11/01/2012 02:50:26 : INFO  : Run start: Wed Jan 11 02:50:26 GMT 2012
11/01/2012 02:50:28 : INFO  : Initialised job
11/01/2012 02:50:29 : INFO  : Renaming log file 'phyre2_20120111_025024.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/c690f5b0a6741235/phyre_20120111_025024.log'
11/01/2012 02:50:29 : INFO  : Initialised job:
Sequence
>batch____
MRNPTLLQCFHWYYPEGGKLWPELAERADGFNDIGINMVWLPPAYKGASGGYSVGYDSYD
LFDLGEFDQKGSIPTKYGDKAQLLAAIDALKRNDIAVLLDVVVNHKMGADEKEAIRVQRV
NADDRTQIDEEIIECEGWTRYTFPARAGQYSQFIWDFKCFSGIDHIENPDEDGIFKIVND
YTGEGWNDQVDDELGNFDYLMGENIDFRNHAVTEEIKYWARWVMEQTQCDGFRLDAVKHI
PAWFYKEWIEHVQEVAPKPLFIVAEYWSHEVDKLQTYIDQVEGKTMLFDAPLQMKFHEAS
RMGRDYDMTQIFTGTLVEADPFHAVTLVANHDTQPLQALEAPVEPWFKPLAYALILLREN
GVPSVFYPDLYGAHYEDVGGDGQTYPIDMPIIEQLDELILARQRFAHGVQTLFFDHPNCI
AFSRSGTDEFPGCVVVMSNGDDGEKTIHLGENYGNKTWRDFLGNRQERVVTDENGEATFF
CNGGSVSVWVIEEVI

11/01/2012 02:50:30 : INFO  : Checked sequence
11/01/2012 02:50:32 : INFO  : Finding homologues with PSI-BLAST
11/01/2012 02:50:33 : INFO  : PSI-BLAST 3 iterations
11/01/2012 02:52:48 : INFO  : PSI-BLAST 5 iterations
11/01/2012 02:55:44 : INFO  : Finished PSI-BLAST
11/01/2012 02:55:45 : INFO  : Running Buildali to generate a3m file
11/01/2012 03:14:12 : INFO  : Converting to HMM
11/01/2012 03:14:21 : INFO  : Calibrating HMM
11/01/2012 03:14:41 : INFO  : Searching HMM database
11/01/2012 03:26:42 : INFO  : Finished buildali
11/01/2012 03:26:43 : INFO  : Predicting secondary structure
11/01/2012 03:26:46 : INFO  : Predicted secondary structure (PSI-Pred)
11/01/2012 03:26:47 : INFO  : Predicting Disordered regions
11/01/2012 03:26:49 : INFO  : Predicted Disorder (Disopred)
11/01/2012 03:26:49 : INFO  : Running memsat_svm check
11/01/2012 03:29:43 : INFO  : Running memsat_svm full
11/01/2012 03:35:26 : INFO  : Predicted Transmembrane (memsat_svm) ID 'c690f5b0a6741235'
11/01/2012 03:35:27 : INFO  : Initialising fold library search
11/01/2012 03:35:29 : INFO  : Initialised search input
11/01/2012 03:35:30 : INFO  : Building Ensemble models
11/01/2012 03:35:33 : INFO  : Building hh.c1hvxA_.model.1.pdb
11/01/2012 03:35:42 : INFO  : Building hh.c1wpcA_.model.2.pdb
11/01/2012 03:35:53 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c690f5b0a6741235/hh.c1wpcA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c690f5b0a6741235/c1wpcA_.2.pdb
11/01/2012 03:35:55 : INFO  : Building hh.c1ud8A_.model.3.pdb
11/01/2012 03:36:01 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c690f5b0a6741235/hh.c1ud8A_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c690f5b0a6741235/c1ud8A_.3.pdb
11/01/2012 03:36:04 : INFO  : Building hh.c1e40A_.model.4.pdb
11/01/2012 03:36:11 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c690f5b0a6741235/hh.c1e40A_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c690f5b0a6741235/c1e40A_.4.pdb
11/01/2012 03:36:15 : INFO  : Building hh.c3bc9A_.model.5.pdb
11/01/2012 03:36:21 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/c690f5b0a6741235/hh.c3bc9A_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/c690f5b0a6741235/c3bc9A_.5.pdb
11/01/2012 03:36:26 : INFO  : Building c1hvxA_.1.pdb
11/01/2012 03:36:34 : INFO  : Building c1wpcA_.2.pdb
11/01/2012 03:36:42 : INFO  : Building c1ud8A_.3.pdb
11/01/2012 03:36:49 : INFO  : Building c1e40A_.4.pdb
11/01/2012 03:36:57 : INFO  : Building c3bc9A_.5.pdb
11/01/2012 03:37:07 : INFO  : Building c1mwoA_.6.pdb
11/01/2012 03:37:14 : INFO  : Building d1ud2a2.7.pdb
11/01/2012 03:37:23 : INFO  : Building d2d3na2.8.pdb
11/01/2012 03:37:32 : INFO  : Building d1hvxa2.9.pdb
11/01/2012 03:37:40 : INFO  : Building d2gjpa2.10.pdb
11/01/2012 03:37:50 : INFO  : Building d1ob0a2.11.pdb
11/01/2012 03:37:59 : INFO  : Building d1e43a2.12.pdb
11/01/2012 03:38:06 : INFO  : Building c3edeB_.13.pdb
11/01/2012 03:38:15 : INFO  : Building c1tcmB_.14.pdb
11/01/2012 03:38:24 : INFO  : Building c1jaeA_.15.pdb
11/01/2012 03:38:33 : INFO  : Building c1qhoA_.16.pdb
11/01/2012 03:38:44 : INFO  : Building c1gviA_.17.pdb
11/01/2012 03:38:54 : INFO  : Building c3blpX_.18.pdb
11/01/2012 03:39:01 : INFO  : Building c3bmwA_.19.pdb
11/01/2012 03:39:08 : INFO  : Building c1jibA_.20.pdb
11/01/2012 03:40:03 : INFO  : Finished HH model building
11/01/2012 03:40:04 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
11/01/2012 03:40:50 : INFO  : html domain output complete ID 'c690f5b0a6741235'
11/01/2012 06:50:29 : INFO  : Run end  : Wed Jan 11 06:50:29 GMT 2012
