDB header:hydrolase
Chain: B: PDB Molecule:atp-dependent rna helicase ddx3x;
PDBTitle: ddx3 helicase domain
120d2p6ra4



not modelled 99.0 20 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Tandem AAA-ATPase domain

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