Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP75906
DateThu Jan 5 12:15:53 GMT 2012
Unique Job ID6fed21bd00457251

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d2j13a1
Top template information
Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:NodB-like polysaccharide deacetylase
Confidence and coverage
Confidence: 99.9% Coverage: 27%
184 residues ( 27% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
491 residues ( 73%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MLRNGNKYLLMLVSIIMLTACISQSRTSFIPPQDRESLLAEQPWPHNGFVAISWHNVEDE
Secondary structure 
SS confidence 
Disorder  ??????
???????????????????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  AADQRFMSVRTSALREQFAWLRENGYQPVSIAQIREAHRGGKPLPEKAVVLTFDDGYQSF
Secondary structure 
SS confidence 
Disorder 
?
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  YTRVFPILQAFQWPAVWAPVGSWVDTPADKQVKFGDELVDREYFATWQQVREVARSRLVE
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  LASHTWNSHYGIQANATGSLLPVYVNRAYFTDHARYETAAEYRERIRLDAVKMTEYLRTK
Secondary structure 
SS confidence 
Disorder 
?????????
?
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  VEVNPHVFVWPYGEANGIAIEELKKLGYDMFFTLESGLANASQLDSIPRVLIANNPSLKE
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  FAQQIITVQEKSPQRIMHIDLDYVYDENLQQMDRNIDVLIQRVKDMQISTVYLQAFADPD
Secondary structure 
SS confidence 
Disorder 
?
?????
??????
??
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  GDGLVKEVWFPNRLLPMKADIFSRVAWQLRTRSGVNIYAWMPVLSWDLDPTLTRVKYLPT
Secondary structure 
SS confidence 
Disorder 
????
????????????????
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  GEKKAQIHPEQYHRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDDALLSDYEDASAPA
Secondary structure 
SS confidence 
Disorder  ?????
?????
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  ITAYQQAGFSGSLSEIRQNPEQFKQWARFKSRALTDFTLELSARVKAIRGPHIKTARNIF
Secondary structure 
SS confidence 
Disorder 
??
?
???
?
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  ALPVIQPESEAWFAQNYADFLKSYDWTAIMAMPYLEGVAEKSADQWLIQLTNQIKNIPQA
Secondary structure 
SS confidence 
Disorder 
????
?
????
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  KDKSILELQAQNWQKNGQHQAISSQQLAHWMSLLQLNGVKNYGYYPDNFLHNQPEIDLIR
Secondary structure 
SS confidence 
Disorder 
?
?????????????
?
Disorder confidence 
 
   .........670..
Sequence  PEFSTAWYPKND
Secondary structure 
SS confidence 
Disorder 
???????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2j13 chain A domain 1

3D model

Region: 84 - 351
Aligned: 184
Modelled: 192
Confidence: 99.9%
Identity: 18%
Fold: 7-stranded beta/alpha barrel
Superfamily: Glycoside hydrolase/deacetylase
Family: NodB-like polysaccharide deacetylase

Phyre2

PDB 2cc0 chain A domain 1

3D model

Region: 106 - 353
Aligned: 179
Modelled: 202
Confidence: 99.9%
Identity: 19%
Fold: 7-stranded beta/alpha barrel
Superfamily: Glycoside hydrolase/deacetylase
Family: NodB-like polysaccharide deacetylase

Phyre2

PDB 2iw0 chain A domain 1

3D model

Region: 102 - 351
Aligned: 195
Modelled: 209
Confidence: 99.9%
Identity: 19%
Fold: 7-stranded beta/alpha barrel
Superfamily: Glycoside hydrolase/deacetylase
Family: NodB-like polysaccharide deacetylase

Phyre2

PDB 1w17 chain A

3D model

Region: 105 - 351
Aligned: 182
Modelled: 191
Confidence: 99.9%
Identity: 21%
PDB header:hydrolase
Chain: A: PDB Molecule:probable polysaccharide deacetylase pdaa;
PDBTitle: structure of bacillus subtilis pdaa, a family 42 carbohydrate esterase.

Phyre2

PDB 2iw0 chain A

3D model

Region: 105 - 351
Aligned: 192
Modelled: 206
Confidence: 99.9%
Identity: 19%
PDB header:hydrolase
Chain: A: PDB Molecule:chitin deacetylase;
PDBTitle: structure of the chitin deacetylase from the fungal2 pathogen colletotrichum lindemuthianum

Phyre2

PDB 1ny1 chain A

3D model

Region: 106 - 351
Aligned: 181
Modelled: 190
Confidence: 99.9%
Identity: 22%
Fold: 7-stranded beta/alpha barrel
Superfamily: Glycoside hydrolase/deacetylase
Family: NodB-like polysaccharide deacetylase

Phyre2

PDB 2w3z chain A

3D model

Region: 106 - 354
Aligned: 201
Modelled: 209
Confidence: 99.9%
Identity: 20%
PDB header:hydrolase
Chain: A: PDB Molecule:putative deacetylase;
PDBTitle: structure of a streptococcus mutans ce4 esterase

Phyre2

PDB 2c1i chain A domain 1

3D model

Region: 107 - 351
Aligned: 174
Modelled: 183
Confidence: 99.9%
Identity: 17%
Fold: 7-stranded beta/alpha barrel
Superfamily: Glycoside hydrolase/deacetylase
Family: NodB-like polysaccharide deacetylase

Phyre2

PDB 2c1i chain A

3D model

Region: 89 - 351
Aligned: 192
Modelled: 210
Confidence: 99.9%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:peptidoglycan glcnac deacetylase;
PDBTitle: structure of streptococcus pnemoniae peptidoglycan2 deacetylase (sppgda) d 275 n mutant.

Phyre2

PDB 2vyo chain A

3D model

Region: 106 - 351
Aligned: 181
Modelled: 190
Confidence: 99.9%
Identity: 16%
PDB header:hydrolase
Chain: A: PDB Molecule:chitooligosaccharide deacetylase;
PDBTitle: chitin deacetylase family member from encephalitozoon2 cuniculi

Phyre2

PDB 2c71 chain A domain 1

3D model

Region: 107 - 351
Aligned: 178
Modelled: 184
Confidence: 99.9%
Identity: 23%
Fold: 7-stranded beta/alpha barrel
Superfamily: Glycoside hydrolase/deacetylase
Family: NodB-like polysaccharide deacetylase

Phyre2

PDB 3rxz chain A

3D model

Region: 100 - 353
Aligned: 194
Modelled: 208
Confidence: 99.7%
Identity: 22%
PDB header:hydrolase
Chain: A: PDB Molecule:polysaccharide deacetylase;
PDBTitle: crystal structure of putative polysaccharide deacetylase from2 mycobacterium smegmatis

Phyre2

PDB 1z7a chain A domain 1

3D model

Region: 103 - 397
Aligned: 215
Modelled: 217
Confidence: 99.7%
Identity: 11%
Fold: 7-stranded beta/alpha barrel
Superfamily: Glycoside hydrolase/deacetylase
Family: PA1517-like

Phyre2

PDB 3qbu chain D

3D model

Region: 108 - 352
Aligned: 196
Modelled: 199
Confidence: 99.7%
Identity: 18%
PDB header:hydrolase
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of putative peptidoglyacn deactelyase (hp0310) from2 helicobacter pylori

Phyre2

PDB 3s6o chain D

3D model

Region: 100 - 347
Aligned: 199
Modelled: 202
Confidence: 99.7%
Identity: 14%
PDB header:hydrolase
Chain: D: PDB Molecule:polysaccharide deacetylase family protein;
PDBTitle: crystal structure of a polysaccharide deacetylase family protein from2 burkholderia pseudomallei

Phyre2

PDB 1kwg chain A

3D model

Region: 333 - 646
Aligned: 288
Modelled: 310
Confidence: 99.6%
Identity: 14%
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of thermus thermophilus a4 beta-galactosidase

Phyre2

PDB 2nly chain A domain 1

3D model

Region: 107 - 354
Aligned: 156
Modelled: 161
Confidence: 99.4%
Identity: 17%
Fold: 7-stranded beta/alpha barrel
Superfamily: Glycoside hydrolase/deacetylase
Family: Divergent polysaccharide deacetylase

Phyre2

PDB 1kwg chain A domain 2

3D model

Region: 333 - 645
Aligned: 289
Modelled: 313
Confidence: 98.8%
Identity: 11%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Amylase, catalytic domain

Phyre2

PDB 1k1x chain A domain 3

3D model

Region: 112 - 345
Aligned: 194
Modelled: 195
Confidence: 98.6%
Identity: 10%
Fold: 7-stranded beta/alpha barrel
Superfamily: Glycoside hydrolase/deacetylase
Family: 4-alpha-glucanotransferase, N-terminal domain

Phyre2

PDB 1m7x chain A domain 3

3D model

Region: 336 - 535
Aligned: 159
Modelled: 167
Confidence: 98.5%
Identity: 11%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Amylase, catalytic domain

Phyre2
1
d2j13a1
2
d2cc0a1
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d2iw0a1
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c1w17A_
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c2iw0A_
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d1ny1a_
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c2w3zA_
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d2c1ia1
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c2c1iA_
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c2vyoA_
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d2c71a1
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c3rxzA_
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d1z7aa1
14
c3qbuD_
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c3s6oD_
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c1kwgA_
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d2nlya1
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d1kwga2
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d1k1xa3
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d2j13a1
99.9 18 Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:NodB-like polysaccharide deacetylase
2d2cc0a1
99.9 19 Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:NodB-like polysaccharide deacetylase
3d2iw0a1
99.9 19 Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:NodB-like polysaccharide deacetylase
4c1w17A_
99.9 21 PDB header:hydrolase
Chain: A: PDB Molecule:probable polysaccharide deacetylase pdaa;
PDBTitle: structure of bacillus subtilis pdaa, a family 42 carbohydrate esterase.
5c2iw0A_
99.9 19 PDB header:hydrolase
Chain: A: PDB Molecule:chitin deacetylase;
PDBTitle: structure of the chitin deacetylase from the fungal2 pathogen colletotrichum lindemuthianum
6d1ny1a_
99.9 22 Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:NodB-like polysaccharide deacetylase
7c2w3zA_
99.9 20 PDB header:hydrolase
Chain: A: PDB Molecule:putative deacetylase;
PDBTitle: structure of a streptococcus mutans ce4 esterase
8d2c1ia1
99.9 17 Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:NodB-like polysaccharide deacetylase
9c2c1iA_
99.9 16 PDB header:hydrolase
Chain: A: PDB Molecule:peptidoglycan glcnac deacetylase;
PDBTitle: structure of streptococcus pnemoniae peptidoglycan2 deacetylase (sppgda) d 275 n mutant.
10c2vyoA_
99.9 16 PDB header:hydrolase
Chain: A: PDB Molecule:chitooligosaccharide deacetylase;
PDBTitle: chitin deacetylase family member from encephalitozoon2 cuniculi
11d2c71a1
99.9 23 Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:NodB-like polysaccharide deacetylase
12c3rxzA_
99.7 22 PDB header:hydrolase
Chain: A: PDB Molecule:polysaccharide deacetylase;
PDBTitle: crystal structure of putative polysaccharide deacetylase from2 mycobacterium smegmatis
13d1z7aa1
99.7 11 Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:PA1517-like
14c3qbuD_
99.7 18 PDB header:hydrolase
Chain: D: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of putative peptidoglyacn deactelyase (hp0310) from2 helicobacter pylori
15c3s6oD_
99.7 14 PDB header:hydrolase
Chain: D: PDB Molecule:polysaccharide deacetylase family protein;
PDBTitle: crystal structure of a polysaccharide deacetylase family protein from2 burkholderia pseudomallei
16c1kwgA_
99.6 14 PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of thermus thermophilus a4 beta-galactosidase
17d2nlya1
99.4 17 Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:Divergent polysaccharide deacetylase
18d1kwga2
98.8 11 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
19d1k1xa3
98.6 10 Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:4-alpha-glucanotransferase, N-terminal domain
20d1m7xa3
98.5 11 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
21c1m7xC_
not modelled 98.5 18 PDB header:transferase
Chain: C: PDB Molecule:1,4-alpha-glucan branching enzyme;
PDBTitle: the x-ray crystallographic structure of branching enzyme
22c3bxwB_
not modelled 98.4 12 PDB header:hydrolase
Chain: B: PDB Molecule:chitinase domain-containing protein 1;
PDBTitle: crystal structure of stabilin-1 interacting chitinase-like2 protein, si-clp
23d1gvia3
not modelled 98.4 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
24d1j0ha3
not modelled 98.4 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
25d1ea9c3
not modelled 98.3 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
26c2xn1B_
not modelled 98.3 18 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-galactosidase;
PDBTitle: structure of alpha-galactosidase from lactobacillus acidophilus ncfm2 with tris
27d1avaa2
not modelled 98.3 12 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
28c2yfnA_
not modelled 98.3 17 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase-sucrose kinase agask;
PDBTitle: galactosidase domain of alpha-galactosidase-sucrose kinase,2 agask
29c2aaaA_
not modelled 98.2 11 PDB header:glycosidase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: calcium binding in alpha-amylases: an x-ray diffraction2 study at 2.1 angstroms resolution of two enzymes from3 aspergillus
30d1ht6a2
not modelled 98.2 11 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
31c3mi6A_
not modelled 98.1 15 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of the alpha-galactosidase from lactobacillus2 brevis, northeast structural genomics consortium target lbr11.
32d1h3ga3
not modelled 98.1 9 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
33c3u7vA_
not modelled 98.1 13 PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: the structure of a putative beta-galactosidase from caulobacter2 crescentus cb15.
34c1ehaA_
not modelled 98.1 14 PDB header:hydrolase
Chain: A: PDB Molecule:glycosyltrehalose trehalohydrolase;
PDBTitle: crystal structure of glycosyltrehalose trehalohydrolase2 from sulfolobus solfataricus
35c1gviA_
not modelled 98.1 14 PDB header:hydrolase
Chain: A: PDB Molecule:maltogenic amylase;
PDBTitle: thermus maltogenic amylase in complex with beta-cd
36c3cz8A_
not modelled 98.1 15 PDB header:hydrolase
Chain: A: PDB Molecule:putative sporulation-specific glycosylase ydhd;
PDBTitle: crystal structure of putative sporulation-specific glycosylase ydhd2 from bacillus subtilis
37c2vncB_
not modelled 98.0 19 PDB header:hydrolase
Chain: B: PDB Molecule:glycogen operon protein glgx;
PDBTitle: crystal structure of glycogen debranching enzyme trex from2 sulfolobus solfataricus
38d1ob0a2
not modelled 98.0 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
39d1qhoa4
not modelled 98.0 12 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
40d1bf2a3
not modelled 98.0 9 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
41d1wzla3
not modelled 98.0 12 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
42d2d3na2
not modelled 98.0 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
43d2bhua3
not modelled 98.0 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
44c2e8yA_
not modelled 98.0 16 PDB header:hydrolase
Chain: A: PDB Molecule:amyx protein;
PDBTitle: crystal structure of pullulanase type i from bacillus subtilis str.2 168
45d2fhfa5
not modelled 98.0 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
46c2zidA_
not modelled 98.0 11 PDB header:hydrolase
Chain: A: PDB Molecule:dextran glucosidase;
PDBTitle: crystal structure of dextran glucosidase e236q complex with2 isomaltotriose
47d2guya2
not modelled 98.0 12 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
48d1g5aa2
not modelled 98.0 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
49d2aaaa2
not modelled 98.0 11 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
50c1k1yA_
not modelled 98.0 13 PDB header:transferase
Chain: A: PDB Molecule:4-alpha-glucanotransferase;
PDBTitle: crystal structure of thermococcus litoralis 4-alpha-glucanotransferase2 complexed with acarbose
51c3amkA_
not modelled 98.0 16 PDB header:transferase
Chain: A: PDB Molecule:os06g0726400 protein;
PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l
52c1lwhA_
not modelled 97.9 16 PDB header:transferase
Chain: A: PDB Molecule:4-alpha-glucanotransferase;
PDBTitle: crystal structure of t. maritima 4-alpha-glucanotransferase
53c1jgiA_
not modelled 97.9 18 PDB header:transferase
Chain: A: PDB Molecule:amylosucrase;
PDBTitle: crystal structure of the active site mutant glu328gln of2 amylosucrase from neisseria polysaccharea in complex with3 the natural substrate sucrose
54c2z1kA_
not modelled 97.9 13 PDB header:hydrolase
Chain: A: PDB Molecule:(neo)pullulanase;
PDBTitle: crystal structure of ttha1563 from thermus thermophilus hb8
55c3czkA_
not modelled 97.9 12 PDB header:hydrolase
Chain: A: PDB Molecule:sucrose hydrolase;
PDBTitle: crystal structure analysis of sucrose hydrolase(suh) e322q-2 sucrose complex
56c1tcmB_
not modelled 97.9 11 PDB header:glycosyltransferase
Chain: B: PDB Molecule:cyclodextrin glycosyltransferase;
PDBTitle: cyclodextrin glycosyltransferase w616a mutant from bacillus2 circulans strain 251
57c3bmwA_
not modelled 97.9 14 PDB header:transferase
Chain: A: PDB Molecule:cyclomaltodextrin glucanotransferase;
PDBTitle: cyclodextrin glycosyl transferase from thermoanerobacterium2 thermosulfurigenes em1 mutant s77p complexed with a maltoheptaose3 inhibitor
58d1cgta4
not modelled 97.9 11 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
59c1e40A_
not modelled 97.9 15 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: tris/maltotriose complex of chimaeric amylase from b.2 amyloliquefaciens and b. licheniformis at 2.2a
60c2taaA_
not modelled 97.9 9 PDB header:hydrolase (o-glycosyl)
Chain: A: PDB Molecule:taka-amylase a;
PDBTitle: structure and possible catalytic residues of taka-amylase a
61c3edeB_
not modelled 97.9 13 PDB header:hydrolase
Chain: B: PDB Molecule:cyclomaltodextrinase;
PDBTitle: structural base for cyclodextrin hydrolysis
62c1ea9D_
not modelled 97.9 17 PDB header:hydrolase
Chain: D: PDB Molecule:cyclomaltodextrinase;
PDBTitle: cyclomaltodextrinase
63d1ud2a2
not modelled 97.9 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
64c1bf2A_
not modelled 97.9 9 PDB header:hydrolase
Chain: A: PDB Molecule:isoamylase;
PDBTitle: structure of pseudomonas isoamylase
65d1m53a2
not modelled 97.9 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
66d2gjpa2
not modelled 97.9 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
67d1gcya2
not modelled 97.9 11 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
68c2wanA_
not modelled 97.9 20 PDB header:hydrolase
Chain: A: PDB Molecule:pullulanase;
PDBTitle: pullulanase from bacillus acidopullulyticus
69d1e43a2
not modelled 97.8 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
70d1uoka2
not modelled 97.8 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
71d1eh9a3
not modelled 97.8 12 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
72c3dhuC_
not modelled 97.8 9 PDB header:hydrolase
Chain: C: PDB Molecule:alpha-amylase;
PDBTitle: crystal structure of an alpha-amylase from lactobacillus2 plantarum
73c1jibA_
not modelled 97.8 12 PDB header:hydrolase
Chain: A: PDB Molecule:neopullulanase;
PDBTitle: complex of alpha-amylase ii (tva ii) from thermoactinomyces2 vulgaris r-47 with maltotetraose based on a crystal soaked3 with maltohexaose.
74c1cygA_
not modelled 97.8 14 PDB header:glycosyltransferase
Chain: A: PDB Molecule:cyclodextrin glucanotransferase;
PDBTitle: cyclodextrin glucanotransferase (e.c.2.4.1.19) (cgtase)
75c1ud8A_
not modelled 97.8 16 PDB header:hydrolase
Chain: A: PDB Molecule:amylase;
PDBTitle: crystal structure of amyk38 with lithium ion
76c2wskA_
not modelled 97.8 15 PDB header:hydrolase
Chain: A: PDB Molecule:glycogen debranching enzyme;
PDBTitle: crystal structure of glycogen debranching enzyme glgx from2 escherichia coli k-12
77d1ua7a2
not modelled 97.8 10 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
78c2ya1A_
not modelled 97.8 16 PDB header:hydrolase
Chain: A: PDB Molecule:putative alkaline amylopullulanase;
PDBTitle: product complex of a multi-modular glycogen-degrading2 pneumococcal virulence factor spua
79c3a47A_
not modelled 97.8 9 PDB header:hydrolase
Chain: A: PDB Molecule:oligo-1,6-glucosidase;
PDBTitle: crystal structure of isomaltase from saccharomyces cerevisiae
80d1cyga4
not modelled 97.8 12 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
81d1lwha2
not modelled 97.8 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
82c3k1dA_
not modelled 97.8 15 PDB header:transferase
Chain: A: PDB Molecule:1,4-alpha-glucan-branching enzyme;
PDBTitle: crystal structure of glycogen branching enzyme synonym: 1,4-alpha-d-2 glucan:1,4-alpha-d-glucan 6-glucosyl-transferase from mycobacterium3 tuberculosis h37rv
83c3amlA_
not modelled 97.8 12 PDB header:transferase
Chain: A: PDB Molecule:os06g0726400 protein;
PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l
84c1zjaB_
not modelled 97.8 11 PDB header:isomerase
Chain: B: PDB Molecule:trehalulose synthase;
PDBTitle: crystal structure of the trehalulose synthase mutb from2 pseudomonas mesoacidophila mx-45 (triclinic form)
85d1cxla4
not modelled 97.7 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
86c1qhoA_
not modelled 97.7 14 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: five-domain alpha-amylase from bacillus stearothermophilus,2 maltose/acarbose complex
87c1ll4A_
not modelled 97.7 15 PDB header:hydrolase
Chain: A: PDB Molecule:chitinase 1;
PDBTitle: structure of c. immitis chitinase 1 complexed with2 allosamidin
88c3ucqA_
not modelled 97.7 12 PDB header:transferase
Chain: A: PDB Molecule:amylosucrase;
PDBTitle: crystal structure of amylosucrase from deinococcus geothermalis
89c2dh3A_
not modelled 97.7 19 PDB header:transport protein, signaling protein
Chain: A: PDB Molecule:4f2 cell-surface antigen heavy chain;
PDBTitle: crystal structure of human ed-4f2hc
90c3m07A_
not modelled 97.7 15 PDB header:unknown function
Chain: A: PDB Molecule:putative alpha amylase;
PDBTitle: 1.4 angstrom resolution crystal structure of putative alpha2 amylase from salmonella typhimurium.
91c2by0A_
not modelled 97.7 15 PDB header:hydrolase
Chain: A: PDB Molecule:maltooligosyltrehalose trehalohydrolase;
PDBTitle: is radiation damage dependent on the dose-rate used during2 macromolecular crystallography data collection
92c2wcsA_
not modelled 97.7 10 PDB header:hydrolase
Chain: A: PDB Molecule:alpha amylase, catalytic region;
PDBTitle: crystal structure of debranching enzyme from nostoc2 punctiforme (npde)
93c1uokA_
not modelled 97.7 15 PDB header:glucosidase
Chain: A: PDB Molecule:oligo-1,6-glucosidase;
PDBTitle: crystal structure of b. cereus oligo-1,6-glucosidase
94c2ze0A_
not modelled 97.7 12 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-glucosidase;
PDBTitle: alpha-glucosidase gsj
95c1itxA_
not modelled 97.7 16 PDB header:hydrolase
Chain: A: PDB Molecule:glycosyl hydrolase;
PDBTitle: catalytic domain of chitinase a1 from bacillus circulans wl-12
96c1wpcA_
not modelled 97.7 15 PDB header:hydrolase
Chain: A: PDB Molecule:glucan 1,4-alpha-maltohexaosidase;
PDBTitle: crystal structure of maltohexaose-producing amylase complexed with2 pseudo-maltononaose
97c1gcyA_
not modelled 97.7 12 PDB header:hydrolase
Chain: A: PDB Molecule:glucan 1,4-alpha-maltotetrahydrolase;
PDBTitle: high resolution crystal structure of maltotetraose-forming2 exo-amylase
98c1jd7A_
not modelled 97.7 14 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: crystal structure analysis of the mutant k300r of2 pseudoalteromonas haloplanctis alpha-amylase
99c2x4bA_
not modelled 97.7 21 PDB header:hydrolase
Chain: A: PDB Molecule:limit dextrinase;
PDBTitle: barley limit dextrinase in complex with beta-cyclodextrin
100c1jneA_
not modelled 97.7 14 PDB header:hormone/growth factor
Chain: A: PDB Molecule:imaginal disc growth factor-2;
PDBTitle: crystal structure of imaginal disc growth factor-2
101d1hvxa2
not modelled 97.7 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
102c2ya0A_
not modelled 97.6 13 PDB header:hydrolase
Chain: A: PDB Molecule:putative alkaline amylopullulanase;
PDBTitle: catalytic module of the multi-modular glycogen-degrading2 pneumococcal virulence factor spua
103d2b5dx2
not modelled 97.6 12 Fold:7-stranded beta/alpha barrel
Superfamily:Glycoside hydrolase/deacetylase
Family:AmyC N-terminal domain-like
104c1jdaA_
not modelled 97.6 13 PDB header:hydrolase
Chain: A: PDB Molecule:1,4-alpha maltotetrahydrolase;
PDBTitle: maltotetraose-forming exo-amylase
105c1m53A_
not modelled 97.6 12 PDB header:isomerase
Chain: A: PDB Molecule:isomaltulose synthase;
PDBTitle: crystal structure of isomaltulose synthase (pali) from2 klebsiella sp. lx3
106c1hjvA_
not modelled 97.6 11 PDB header:lectin
Chain: A: PDB Molecule:chitinase-3 like protein 1;
PDBTitle: crystal structure of hcgp-39 in complex with chitin2 tetramer
107c3faxA_
not modelled 97.5 13 PDB header:hydrolase
Chain: A: PDB Molecule:reticulocyte binding protein;
PDBTitle: the crystal structure of gbs pullulanase sap in complex with2 maltotetraose
108c2qpuB_
not modelled 97.5 12 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-amylase type a isozyme;
PDBTitle: sugar tongs mutant s378p in complex with acarbose
109c1e9lA_
not modelled 97.5 14 PDB header:macrophage secretory protein
Chain: A: PDB Molecule:ym1 secretory protein;
PDBTitle: the crystal structure of novel mammalian lectin ym12 suggests a saccharide binding site
110c3zt5D_
not modelled 97.5 15 PDB header:hydrolase
Chain: D: PDB Molecule:putative glucanohydrolase pep1a;
PDBTitle: glge isoform 1 from streptomyces coelicolor with maltose2 bound
111c2b5dX_
not modelled 97.4 12 PDB header:hydrolase
Chain: X: PDB Molecule:alpha-amylase;
PDBTitle: crystal structure of the novel alpha-amylase amyc from thermotoga2 maritima
112c3chfA_
not modelled 97.4 15 PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:chitinase;
PDBTitle: crystal structure of aspergillus fumigatus chitinase b1 in complex2 with tetrapeptide
113c1wzaA_
not modelled 97.4 13 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase a;
PDBTitle: crystal structure of alpha-amylase from h.orenii
114c1jaeA_
not modelled 97.4 15 PDB header:glycosidase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: structure of tenebrio molitor larval alpha-amylase
115d1pama4
not modelled 97.4 12 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
116c1hvxA_
not modelled 97.4 12 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: bacillus stearothermophilus alpha-amylase
117d3bmva4
not modelled 97.3 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
118c1bagA_
not modelled 97.3 8 PDB header:alpha-amylase
Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase;
PDBTitle: alpha-amylase from bacillus subtilis complexed with2 maltopentaose
119c2fhfA_
not modelled 97.3 16 PDB header:hydrolase
Chain: A: PDB Molecule:pullulanase;
PDBTitle: crystal structure analysis of klebsiella pneumoniae2 pullulanase complexed with maltotetraose
120c3g6lA_
not modelled 97.3 16 PDB header:hydrolase
Chain: A: PDB Molecule:chitinase;
PDBTitle: the crystal structure of a chitinase crchi1 from the nematophagous2 fungus clonostachys rosea

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0