Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	Q	Y	P	I	N	E	M	F	Q	T	L	Q	G	E	G	Y	F	T	G	V	P	A	I	F	I	R	L	Q	G	C	P	V	G	C	A	W	C	D	T	K	H	T	W	E	K	L	E	D	R	E	V	S	L	F	S	I	L	A	K
Secondary structure
SS confidence
Disorder		?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	K	E	S	D	K	W	G	A	A	S	S	E	D	L	L	A	V	I	G	R	Q	G	Y	T	A	R	H	V	V	I	T	G	G	E	P	C	I	H	D	L	L	P	L	T	D	L	L	E	K	N	G	F	S	C	Q	I	E	T	S
Secondary structure
SS confidence
Disorder		?		?	?	?	?	?		?													?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		G	T	H	E	V	R	C	T	P	N	T	W	V	T	V	S	P	K	L	N	M	R	G	G	Y	E	V	L	S	Q	A	L	E	R	A	N	E	I	K	H	P	V	G	R	V	R	D	I	E	A	L	D	E	L	L	A	T	L	T	D
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Sequence		D	K	P	R	V	I	A	L	Q	P	I	S	Q	K	D	D	A	T	R	L	C	I	E	T	C	I	A	R	N	W	R	L	S	M	Q	T	H	K	Y	L	N	I	A
Secondary structure
SS confidence
Disorder																																										?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3c8f chain A Region: 2 - 216 Aligned: 185 Modelled: 201 Confidence: 99.9% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate formate-lyase 1-activating enzyme; PDBTitle: 4fe-4s-pyruvate formate-lyase activating enzyme with2 partially disordered adomet Phyre2 PDB 2yx0 chain A Region: 28 - 213 Aligned: 175 Modelled: 186 Confidence: 99.7% Identity: 16% PDB header:metal binding protein Chain: A: PDB Molecule:radical sam enzyme; PDBTitle: crystal structure of p. horikoshii tyw1 Phyre2 PDB 1tv8 chain A Region: 13 - 214 Aligned: 173 Modelled: 176 Confidence: 99.6% Identity: 18% Fold: TIM beta/alpha-barrel Superfamily: Radical SAM enzymes Family: MoCo biosynthesis proteins Phyre2 PDB 3rfa chain A Region: 17 - 214 Aligned: 177 Modelled: 187 Confidence: 99.6% Identity: 17% PDB header:oxidoreductase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase n; PDBTitle: x-ray structure of rlmn from escherichia coli in complex with s-2 adenosylmethionine Phyre2 PDB 2z2u chain A Region: 31 - 213 Aligned: 165 Modelled: 167 Confidence: 99.5% Identity: 18% PDB header:metal binding protein Chain: A: PDB Molecule:upf0026 protein mj0257; PDBTitle: crystal structure of archaeal tyw1 Phyre2 PDB 3can chain A Region: 86 - 212 Aligned: 116 Modelled: 127 Confidence: 99.3% Identity: 12% PDB header:lyase activator Chain: A: PDB Molecule:pyruvate-formate lyase-activating enzyme; PDBTitle: crystal structure of a domain of pyruvate-formate lyase-activating2 enzyme from bacteroides vulgatus atcc 8482 Phyre2 PDB 2a5h chain C Region: 17 - 211 Aligned: 166 Modelled: 163 Confidence: 99.0% Identity: 13% PDB header:isomerase Chain: C: PDB Molecule:l-lysine 2,3-aminomutase; PDBTitle: 2.1 angstrom x-ray crystal structure of lysine-2,3-aminomutase from2 clostridium subterminale sb4, with michaelis analog (l-alpha-lysine3 external aldimine form of pyridoxal-5'-phosphate). Phyre2 PDB 3t7v chain A Region: 21 - 210 Aligned: 159 Modelled: 160 Confidence: 98.3% Identity: 14% PDB header:transferase Chain: A: PDB Molecule:methylornithine synthase pylb; PDBTitle: crystal structure of methylornithine synthase (pylb) Phyre2 PDB 1olt chain A Region: 23 - 214 Aligned: 168 Modelled: 191 Confidence: 98.2% Identity: 16% Fold: TIM beta/alpha-barrel Superfamily: Radical SAM enzymes Family: Oxygen-independent coproporphyrinogen III oxidase HemN Phyre2 PDB 1r30 chain A Region: 21 - 210 Aligned: 158 Modelled: 160 Confidence: 98.2% Identity: 14% Fold: TIM beta/alpha-barrel Superfamily: Radical SAM enzymes Family: Biotin synthase Phyre2 PDB 1r30 chain A Region: 21 - 210 Aligned: 158 Modelled: 160 Confidence: 98.2% Identity: 14% PDB header:transferase Chain: A: PDB Molecule:biotin synthase; PDBTitle: the crystal structure of biotin synthase, an s-2 adenosylmethionine-dependent radical enzyme Phyre2 PDB 3cix chain A Region: 23 - 210 Aligned: 156 Modelled: 157 Confidence: 98.2% Identity: 15% PDB header:adomet binding protein Chain: A: PDB Molecule:fefe-hydrogenase maturase; PDBTitle: x-ray structure of the [fefe]-hydrogenase maturase hyde from2 thermotoga maritima in complex with thiocyanate Phyre2 PDB 2qgq chain F Region: 35 - 210 Aligned: 147 Modelled: 159 Confidence: 89.8% Identity: 10% PDB header:structural genomics, unknown function Chain: F: PDB Molecule:protein tm_1862; PDBTitle: crystal structure of tm_1862 from thermotoga maritima.2 northeast structural genomics consortium target vr77 Phyre2 PDB 3k8k chain B Region: 163 - 214 Aligned: 52 Modelled: 52 Confidence: 79.7% Identity: 15% PDB header:membrane protein Chain: B: PDB Molecule:alpha-amylase, susg; PDBTitle: crystal structure of susg Phyre2 PDB 2wcs chain A Region: 163 - 214 Aligned: 52 Modelled: 52 Confidence: 77.8% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:alpha amylase, catalytic region; PDBTitle: crystal structure of debranching enzyme from nostoc2 punctiforme (npde) Phyre2 PDB 1m53 chain A domain 2 Region: 163 - 214 Aligned: 52 Modelled: 52 Confidence: 76.6% Identity: 25% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: Amylase, catalytic domain Phyre2 PDB 2qpu chain B Region: 163 - 214 Aligned: 52 Modelled: 52 Confidence: 76.3% Identity: 13% PDB header:hydrolase Chain: B: PDB Molecule:alpha-amylase type a isozyme; PDBTitle: sugar tongs mutant s378p in complex with acarbose Phyre2 PDB 1uok chain A domain 2 Region: 163 - 214 Aligned: 52 Modelled: 52 Confidence: 74.6% Identity: 25% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: Amylase, catalytic domain Phyre2 PDB 1gvi chain A domain 3 Region: 166 - 214 Aligned: 49 Modelled: 49 Confidence: 74.5% Identity: 22% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: Amylase, catalytic domain Phyre2 PDB 1lwh chain A domain 2 Region: 163 - 216 Aligned: 54 Modelled: 54 Confidence: 74.5% Identity: 22% Fold: TIM beta/alpha-barrel Superfamily: (Trans)glycosidases Family: Amylase, catalytic domain Phyre2 1 c3c8fA_ 2 c2yx0A_ 3 d1tv8a_ 4 c3rfaA_ 5 c2z2uA_ 6 c3canA_ 7 c2a5hC_ 8 c3t7vA_ 9 d1olta_ 10 d1r30a_ 11 c1r30A_ 12 c3cixA_ 13 c2qgqF_ 14 c3k8kB_ 15 c2wcsA_ 16 d1m53a2 17 c2qpuB_ 18 d1uoka2 19 d1gvia3 20 d1lwha2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3c8fA_ 99.9 18 PDB header:oxidoreductase Chain: A: PDB Molecule:pyruvate formate-lyase 1-activating enzyme; PDBTitle: 4fe-4s-pyruvate formate-lyase activating enzyme with2 partially disordered adomet 2 c2yx0A_ 99.7 16 PDB header:metal binding protein Chain: A: PDB Molecule:radical sam enzyme; PDBTitle: crystal structure of p. horikoshii tyw1 3 d1tv8a_ 99.6 18 Fold:TIM beta/alpha-barrel Superfamily:Radical SAM enzymes Family:MoCo biosynthesis proteins 4 c3rfaA_ 99.6 17 PDB header:oxidoreductase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase n; PDBTitle: x-ray structure of rlmn from escherichia coli in complex with s-2 adenosylmethionine 5 c2z2uA_ 99.5 18 PDB header:metal binding protein Chain: A: PDB Molecule:upf0026 protein mj0257; PDBTitle: crystal structure of archaeal tyw1 6 c3canA_ 99.3 12 PDB header:lyase activator Chain: A: PDB Molecule:pyruvate-formate lyase-activating enzyme; PDBTitle: crystal structure of a domain of pyruvate-formate lyase-activating2 enzyme from bacteroides vulgatus atcc 8482 7 c2a5hC_ 99.0 13 PDB header:isomerase Chain: C: PDB Molecule:l-lysine 2,3-aminomutase; PDBTitle: 2.1 angstrom x-ray crystal structure of lysine-2,3-aminomutase from2 clostridium subterminale sb4, with michaelis analog (l-alpha-lysine3 external aldimine form of pyridoxal-5'-phosphate). 8 c3t7vA_ 98.3 14 PDB header:transferase Chain: A: PDB Molecule:methylornithine synthase pylb; PDBTitle: crystal structure of methylornithine synthase (pylb) 9 d1olta_ 98.2 16 Fold:TIM beta/alpha-barrel Superfamily:Radical SAM enzymes Family:Oxygen-independent coproporphyrinogen III oxidase HemN 10 d1r30a_ 98.2 14 Fold:TIM beta/alpha-barrel Superfamily:Radical SAM enzymes Family:Biotin synthase 11 c1r30A_ 98.2 14 PDB header:transferase Chain: A: PDB Molecule:biotin synthase; PDBTitle: the crystal structure of biotin synthase, an s-2 adenosylmethionine-dependent radical enzyme 12 c3cixA_ 98.2 15 PDB header:adomet binding protein Chain: A: PDB Molecule:fefe-hydrogenase maturase; PDBTitle: x-ray structure of the [fefe]-hydrogenase maturase hyde from2 thermotoga maritima in complex with thiocyanate 13 c2qgqF_ 89.8 10 PDB header:structural genomics, unknown function Chain: F: PDB Molecule:protein tm_1862; PDBTitle: crystal structure of tm_1862 from thermotoga maritima.2 northeast structural genomics consortium target vr77 14 c3k8kB_ 79.7 15 PDB header:membrane protein Chain: B: PDB Molecule:alpha-amylase, susg; PDBTitle: crystal structure of susg 15 c2wcsA_ 77.8 21 PDB header:hydrolase Chain: A: PDB Molecule:alpha amylase, catalytic region; PDBTitle: crystal structure of debranching enzyme from nostoc2 punctiforme (npde) 16 d1m53a2 76.6 25 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 17 c2qpuB_ 76.3 13 PDB header:hydrolase Chain: B: PDB Molecule:alpha-amylase type a isozyme; PDBTitle: sugar tongs mutant s378p in complex with acarbose 18 d1uoka2 74.6 25 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 19 d1gvia3 74.5 22 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 20 d1lwha2 74.5 22 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 21 c1lwhA_ not modelled 73.3 22 PDB header:transferase Chain: A: PDB Molecule:4-alpha-glucanotransferase; PDBTitle: crystal structure of t. maritima 4-alpha-glucanotransferase 22 d1ea9c3 not modelled 72.8 16 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 23 d1ob0a2 not modelled 72.7 16 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 24 c1ehaA_ not modelled 72.0 18 PDB header:hydrolase Chain: A: PDB Molecule:glycosyltrehalose trehalohydrolase; PDBTitle: crystal structure of glycosyltrehalose trehalohydrolase2 from sulfolobus solfataricus 25 c3a47A_ not modelled 71.9 13 PDB header:hydrolase Chain: A: PDB Molecule:oligo-1,6-glucosidase; PDBTitle: crystal structure of isomaltase from saccharomyces cerevisiae 26 c2dh3A_ not modelled 71.2 15 PDB header:transport protein, signaling protein Chain: A: PDB Molecule:4f2 cell-surface antigen heavy chain; PDBTitle: crystal structure of human ed-4f2hc 27 d2aaaa2 not modelled 70.8 18 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 28 d1h3ga3 not modelled 69.0 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 29 c1qhoA_ not modelled 68.4 14 PDB header:hydrolase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: five-domain alpha-amylase from bacillus stearothermophilus,2 maltose/acarbose complex 30 c1gviA_ not modelled 67.5 22 PDB header:hydrolase Chain: A: PDB Molecule:maltogenic amylase; PDBTitle: thermus maltogenic amylase in complex with beta-cd 31 d1ua7a2 not modelled 67.0 16 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 32 c1jibA_ not modelled 66.9 18 PDB header:hydrolase Chain: A: PDB Molecule:neopullulanase; PDBTitle: complex of alpha-amylase ii (tva ii) from thermoactinomyces2 vulgaris r-47 with maltotetraose based on a crystal soaked3 with maltohexaose. 33 d2bhua3 not modelled 66.4 12 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 34 d2guya2 not modelled 66.2 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 35 d1wzla3 not modelled 66.1 18 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 36 c1bagA_ not modelled 66.1 16 PDB header:alpha-amylase Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase; PDBTitle: alpha-amylase from bacillus subtilis complexed with2 maltopentaose 37 c1m53A_ not modelled 65.4 25 PDB header:isomerase Chain: A: PDB Molecule:isomaltulose synthase; PDBTitle: crystal structure of isomaltulose synthase (pali) from2 klebsiella sp. lx3 38 d1eh9a3 not modelled 64.4 18 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 39 c2ya0A_ not modelled 64.1 27 PDB header:hydrolase Chain: A: PDB Molecule:putative alkaline amylopullulanase; PDBTitle: catalytic module of the multi-modular glycogen-degrading2 pneumococcal virulence factor spua 40 d1j0ha3 not modelled 63.8 27 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 41 d1ht6a2 not modelled 63.7 13 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 42 c3pzqA_ not modelled 63.6 13 PDB header:hydrolase Chain: A: PDB Molecule:mannan endo-1,4-beta-mannosidase. glycosyl hydrolase family PDBTitle: structure of the hyperthermostable endo-1,4-beta-d-mannanase from2 thermotoga petrophila rku-1 with maltose and glycerol 43 d1avaa2 not modelled 62.1 13 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 44 c1ea9D_ not modelled 61.9 16 PDB header:hydrolase Chain: D: PDB Molecule:cyclomaltodextrinase; PDBTitle: cyclomaltodextrinase 45 c2aaaA_ not modelled 61.8 18 PDB header:glycosidase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: calcium binding in alpha-amylases: an x-ray diffraction2 study at 2.1 angstroms resolution of two enzymes from3 aspergillus 46 c2by0A_ not modelled 61.3 12 PDB header:hydrolase Chain: A: PDB Molecule:maltooligosyltrehalose trehalohydrolase; PDBTitle: is radiation damage dependent on the dose-rate used during2 macromolecular crystallography data collection 47 d1qhoa4 not modelled 60.8 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 48 c3edeB_ not modelled 60.3 14 PDB header:hydrolase Chain: B: PDB Molecule:cyclomaltodextrinase; PDBTitle: structural base for cyclodextrin hydrolysis 49 c2ze0A_ not modelled 59.8 19 PDB header:hydrolase Chain: A: PDB Molecule:alpha-glucosidase; PDBTitle: alpha-glucosidase gsj 50 c2z1kA_ not modelled 58.7 25 PDB header:hydrolase Chain: A: PDB Molecule:(neo)pullulanase; PDBTitle: crystal structure of ttha1563 from thermus thermophilus hb8 51 d1g5aa2 not modelled 58.6 18 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 52 c3ucqA_ not modelled 57.5 16 PDB header:transferase Chain: A: PDB Molecule:amylosucrase; PDBTitle: crystal structure of amylosucrase from deinococcus geothermalis 53 c3m07A_ not modelled 57.4 18 PDB header:unknown function Chain: A: PDB Molecule:putative alpha amylase; PDBTitle: 1.4 angstrom resolution crystal structure of putative alpha2 amylase from salmonella typhimurium. 54 c1jdaA_ not modelled 57.3 19 PDB header:hydrolase Chain: A: PDB Molecule:1,4-alpha maltotetrahydrolase; PDBTitle: maltotetraose-forming exo-amylase 55 c3czkA_ not modelled 55.2 18 PDB header:hydrolase Chain: A: PDB Molecule:sucrose hydrolase; PDBTitle: crystal structure analysis of sucrose hydrolase(suh) e322q-2 sucrose complex 56 c3dhuC_ not modelled 55.1 12 PDB header:hydrolase Chain: C: PDB Molecule:alpha-amylase; PDBTitle: crystal structure of an alpha-amylase from lactobacillus2 plantarum 57 c2zidA_ not modelled 53.3 17 PDB header:hydrolase Chain: A: PDB Molecule:dextran glucosidase; PDBTitle: crystal structure of dextran glucosidase e236q complex with2 isomaltotriose 58 c1uokA_ not modelled 52.5 25 PDB header:glucosidase Chain: A: PDB Molecule:oligo-1,6-glucosidase; PDBTitle: crystal structure of b. cereus oligo-1,6-glucosidase 59 d1mxga2 not modelled 51.3 19 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 60 d2gjpa2 not modelled 51.1 12 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 61 d1e43a2 not modelled 50.6 18 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 62 c1cygA_ not modelled 50.4 20 PDB header:glycosyltransferase Chain: A: PDB Molecule:cyclodextrin glucanotransferase; PDBTitle: cyclodextrin glucanotransferase (e.c.2.4.1.19) (cgtase) 63 c1jgiA_ not modelled 50.1 18 PDB header:transferase Chain: A: PDB Molecule:amylosucrase; PDBTitle: crystal structure of the active site mutant glu328gln of2 amylosucrase from neisseria polysaccharea in complex with3 the natural substrate sucrose 64 c1jd7A_ not modelled 49.7 13 PDB header:hydrolase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: crystal structure analysis of the mutant k300r of2 pseudoalteromonas haloplanctis alpha-amylase 65 c3l55B_ not modelled 49.7 7 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:b-1,4-endoglucanase/cellulase; PDBTitle: crystal structure of a putative beta-1,4-endoglucanase /2 cellulase from prevotella bryantii 66 c3bmwA_ not modelled 49.6 16 PDB header:transferase Chain: A: PDB Molecule:cyclomaltodextrin glucanotransferase; PDBTitle: cyclodextrin glycosyl transferase from thermoanerobacterium2 thermosulfurigenes em1 mutant s77p complexed with a maltoheptaose3 inhibitor 67 c2jvmA_ not modelled 49.4 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: solution nmr structure of rhodobacter sphaeroides protein2 rhos4_26430. northeast structural genomics consortium3 target rhr95 68 d1bf2a3 not modelled 49.0 8 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 69 d1pama4 not modelled 48.9 20 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 70 c1bf2A_ not modelled 47.4 8 PDB header:hydrolase Chain: A: PDB Molecule:isoamylase; PDBTitle: structure of pseudomonas isoamylase 71 c1zjaB_ not modelled 47.4 22 PDB header:isomerase Chain: B: PDB Molecule:trehalulose synthase; PDBTitle: crystal structure of the trehalulose synthase mutb from2 pseudomonas mesoacidophila mx-45 (triclinic form) 72 d3bmva4 not modelled 47.2 22 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 73 c2pr7A_ not modelled 46.8 21 PDB header:hydrolase Chain: A: PDB Molecule:haloacid dehalogenase/epoxide hydrolase family; PDBTitle: crystal structure of uncharacterized protein (np_599989.1) from2 corynebacterium glutamicum atcc 13032 kitasato at 1.44 a resolution 74 d1gcya2 not modelled 46.5 20 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 75 c1bplA_ not modelled 46.5 13 PDB header:glycosyltransferase Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase; PDBTitle: glycosyltransferase 76 c1m7xC_ not modelled 46.4 19 PDB header:transferase Chain: C: PDB Molecule:1,4-alpha-glucan branching enzyme; PDBTitle: the x-ray crystallographic structure of branching enzyme 77 d1h4pa_ not modelled 45.3 9 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 78 c3icgD_ not modelled 43.7 7 PDB header:hydrolase Chain: D: PDB Molecule:endoglucanase d; PDBTitle: crystal structure of the catalytic and carbohydrate binding domain of2 endoglucanase d from clostridium cellulovorans 79 d1m7xa3 not modelled 41.8 19 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 80 d1cxla4 not modelled 40.5 18 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 81 d1ud2a2 not modelled 39.7 16 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 82 c2ya1A_ not modelled 39.5 27 PDB header:hydrolase Chain: A: PDB Molecule:putative alkaline amylopullulanase; PDBTitle: product complex of a multi-modular glycogen-degrading2 pneumococcal virulence factor spua 83 c1gcyA_ not modelled 39.4 23 PDB header:hydrolase Chain: A: PDB Molecule:glucan 1,4-alpha-maltotetrahydrolase; PDBTitle: high resolution crystal structure of maltotetraose-forming2 exo-amylase 84 d1cgta4 not modelled 39.2 14 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 85 c2zunB_ not modelled 38.7 15 PDB header:hydrolase Chain: B: PDB Molecule:458aa long hypothetical endo-1,4-beta-glucanase; PDBTitle: functional analysis of hyperthermophilic endocellulase from2 the archaeon pyrococcus horikoshii 86 c1hvxA_ not modelled 37.7 14 PDB header:hydrolase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: bacillus stearothermophilus alpha-amylase 87 c1ud8A_ not modelled 37.4 17 PDB header:hydrolase Chain: A: PDB Molecule:amylase; PDBTitle: crystal structure of amyk38 with lithium ion 88 c3amlA_ not modelled 37.2 21 PDB header:transferase Chain: A: PDB Molecule:os06g0726400 protein; PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l 89 d1edga_ not modelled 36.8 13 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 90 d1gjwa2 not modelled 35.5 29 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 91 c3blpX_ not modelled 35.2 17 PDB header:hydrolase Chain: X: PDB Molecule:alpha-amylase 1; PDBTitle: role of aromatic residues in human salivary alpha-amylase 92 d1cyga4 not modelled 34.3 20 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 93 c1tcmB_ not modelled 33.8 18 PDB header:glycosyltransferase Chain: B: PDB Molecule:cyclodextrin glycosyltransferase; PDBTitle: cyclodextrin glycosyltransferase w616a mutant from bacillus2 circulans strain 251 94 c3faxA_ not modelled 33.8 24 PDB header:hydrolase Chain: A: PDB Molecule:reticulocyte binding protein; PDBTitle: the crystal structure of gbs pullulanase sap in complex with2 maltotetraose 95 c2taaA_ not modelled 33.6 18 PDB header:hydrolase (o-glycosyl) Chain: A: PDB Molecule:taka-amylase a; PDBTitle: structure and possible catalytic residues of taka-amylase a 96 c3aysA_ not modelled 33.3 13 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase; PDBTitle: gh5 endoglucanase from a ruminal fungus in complex with cellotriose 97 c1wpcA_ not modelled 33.2 8 PDB header:hydrolase Chain: A: PDB Molecule:glucan 1,4-alpha-maltohexaosidase; PDBTitle: crystal structure of maltohexaose-producing amylase complexed with2 pseudo-maltononaose 98 d1hvxa2 not modelled 32.0 15 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 99 d1eeja1 not modelled 31.5 15 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbC/DsbG C-terminal domain-like 100 d1ji1a3 not modelled 31.5 16 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 101 c2wskA_ not modelled 29.5 18 PDB header:hydrolase Chain: A: PDB Molecule:glycogen debranching enzyme; PDBTitle: crystal structure of glycogen debranching enzyme glgx from2 escherichia coli k-12 102 d1ecea_ not modelled 29.3 11 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 103 c1e40A_ not modelled 29.0 19 PDB header:hydrolase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: tris/maltotriose complex of chimaeric amylase from b.2 amyloliquefaciens and b. licheniformis at 2.2a 104 c3civA_ not modelled 28.6 14 PDB header:hydrolase Chain: A: PDB Molecule:endo-beta-1,4-mannanase; PDBTitle: crystal structure of the endo-beta-1,4-mannanase from2 alicyclobacillus acidocaldarius 105 d2pb1a1 not modelled 28.0 11 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-glycanases 106 d2d3na2 not modelled 26.9 8 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 107 c2kl5A_ not modelled 26.7 57 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein yutd; PDBTitle: solution nmr structure of protein yutd from b.subtilis, northeast2 structural genomics consortium target sr232 108 d1wzaa2 not modelled 26.6 27 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 109 c2vncB_ not modelled 25.3 14 PDB header:hydrolase Chain: B: PDB Molecule:glycogen operon protein glgx; PDBTitle: crystal structure of glycogen debranching enzyme trex from2 sulfolobus solfataricus 110 c3zt5D_ not modelled 25.1 17 PDB header:hydrolase Chain: D: PDB Molecule:putative glucanohydrolase pep1a; PDBTitle: glge isoform 1 from streptomyces coelicolor with maltose2 bound 111 c2l7xA_ not modelled 24.8 30 PDB header:viral protein Chain: A: PDB Molecule:envelope glycoprotein; PDBTitle: crimean congo hemorrhagic fever gn zinc finger 112 d1adta3 not modelled 24.1 31 Fold:Zn-binding domains of ADDBP Superfamily:Zn-binding domains of ADDBP Family:Zn-binding domains of ADDBP 113 c3ib6B_ not modelled 24.1 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of an uncharacterized protein from listeria2 monocytogenes serotype 4b 114 c1jaeA_ not modelled 23.8 13 PDB header:glycosidase Chain: A: PDB Molecule:alpha-amylase; PDBTitle: structure of tenebrio molitor larval alpha-amylase 115 c3qr3B_ not modelled 23.5 12 PDB header:hydrolase Chain: B: PDB Molecule:endoglucanase eg-ii; PDBTitle: crystal structure of cel5a (eg2) from hypocrea jecorina (trichoderma2 reesei) 116 c3amkA_ not modelled 22.7 21 PDB header:transferase Chain: A: PDB Molecule:os06g0726400 protein; PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l 117 c3k1dA_ not modelled 22.7 20 PDB header:transferase Chain: A: PDB Molecule:1,4-alpha-glucan-branching enzyme; PDBTitle: crystal structure of glycogen branching enzyme synonym: 1,4-alpha-d-2 glucan:1,4-alpha-d-glucan 6-glucosyl-transferase from mycobacterium3 tuberculosis h37rv 118 c3p04A_ not modelled 22.3 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized bcr; PDBTitle: crystal structure of the bcr protein from corynebacterium glutamicum.2 northeast structural genomics consortium target cgr8 119 d1g94a2 not modelled 21.8 20 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain 120 c3kc2A_ not modelled 21.7 25 PDB header:hydrolase Chain: A: PDB Molecule:uncharacterized protein ykr070w; PDBTitle: crystal structure of mitochondrial had-like phosphatase from2 saccharomyces cerevisiae

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0