Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP26612
DateThu Jan 5 11:42:59 GMT 2012
Unique Job IDc690f5b0a6741235

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1hvxA_
Top template information
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: bacillus stearothermophilus alpha-amylase
Confidence and coverage
Confidence:100.0% Coverage: 97%
479 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MRNPTLLQCFHWYYPEGGKLWPELAERADGFNDIGINMVWLPPAYKGASGGYSVGYDSYD
Secondary structure 
SS confidence 
Disorder  ????
???????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  LFDLGEFDQKGSIPTKYGDKAQLLAAIDALKRNDIAVLLDVVVNHKMGADEKEAIRVQRV
Secondary structure 
SS confidence 
Disorder 
???????
?
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  NADDRTQIDEEIIECEGWTRYTFPARAGQYSQFIWDFKCFSGIDHIENPDEDGIFKIVND
Secondary structure 
SS confidence 
Disorder 
???????????
??????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  YTGEGWNDQVDDELGNFDYLMGENIDFRNHAVTEEIKYWARWVMEQTQCDGFRLDAVKHI
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  PAWFYKEWIEHVQEVAPKPLFIVAEYWSHEVDKLQTYIDQVEGKTMLFDAPLQMKFHEAS
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  RMGRDYDMTQIFTGTLVEADPFHAVTLVANHDTQPLQALEAPVEPWFKPLAYALILLREN
Secondary structure 
SS confidence 
Disorder 
?
?
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  GVPSVFYPDLYGAHYEDVGGDGQTYPIDMPIIEQLDELILARQRFAHGVQTLFFDHPNCI
Secondary structure 
SS confidence 
Disorder 
???
?
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  AFSRSGTDEFPGCVVVMSNGDDGEKTIHLGENYGNKTWRDFLGNRQERVVTDENGEATFF
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 
   .........490.....
Sequence  CNGGSVSVWVIEEVI
Secondary structure 
SS confidence 
Disorder 
?????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1hvx chain A

3D model

Region: 1 - 492
Aligned: 479
Modelled: 491
Confidence: 100.0%
Identity: 44%
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: bacillus stearothermophilus alpha-amylase

Phyre2

PDB 1wpc chain A

3D model

Region: 3 - 492
Aligned: 478
Modelled: 490
Confidence: 100.0%
Identity: 43%
PDB header:hydrolase
Chain: A: PDB Molecule:glucan 1,4-alpha-maltohexaosidase;
PDBTitle: crystal structure of maltohexaose-producing amylase complexed with2 pseudo-maltononaose

Phyre2

PDB 1ud8 chain A

3D model

Region: 3 - 492
Aligned: 475
Modelled: 480
Confidence: 100.0%
Identity: 45%
PDB header:hydrolase
Chain: A: PDB Molecule:amylase;
PDBTitle: crystal structure of amyk38 with lithium ion

Phyre2

PDB 1e40 chain A

3D model

Region: 3 - 492
Aligned: 480
Modelled: 490
Confidence: 100.0%
Identity: 42%
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: tris/maltotriose complex of chimaeric amylase from b.2 amyloliquefaciens and b. licheniformis at 2.2a

Phyre2

PDB 3bc9 chain A

3D model

Region: 3 - 493
Aligned: 461
Modelled: 468
Confidence: 100.0%
Identity: 38%
PDB header:hydrolase
Chain: A: PDB Molecule:alpha amylase, catalytic region;
PDBTitle: alpha-amylase b in complex with acarbose

Phyre2

PDB 1mwo chain A

3D model

Region: 2 - 492
Aligned: 411
Modelled: 429
Confidence: 100.0%
Identity: 28%
PDB header:hydrolase
Chain: A: PDB Molecule:alpha amylase;
PDBTitle: crystal structure analysis of the hyperthermostable2 pyrocoocus woesei alpha-amylase

Phyre2

PDB 1ud2 chain A domain 2

3D model

Region: 3 - 404
Aligned: 387
Modelled: 398
Confidence: 100.0%
Identity: 47%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Amylase, catalytic domain

Phyre2

PDB 2d3n chain A domain 2

3D model

Region: 3 - 407
Aligned: 393
Modelled: 405
Confidence: 100.0%
Identity: 45%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Amylase, catalytic domain

Phyre2

PDB 1hvx chain A domain 2

3D model

Region: 3 - 404
Aligned: 389
Modelled: 390
Confidence: 100.0%
Identity: 46%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Amylase, catalytic domain

Phyre2

PDB 2gjp chain A domain 2

3D model

Region: 3 - 407
Aligned: 393
Modelled: 395
Confidence: 100.0%
Identity: 43%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Amylase, catalytic domain

Phyre2

PDB 1ob0 chain A domain 2

3D model

Region: 3 - 404
Aligned: 390
Modelled: 402
Confidence: 100.0%
Identity: 44%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Amylase, catalytic domain

Phyre2

PDB 1e43 chain A domain 2

3D model

Region: 3 - 404
Aligned: 392
Modelled: 400
Confidence: 100.0%
Identity: 43%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Amylase, catalytic domain

Phyre2

PDB 3ede chain B

3D model

Region: 18 - 491
Aligned: 411
Modelled: 425
Confidence: 100.0%
Identity: 17%
PDB header:hydrolase
Chain: B: PDB Molecule:cyclomaltodextrinase;
PDBTitle: structural base for cyclodextrin hydrolysis

Phyre2

PDB 1tcm chain B

3D model

Region: 1 - 495
Aligned: 438
Modelled: 455
Confidence: 100.0%
Identity: 21%
PDB header:glycosyltransferase
Chain: B: PDB Molecule:cyclodextrin glycosyltransferase;
PDBTitle: cyclodextrin glycosyltransferase w616a mutant from bacillus2 circulans strain 251

Phyre2

PDB 1jae chain A

3D model

Region: 4 - 490
Aligned: 417
Modelled: 432
Confidence: 100.0%
Identity: 18%
PDB header:glycosidase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: structure of tenebrio molitor larval alpha-amylase

Phyre2

PDB 1qho chain A

3D model

Region: 1 - 495
Aligned: 446
Modelled: 453
Confidence: 100.0%
Identity: 17%
PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: five-domain alpha-amylase from bacillus stearothermophilus,2 maltose/acarbose complex

Phyre2

PDB 1gvi chain A

3D model

Region: 1 - 493
Aligned: 418
Modelled: 437
Confidence: 100.0%
Identity: 20%
PDB header:hydrolase
Chain: A: PDB Molecule:maltogenic amylase;
PDBTitle: thermus maltogenic amylase in complex with beta-cd

Phyre2

PDB 3blp chain X

3D model

Region: 4 - 491
Aligned: 434
Modelled: 454
Confidence: 100.0%
Identity: 15%
PDB header:hydrolase
Chain: X: PDB Molecule:alpha-amylase 1;
PDBTitle: role of aromatic residues in human salivary alpha-amylase

Phyre2

PDB 3bmw chain A

3D model

Region: 2 - 495
Aligned: 436
Modelled: 454
Confidence: 100.0%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:cyclomaltodextrin glucanotransferase;
PDBTitle: cyclodextrin glycosyl transferase from thermoanerobacterium2 thermosulfurigenes em1 mutant s77p complexed with a maltoheptaose3 inhibitor

Phyre2

PDB 1jib chain A

3D model

Region: 1 - 490
Aligned: 416
Modelled: 435
Confidence: 100.0%
Identity: 21%
PDB header:hydrolase
Chain: A: PDB Molecule:neopullulanase;
PDBTitle: complex of alpha-amylase ii (tva ii) from thermoactinomyces2 vulgaris r-47 with maltotetraose based on a crystal soaked3 with maltohexaose.

Phyre2
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c1hvxA_
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c1wpcA_
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c1ud8A_
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c1e40A_
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c3bc9A_
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c1mwoA_
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d1ud2a2
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d2d3na2
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d1hvxa2
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d2gjpa2
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d1ob0a2
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d1e43a2
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c3edeB_
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c1tcmB_
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c1jaeA_
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c1qhoA_
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c1gviA_
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c3blpX_
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c3bmwA_
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c1jibA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1hvxA_
100.0 44 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: bacillus stearothermophilus alpha-amylase
2c1wpcA_
100.0 43 PDB header:hydrolase
Chain: A: PDB Molecule:glucan 1,4-alpha-maltohexaosidase;
PDBTitle: crystal structure of maltohexaose-producing amylase complexed with2 pseudo-maltononaose
3c1ud8A_
100.0 45 PDB header:hydrolase
Chain: A: PDB Molecule:amylase;
PDBTitle: crystal structure of amyk38 with lithium ion
4c1e40A_
100.0 42 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: tris/maltotriose complex of chimaeric amylase from b.2 amyloliquefaciens and b. licheniformis at 2.2a
5c3bc9A_
100.0 38 PDB header:hydrolase
Chain: A: PDB Molecule:alpha amylase, catalytic region;
PDBTitle: alpha-amylase b in complex with acarbose
6c1mwoA_
100.0 28 PDB header:hydrolase
Chain: A: PDB Molecule:alpha amylase;
PDBTitle: crystal structure analysis of the hyperthermostable2 pyrocoocus woesei alpha-amylase
7d1ud2a2
100.0 47 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
8d2d3na2
100.0 45 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
9d1hvxa2
100.0 46 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
10d2gjpa2
100.0 43 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
11d1ob0a2
100.0 44 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
12d1e43a2
100.0 43 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
13c3edeB_
100.0 17 PDB header:hydrolase
Chain: B: PDB Molecule:cyclomaltodextrinase;
PDBTitle: structural base for cyclodextrin hydrolysis
14c1tcmB_
100.0 21 PDB header:glycosyltransferase
Chain: B: PDB Molecule:cyclodextrin glycosyltransferase;
PDBTitle: cyclodextrin glycosyltransferase w616a mutant from bacillus2 circulans strain 251
15c1jaeA_
100.0 18 PDB header:glycosidase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: structure of tenebrio molitor larval alpha-amylase
16c1qhoA_
100.0 17 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: five-domain alpha-amylase from bacillus stearothermophilus,2 maltose/acarbose complex
17c1gviA_
100.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:maltogenic amylase;
PDBTitle: thermus maltogenic amylase in complex with beta-cd
18c3blpX_
100.0 15 PDB header:hydrolase
Chain: X: PDB Molecule:alpha-amylase 1;
PDBTitle: role of aromatic residues in human salivary alpha-amylase
19c3bmwA_
100.0 19 PDB header:transferase
Chain: A: PDB Molecule:cyclomaltodextrin glucanotransferase;
PDBTitle: cyclodextrin glycosyl transferase from thermoanerobacterium2 thermosulfurigenes em1 mutant s77p complexed with a maltoheptaose3 inhibitor
20c1jibA_
100.0 21 PDB header:hydrolase
Chain: A: PDB Molecule:neopullulanase;
PDBTitle: complex of alpha-amylase ii (tva ii) from thermoactinomyces2 vulgaris r-47 with maltotetraose based on a crystal soaked3 with maltohexaose.
21c2qpuB_
not modelled 100.0 24 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-amylase type a isozyme;
PDBTitle: sugar tongs mutant s378p in complex with acarbose
22c1jd7A_
not modelled 100.0 15 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: crystal structure analysis of the mutant k300r of2 pseudoalteromonas haloplanctis alpha-amylase
23c1ea9D_
not modelled 100.0 21 PDB header:hydrolase
Chain: D: PDB Molecule:cyclomaltodextrinase;
PDBTitle: cyclomaltodextrinase
24c1cygA_
not modelled 100.0 20 PDB header:glycosyltransferase
Chain: A: PDB Molecule:cyclodextrin glucanotransferase;
PDBTitle: cyclodextrin glucanotransferase (e.c.2.4.1.19) (cgtase)
25c2aaaA_
not modelled 100.0 17 PDB header:glycosidase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: calcium binding in alpha-amylases: an x-ray diffraction2 study at 2.1 angstroms resolution of two enzymes from3 aspergillus
26c2taaA_
not modelled 100.0 19 PDB header:hydrolase (o-glycosyl)
Chain: A: PDB Molecule:taka-amylase a;
PDBTitle: structure and possible catalytic residues of taka-amylase a
27d1mxga2
not modelled 100.0 30 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
28c1jdaA_
not modelled 100.0 23 PDB header:hydrolase
Chain: A: PDB Molecule:1,4-alpha maltotetrahydrolase;
PDBTitle: maltotetraose-forming exo-amylase
29c3k8kB_
not modelled 100.0 19 PDB header:membrane protein
Chain: B: PDB Molecule:alpha-amylase, susg;
PDBTitle: crystal structure of susg
30c1gcyA_
not modelled 100.0 23 PDB header:hydrolase
Chain: A: PDB Molecule:glucan 1,4-alpha-maltotetrahydrolase;
PDBTitle: high resolution crystal structure of maltotetraose-forming2 exo-amylase
31c2wcsA_
not modelled 100.0 19 PDB header:hydrolase
Chain: A: PDB Molecule:alpha amylase, catalytic region;
PDBTitle: crystal structure of debranching enzyme from nostoc2 punctiforme (npde)
32c2d0gA_
not modelled 100.0 19 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase i;
PDBTitle: crystal structure of thermoactinomyces vulgaris r-47 alpha-2 amylase 1 (tvai) mutant d356n/e396q complexed with p5, a3 pullulan model oligosaccharide
33c1bagA_
not modelled 100.0 18 PDB header:alpha-amylase
Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase;
PDBTitle: alpha-amylase from bacillus subtilis complexed with2 maltopentaose
34c1jgiA_
not modelled 100.0 18 PDB header:transferase
Chain: A: PDB Molecule:amylosucrase;
PDBTitle: crystal structure of the active site mutant glu328gln of2 amylosucrase from neisseria polysaccharea in complex with3 the natural substrate sucrose
35c1m7xC_
not modelled 100.0 18 PDB header:transferase
Chain: C: PDB Molecule:1,4-alpha-glucan branching enzyme;
PDBTitle: the x-ray crystallographic structure of branching enzyme
36c3k1dA_
not modelled 100.0 19 PDB header:transferase
Chain: A: PDB Molecule:1,4-alpha-glucan-branching enzyme;
PDBTitle: crystal structure of glycogen branching enzyme synonym: 1,4-alpha-d-2 glucan:1,4-alpha-d-glucan 6-glucosyl-transferase from mycobacterium3 tuberculosis h37rv
37c3amlA_
not modelled 100.0 17 PDB header:transferase
Chain: A: PDB Molecule:os06g0726400 protein;
PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l
38c3amkA_
not modelled 100.0 17 PDB header:transferase
Chain: A: PDB Molecule:os06g0726400 protein;
PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l
39c1bf2A_
not modelled 100.0 16 PDB header:hydrolase
Chain: A: PDB Molecule:isoamylase;
PDBTitle: structure of pseudomonas isoamylase
40c2z1kA_
not modelled 100.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:(neo)pullulanase;
PDBTitle: crystal structure of ttha1563 from thermus thermophilus hb8
41c1wzaA_
not modelled 100.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase a;
PDBTitle: crystal structure of alpha-amylase from h.orenii
42c2ya0A_
not modelled 100.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:putative alkaline amylopullulanase;
PDBTitle: catalytic module of the multi-modular glycogen-degrading2 pneumococcal virulence factor spua
43c2ya1A_
not modelled 100.0 21 PDB header:hydrolase
Chain: A: PDB Molecule:putative alkaline amylopullulanase;
PDBTitle: product complex of a multi-modular glycogen-degrading2 pneumococcal virulence factor spua
44c2wanA_
not modelled 100.0 17 PDB header:hydrolase
Chain: A: PDB Molecule:pullulanase;
PDBTitle: pullulanase from bacillus acidopullulyticus
45c3czkA_
not modelled 100.0 18 PDB header:hydrolase
Chain: A: PDB Molecule:sucrose hydrolase;
PDBTitle: crystal structure analysis of sucrose hydrolase(suh) e322q-2 sucrose complex
46c2e8yA_
not modelled 100.0 18 PDB header:hydrolase
Chain: A: PDB Molecule:amyx protein;
PDBTitle: crystal structure of pullulanase type i from bacillus subtilis str.2 168
47c1uokA_
not modelled 100.0 18 PDB header:glucosidase
Chain: A: PDB Molecule:oligo-1,6-glucosidase;
PDBTitle: crystal structure of b. cereus oligo-1,6-glucosidase
48c2vncB_
not modelled 100.0 18 PDB header:hydrolase
Chain: B: PDB Molecule:glycogen operon protein glgx;
PDBTitle: crystal structure of glycogen debranching enzyme trex from2 sulfolobus solfataricus
49c1m53A_
not modelled 100.0 17 PDB header:isomerase
Chain: A: PDB Molecule:isomaltulose synthase;
PDBTitle: crystal structure of isomaltulose synthase (pali) from2 klebsiella sp. lx3
50d1jaea2
not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
51c3dhuC_
not modelled 100.0 16 PDB header:hydrolase
Chain: C: PDB Molecule:alpha-amylase;
PDBTitle: crystal structure of an alpha-amylase from lactobacillus2 plantarum
52c3a47A_
not modelled 100.0 17 PDB header:hydrolase
Chain: A: PDB Molecule:oligo-1,6-glucosidase;
PDBTitle: crystal structure of isomaltase from saccharomyces cerevisiae
53c3faxA_
not modelled 100.0 21 PDB header:hydrolase
Chain: A: PDB Molecule:reticulocyte binding protein;
PDBTitle: the crystal structure of gbs pullulanase sap in complex with2 maltotetraose
54c3zt5D_
not modelled 100.0 13 PDB header:hydrolase
Chain: D: PDB Molecule:putative glucanohydrolase pep1a;
PDBTitle: glge isoform 1 from streptomyces coelicolor with maltose2 bound
55d1gcya2
not modelled 100.0 23 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
56c2ze0A_
not modelled 100.0 19 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-glucosidase;
PDBTitle: alpha-glucosidase gsj
57c1zjaB_
not modelled 100.0 19 PDB header:isomerase
Chain: B: PDB Molecule:trehalulose synthase;
PDBTitle: crystal structure of the trehalulose synthase mutb from2 pseudomonas mesoacidophila mx-45 (triclinic form)
58c2gdvA_
not modelled 100.0 18 PDB header:transferase
Chain: A: PDB Molecule:sucrose phosphorylase;
PDBTitle: sucrose phosphorylase from bifidobacterium adolescentis2 reacted with sucrose
59c2wskA_
not modelled 100.0 17 PDB header:hydrolase
Chain: A: PDB Molecule:glycogen debranching enzyme;
PDBTitle: crystal structure of glycogen debranching enzyme glgx from2 escherichia coli k-12
60d3bmva4
not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
61d1qhoa4
not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
62d1g94a2
not modelled 100.0 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
63d1g5aa2
not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
64d1hx0a2
not modelled 100.0 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
65d1cgta4
not modelled 100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
66c3m07A_
not modelled 100.0 19 PDB header:unknown function
Chain: A: PDB Molecule:putative alpha amylase;
PDBTitle: 1.4 angstrom resolution crystal structure of putative alpha2 amylase from salmonella typhimurium.
67d1pama4
not modelled 100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
68d1ht6a2
not modelled 100.0 25 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
69d1avaa2
not modelled 100.0 27 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
70d2aaaa2
not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
71c2x4bA_
not modelled 100.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:limit dextrinase;
PDBTitle: barley limit dextrinase in complex with beta-cyclodextrin
72d1wzla3
not modelled 100.0 22 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
73c2fhfA_
not modelled 100.0 19 PDB header:hydrolase
Chain: A: PDB Molecule:pullulanase;
PDBTitle: crystal structure analysis of klebsiella pneumoniae2 pullulanase complexed with maltotetraose
74c1lwhA_
not modelled 100.0 18 PDB header:transferase
Chain: A: PDB Molecule:4-alpha-glucanotransferase;
PDBTitle: crystal structure of t. maritima 4-alpha-glucanotransferase
75d1cxla4
not modelled 100.0 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
76d2guya2
not modelled 100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
77d2fhfa5
not modelled 100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
78d1gvia3
not modelled 100.0 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
79d3dhpa2
not modelled 100.0 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
80c1ehaA_
not modelled 100.0 19 PDB header:hydrolase
Chain: A: PDB Molecule:glycosyltrehalose trehalohydrolase;
PDBTitle: crystal structure of glycosyltrehalose trehalohydrolase2 from sulfolobus solfataricus
81d1h3ga3
not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
82c2zidA_
not modelled 100.0 21 PDB header:hydrolase
Chain: A: PDB Molecule:dextran glucosidase;
PDBTitle: crystal structure of dextran glucosidase e236q complex with2 isomaltotriose
83d1cyga4
not modelled 100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
84d1ua7a2
not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
85d1uoka2
not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
86d1j0ha3
not modelled 100.0 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
87d1m53a2
not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
88c1gjuA_
not modelled 100.0 17 PDB header:transferase
Chain: A: PDB Molecule:maltodextrin glycosyltransferase;
PDBTitle: maltosyltransferase from thermotoga maritima
89d1lwha2
not modelled 100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
90c2by0A_
not modelled 100.0 19 PDB header:hydrolase
Chain: A: PDB Molecule:maltooligosyltrehalose trehalohydrolase;
PDBTitle: is radiation damage dependent on the dose-rate used during2 macromolecular crystallography data collection
91d1wzaa2
not modelled 100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
92d1ea9c3
not modelled 100.0 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
93c2dh3A_
not modelled 100.0 18 PDB header:transport protein, signaling protein
Chain: A: PDB Molecule:4f2 cell-surface antigen heavy chain;
PDBTitle: crystal structure of human ed-4f2hc
94d1m7xa3
not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
95d1ji1a3
not modelled 100.0 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
96d1bf2a3
not modelled 100.0 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
97d1r7aa2
not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
98c1bplB_
not modelled 100.0 42 PDB header:glycosyltransferase
Chain: B: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase;
PDBTitle: glycosyltransferase
99d1eh9a3
not modelled 100.0 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
100d1gjwa2
not modelled 100.0 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
101d2bhua3
not modelled 100.0 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
102c1iv8A_
not modelled 100.0 21 PDB header:isomerase
Chain: A: PDB Molecule:maltooligosyl trehalose synthase;
PDBTitle: crystal structure of maltooligosyl trehalose synthase
103c3hjeA_
not modelled 100.0 18 PDB header:transferase
Chain: A: PDB Molecule:704aa long hypothetical glycosyltransferase;
PDBTitle: crystal structure of sulfolobus tokodaii hypothetical2 maltooligosyl trehalose synthase
104c3aicC_
not modelled 100.0 25 PDB header:transferase
Chain: C: PDB Molecule:glucosyltransferase-si;
PDBTitle: crystal structure of glucansucrase from streptococcus mutans
105c1bplA_
not modelled 100.0 43 PDB header:glycosyltransferase
Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase;
PDBTitle: glycosyltransferase
106c3hz3A_
not modelled 100.0 25 PDB header:transferase
Chain: A: PDB Molecule:glucansucrase;
PDBTitle: lactobacillus reuteri n-terminally truncated glucansucrase2 gtf180(d1025n)-sucrose complex
107d1iv8a2
not modelled 100.0 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
108d1hvxa1
not modelled 99.6 36 Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
109d1ud2a1
not modelled 99.6 39 Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
110d1e43a1
not modelled 99.6 35 Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
111d2d3na1
not modelled 99.5 39 Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
112d2gjpa1
not modelled 99.5 41 Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
113c3cc1B_
not modelled 98.8 10 PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-n-acetylgalactosaminidase;
PDBTitle: crystal structure of a putative alpha-n-acetylgalactosaminidase2 (bh1870) from bacillus halodurans c-125 at 2.00 a resolution
114c1uasA_
not modelled 98.7 13 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of rice alpha-galactosidase
115d1ji1a2
not modelled 98.5 18 Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
116c2xn1B_
not modelled 98.5 14 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-galactosidase;
PDBTitle: structure of alpha-galactosidase from lactobacillus acidophilus ncfm2 with tris
117d1wzla2
not modelled 98.5 25 Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
118d1cyga3
not modelled 98.5 20 Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
119d1qhoa3
not modelled 98.5 20 Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain
120d1cgta3
not modelled 98.5 16 Fold:Glycosyl hydrolase domain
Superfamily:Glycosyl hydrolase domain
Family:alpha-Amylases, C-terminal beta-sheet domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0