Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP64426
DateThu Jan 5 12:08:13 GMT 2012
Unique Job ID54fa134418f64980

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template d1m7xa3
Top template information
Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
Confidence and coverage
Confidence: 99.6% Coverage: 37%
162 residues ( 37% of your sequence) have been modelled with 99.6% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
387 residues ( 88%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MDICSRNKKLTIRRPAILVALALLLCSCKSTPPESMVTPPAGSKPPATTQQSSQPMRGIW
Secondary structure 
SS confidence 
Disorder  ??????
???????????????????????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  LATVSRLDWPPVSSVNISNPTSRARVQQQAMIDKLDHLQRLGINTVFFQVKPDGTALWPS
Secondary structure 
SS confidence 
Disorder 
?
?
??????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  KILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWFNPYRVSVNTKPGTIRELNST
Secondary structure 
SS confidence 
Disorder 
??????
??
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  LSQQPASVYVQHRDWIRTSGDRFVLDPGIPEVQDWITSIVAEVVSRYPVDGVQFDDYFYT
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  ESPGSRLNDNETYRKYGGAFASKADWRRNNTQQLIAKVSHTIKSIKPGVEFGVSPAGVWR
Secondary structure 
SS confidence 
Disorder 
?
?
???
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  NRSHDPLGSDTRGAAAYDESYADTRRWVEQGLLDYIAPQIYWPFSRSAARYDVLAKWWAD
Secondary structure 
SS confidence 
Disorder 
??
????
?
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  VVKPTRTRLYIGIAFYKVGEPSKIEPDWMINGGVPELKKQLDLNDAVPEISGTILFREDY
Secondary structure 
SS confidence 
Disorder 
?
??????
?
??
Disorder confidence 
 
   .........430.........
Sequence  LNKPQTQQAVSYLQSRWGS
Secondary structure 
SS confidence 
Disorder 
???
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1m7x chain A domain 3

3D model

Region: 87 - 291
Aligned: 162
Modelled: 168
Confidence: 99.6%
Identity: 12%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Amylase, catalytic domain

Phyre2

PDB 1gvi chain A domain 3

3D model

Region: 89 - 291
Aligned: 169
Modelled: 173
Confidence: 99.6%
Identity: 19%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Amylase, catalytic domain

Phyre2

PDB 3amk chain A

3D model

Region: 75 - 291
Aligned: 207
Modelled: 217
Confidence: 99.5%
Identity: 14%
PDB header:transferase
Chain: A: PDB Molecule:os06g0726400 protein;
PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l

Phyre2

PDB 1ea9 chain C domain 3

3D model

Region: 89 - 291
Aligned: 166
Modelled: 173
Confidence: 99.5%
Identity: 23%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Amylase, catalytic domain

Phyre2

PDB 1gvi chain A

3D model

Region: 89 - 291
Aligned: 166
Modelled: 173
Confidence: 99.5%
Identity: 19%
PDB header:hydrolase
Chain: A: PDB Molecule:maltogenic amylase;
PDBTitle: thermus maltogenic amylase in complex with beta-cd

Phyre2

PDB 3ede chain B

3D model

Region: 89 - 291
Aligned: 173
Modelled: 173
Confidence: 99.5%
Identity: 16%
PDB header:hydrolase
Chain: B: PDB Molecule:cyclomaltodextrinase;
PDBTitle: structural base for cyclodextrin hydrolysis

Phyre2

PDB 2ya0 chain A

3D model

Region: 89 - 291
Aligned: 158
Modelled: 167
Confidence: 99.5%
Identity: 22%
PDB header:hydrolase
Chain: A: PDB Molecule:putative alkaline amylopullulanase;
PDBTitle: catalytic module of the multi-modular glycogen-degrading2 pneumococcal virulence factor spua

Phyre2

PDB 3aml chain A

3D model

Region: 75 - 291
Aligned: 207
Modelled: 217
Confidence: 99.5%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:os06g0726400 protein;
PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l

Phyre2

PDB 1j0h chain A domain 3

3D model

Region: 89 - 291
Aligned: 169
Modelled: 173
Confidence: 99.5%
Identity: 18%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Amylase, catalytic domain

Phyre2

PDB 3fax chain A

3D model

Region: 89 - 291
Aligned: 164
Modelled: 173
Confidence: 99.5%
Identity: 24%
PDB header:hydrolase
Chain: A: PDB Molecule:reticulocyte binding protein;
PDBTitle: the crystal structure of gbs pullulanase sap in complex with2 maltotetraose

Phyre2

PDB 1m7x chain C

3D model

Region: 87 - 291
Aligned: 162
Modelled: 164
Confidence: 99.5%
Identity: 12%
PDB header:transferase
Chain: C: PDB Molecule:1,4-alpha-glucan branching enzyme;
PDBTitle: the x-ray crystallographic structure of branching enzyme

Phyre2

PDB 3k1d chain A

3D model

Region: 87 - 291
Aligned: 190
Modelled: 205
Confidence: 99.5%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:1,4-alpha-glucan-branching enzyme;
PDBTitle: crystal structure of glycogen branching enzyme synonym: 1,4-alpha-d-2 glucan:1,4-alpha-d-glucan 6-glucosyl-transferase from mycobacterium3 tuberculosis h37rv

Phyre2

PDB 1bf2 chain A domain 3

3D model

Region: 89 - 291
Aligned: 192
Modelled: 197
Confidence: 99.5%
Identity: 19%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Amylase, catalytic domain

Phyre2

PDB 2ya1 chain A

3D model

Region: 89 - 291
Aligned: 163
Modelled: 164
Confidence: 99.5%
Identity: 20%
PDB header:hydrolase
Chain: A: PDB Molecule:putative alkaline amylopullulanase;
PDBTitle: product complex of a multi-modular glycogen-degrading2 pneumococcal virulence factor spua

Phyre2

PDB 1ea9 chain D

3D model

Region: 89 - 291
Aligned: 169
Modelled: 173
Confidence: 99.5%
Identity: 21%
PDB header:hydrolase
Chain: D: PDB Molecule:cyclomaltodextrinase;
PDBTitle: cyclomaltodextrinase

Phyre2

PDB 3czk chain A

3D model

Region: 89 - 291
Aligned: 181
Modelled: 186
Confidence: 99.4%
Identity: 17%
PDB header:hydrolase
Chain: A: PDB Molecule:sucrose hydrolase;
PDBTitle: crystal structure analysis of sucrose hydrolase(suh) e322q-2 sucrose complex

Phyre2

PDB 1ava chain A domain 2

3D model

Region: 89 - 235
Aligned: 140
Modelled: 141
Confidence: 99.4%
Identity: 16%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Amylase, catalytic domain

Phyre2

PDB 1kwg chain A

3D model

Region: 88 - 341
Aligned: 207
Modelled: 226
Confidence: 99.4%
Identity: 17%
PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of thermus thermophilus a4 beta-galactosidase

Phyre2

PDB 1jgi chain A

3D model

Region: 89 - 291
Aligned: 181
Modelled: 186
Confidence: 99.4%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:amylosucrase;
PDBTitle: crystal structure of the active site mutant glu328gln of2 amylosucrase from neisseria polysaccharea in complex with3 the natural substrate sucrose

Phyre2

PDB 1ht6 chain A domain 2

3D model

Region: 89 - 235
Aligned: 144
Modelled: 147
Confidence: 99.4%
Identity: 13%
Fold: TIM beta/alpha-barrel
Superfamily: (Trans)glycosidases
Family: Amylase, catalytic domain

Phyre2

PDB 2uy2 chain A

3D model

Region: 94 - 435
Aligned: 245
Modelled: 245
Confidence: 99.1%
Identity: 15%
PDB header:hydrolase
Chain: A: PDB Molecule:endochitinase;
PDBTitle: sccts1_apo crystal structure

Phyre2

PDB 3gh7 chain A

3D model

Region: 16 - 291
Aligned: 223
Modelled: 223
Confidence: 98.5%
Identity: 17%
PDB header:hydrolase
Chain: A: PDB Molecule:beta-hexosaminidase;
PDBTitle: crystal structure of beta-hexosaminidase from paenibacillus2 sp. ts12 in complex with galnac

Phyre2
1
d1m7xa3
2
d1gvia3
3
c3amkA_
4
d1ea9c3
5
c1gviA_
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c3edeB_
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c2ya0A_
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c3amlA_
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d1j0ha3
10
c3faxA_
11
c1m7xC_
12
c3k1dA_
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d1bf2a3
14
c2ya1A_
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c1ea9D_
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c3czkA_
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d1avaa2
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c1kwgA_
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c1jgiA_
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d1ht6a2
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c2uy2A_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1m7xa3
99.6 12 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
2d1gvia3
99.6 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
3c3amkA_
99.5 14 PDB header:transferase
Chain: A: PDB Molecule:os06g0726400 protein;
PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l
4d1ea9c3
99.5 23 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
5c1gviA_
99.5 19 PDB header:hydrolase
Chain: A: PDB Molecule:maltogenic amylase;
PDBTitle: thermus maltogenic amylase in complex with beta-cd
6c3edeB_
99.5 16 PDB header:hydrolase
Chain: B: PDB Molecule:cyclomaltodextrinase;
PDBTitle: structural base for cyclodextrin hydrolysis
7c2ya0A_
99.5 22 PDB header:hydrolase
Chain: A: PDB Molecule:putative alkaline amylopullulanase;
PDBTitle: catalytic module of the multi-modular glycogen-degrading2 pneumococcal virulence factor spua
8c3amlA_
99.5 15 PDB header:transferase
Chain: A: PDB Molecule:os06g0726400 protein;
PDBTitle: structure of the starch branching enzyme i (bei) from oryza sativa l
9d1j0ha3
99.5 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
10c3faxA_
99.5 24 PDB header:hydrolase
Chain: A: PDB Molecule:reticulocyte binding protein;
PDBTitle: the crystal structure of gbs pullulanase sap in complex with2 maltotetraose
11c1m7xC_
99.5 12 PDB header:transferase
Chain: C: PDB Molecule:1,4-alpha-glucan branching enzyme;
PDBTitle: the x-ray crystallographic structure of branching enzyme
12c3k1dA_
99.5 16 PDB header:transferase
Chain: A: PDB Molecule:1,4-alpha-glucan-branching enzyme;
PDBTitle: crystal structure of glycogen branching enzyme synonym: 1,4-alpha-d-2 glucan:1,4-alpha-d-glucan 6-glucosyl-transferase from mycobacterium3 tuberculosis h37rv
13d1bf2a3
99.5 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
14c2ya1A_
99.5 20 PDB header:hydrolase
Chain: A: PDB Molecule:putative alkaline amylopullulanase;
PDBTitle: product complex of a multi-modular glycogen-degrading2 pneumococcal virulence factor spua
15c1ea9D_
99.5 21 PDB header:hydrolase
Chain: D: PDB Molecule:cyclomaltodextrinase;
PDBTitle: cyclomaltodextrinase
16c3czkA_
99.4 17 PDB header:hydrolase
Chain: A: PDB Molecule:sucrose hydrolase;
PDBTitle: crystal structure analysis of sucrose hydrolase(suh) e322q-2 sucrose complex
17d1avaa2
99.4 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
18c1kwgA_
99.4 17 PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: crystal structure of thermus thermophilus a4 beta-galactosidase
19c1jgiA_
99.4 18 PDB header:transferase
Chain: A: PDB Molecule:amylosucrase;
PDBTitle: crystal structure of the active site mutant glu328gln of2 amylosucrase from neisseria polysaccharea in complex with3 the natural substrate sucrose
20d1ht6a2
99.4 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
21d1gcya2
not modelled 99.4 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
22c1tcmB_
not modelled 99.4 19 PDB header:glycosyltransferase
Chain: B: PDB Molecule:cyclodextrin glycosyltransferase;
PDBTitle: cyclodextrin glycosyltransferase w616a mutant from bacillus2 circulans strain 251
23c1bf2A_
not modelled 99.4 20 PDB header:hydrolase
Chain: A: PDB Molecule:isoamylase;
PDBTitle: structure of pseudomonas isoamylase
24c2e8yA_
not modelled 99.4 19 PDB header:hydrolase
Chain: A: PDB Molecule:amyx protein;
PDBTitle: crystal structure of pullulanase type i from bacillus subtilis str.2 168
25d1g5aa2
not modelled 99.4 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
26d1h3ga3
not modelled 99.4 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
27c3mi6A_
not modelled 99.4 19 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of the alpha-galactosidase from lactobacillus2 brevis, northeast structural genomics consortium target lbr11.
28c1cygA_
not modelled 99.4 20 PDB header:glycosyltransferase
Chain: A: PDB Molecule:cyclodextrin glucanotransferase;
PDBTitle: cyclodextrin glucanotransferase (e.c.2.4.1.19) (cgtase)
29c3bmwA_
not modelled 99.4 20 PDB header:transferase
Chain: A: PDB Molecule:cyclomaltodextrin glucanotransferase;
PDBTitle: cyclodextrin glycosyl transferase from thermoanerobacterium2 thermosulfurigenes em1 mutant s77p complexed with a maltoheptaose3 inhibitor
30c2wanA_
not modelled 99.4 22 PDB header:hydrolase
Chain: A: PDB Molecule:pullulanase;
PDBTitle: pullulanase from bacillus acidopullulyticus
31c1jibA_
not modelled 99.4 17 PDB header:hydrolase
Chain: A: PDB Molecule:neopullulanase;
PDBTitle: complex of alpha-amylase ii (tva ii) from thermoactinomyces2 vulgaris r-47 with maltotetraose based on a crystal soaked3 with maltohexaose.
32c3ucqA_
not modelled 99.4 16 PDB header:transferase
Chain: A: PDB Molecule:amylosucrase;
PDBTitle: crystal structure of amylosucrase from deinococcus geothermalis
33c1qhoA_
not modelled 99.4 19 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: five-domain alpha-amylase from bacillus stearothermophilus,2 maltose/acarbose complex
34c3dhuC_
not modelled 99.4 17 PDB header:hydrolase
Chain: C: PDB Molecule:alpha-amylase;
PDBTitle: crystal structure of an alpha-amylase from lactobacillus2 plantarum
35c1gcyA_
not modelled 99.4 16 PDB header:hydrolase
Chain: A: PDB Molecule:glucan 1,4-alpha-maltotetrahydrolase;
PDBTitle: high resolution crystal structure of maltotetraose-forming2 exo-amylase
36c3a47A_
not modelled 99.4 14 PDB header:hydrolase
Chain: A: PDB Molecule:oligo-1,6-glucosidase;
PDBTitle: crystal structure of isomaltase from saccharomyces cerevisiae
37d1m53a2
not modelled 99.4 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
38c1ehaA_
not modelled 99.4 25 PDB header:hydrolase
Chain: A: PDB Molecule:glycosyltrehalose trehalohydrolase;
PDBTitle: crystal structure of glycosyltrehalose trehalohydrolase2 from sulfolobus solfataricus
39d2bhua3
not modelled 99.4 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
40c2wcsA_
not modelled 99.4 18 PDB header:hydrolase
Chain: A: PDB Molecule:alpha amylase, catalytic region;
PDBTitle: crystal structure of debranching enzyme from nostoc2 punctiforme (npde)
41d2fhfa5
not modelled 99.4 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
42c2wskA_
not modelled 99.4 20 PDB header:hydrolase
Chain: A: PDB Molecule:glycogen debranching enzyme;
PDBTitle: crystal structure of glycogen debranching enzyme glgx from2 escherichia coli k-12
43d1wzla3
not modelled 99.4 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
44c2qpuB_
not modelled 99.4 13 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-amylase type a isozyme;
PDBTitle: sugar tongs mutant s378p in complex with acarbose
45d2aaaa2
not modelled 99.4 24 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
46c2vncB_
not modelled 99.4 15 PDB header:hydrolase
Chain: B: PDB Molecule:glycogen operon protein glgx;
PDBTitle: crystal structure of glycogen debranching enzyme trex from2 sulfolobus solfataricus
47d1uoka2
not modelled 99.4 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
48c1jdaA_
not modelled 99.3 18 PDB header:hydrolase
Chain: A: PDB Molecule:1,4-alpha maltotetrahydrolase;
PDBTitle: maltotetraose-forming exo-amylase
49c2xn1B_
not modelled 99.3 18 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-galactosidase;
PDBTitle: structure of alpha-galactosidase from lactobacillus acidophilus ncfm2 with tris
50d1cgta4
not modelled 99.3 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
51d3bmva4
not modelled 99.3 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
52c3m07A_
not modelled 99.3 17 PDB header:unknown function
Chain: A: PDB Molecule:putative alpha amylase;
PDBTitle: 1.4 angstrom resolution crystal structure of putative alpha2 amylase from salmonella typhimurium.
53c2aaaA_
not modelled 99.3 20 PDB header:glycosidase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: calcium binding in alpha-amylases: an x-ray diffraction2 study at 2.1 angstroms resolution of two enzymes from3 aspergillus
54c2by0A_
not modelled 99.3 15 PDB header:hydrolase
Chain: A: PDB Molecule:maltooligosyltrehalose trehalohydrolase;
PDBTitle: is radiation damage dependent on the dose-rate used during2 macromolecular crystallography data collection
55c1hvxA_
not modelled 99.3 22 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: bacillus stearothermophilus alpha-amylase
56d2guya2
not modelled 99.3 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
57d1qhoa4
not modelled 99.3 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
58c2dh3A_
not modelled 99.3 19 PDB header:transport protein, signaling protein
Chain: A: PDB Molecule:4f2 cell-surface antigen heavy chain;
PDBTitle: crystal structure of human ed-4f2hc
59c1wpcA_
not modelled 99.3 19 PDB header:hydrolase
Chain: A: PDB Molecule:glucan 1,4-alpha-maltohexaosidase;
PDBTitle: crystal structure of maltohexaose-producing amylase complexed with2 pseudo-maltononaose
60c2fhfA_
not modelled 99.3 24 PDB header:hydrolase
Chain: A: PDB Molecule:pullulanase;
PDBTitle: crystal structure analysis of klebsiella pneumoniae2 pullulanase complexed with maltotetraose
61c3zt5D_
not modelled 99.3 17 PDB header:hydrolase
Chain: D: PDB Molecule:putative glucanohydrolase pep1a;
PDBTitle: glge isoform 1 from streptomyces coelicolor with maltose2 bound
62d1hvxa2
not modelled 99.3 22 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
63c1jd7A_
not modelled 99.3 15 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: crystal structure analysis of the mutant k300r of2 pseudoalteromonas haloplanctis alpha-amylase
64d1cxla4
not modelled 99.3 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
65c2taaA_
not modelled 99.3 19 PDB header:hydrolase (o-glycosyl)
Chain: A: PDB Molecule:taka-amylase a;
PDBTitle: structure and possible catalytic residues of taka-amylase a
66c2zidA_
not modelled 99.3 18 PDB header:hydrolase
Chain: A: PDB Molecule:dextran glucosidase;
PDBTitle: crystal structure of dextran glucosidase e236q complex with2 isomaltotriose
67d1ua7a2
not modelled 99.3 11 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
68d1eh9a3
not modelled 99.3 21 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
69d1cyga4
not modelled 99.3 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
70c1wzaA_
not modelled 99.3 22 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase a;
PDBTitle: crystal structure of alpha-amylase from h.orenii
71d1ob0a2
not modelled 99.3 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
72c2yfnA_
not modelled 99.3 19 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase-sucrose kinase agask;
PDBTitle: galactosidase domain of alpha-galactosidase-sucrose kinase,2 agask
73c1e40A_
not modelled 99.3 21 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: tris/maltotriose complex of chimaeric amylase from b.2 amyloliquefaciens and b. licheniformis at 2.2a
74c1uokA_
not modelled 99.3 14 PDB header:glucosidase
Chain: A: PDB Molecule:oligo-1,6-glucosidase;
PDBTitle: crystal structure of b. cereus oligo-1,6-glucosidase
75d1pama4
not modelled 99.3 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
76c2ze0A_
not modelled 99.3 16 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-glucosidase;
PDBTitle: alpha-glucosidase gsj
77d2gjpa2
not modelled 99.3 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
78c1m53A_
not modelled 99.3 18 PDB header:isomerase
Chain: A: PDB Molecule:isomaltulose synthase;
PDBTitle: crystal structure of isomaltulose synthase (pali) from2 klebsiella sp. lx3
79c1lwhA_
not modelled 99.2 18 PDB header:transferase
Chain: A: PDB Molecule:4-alpha-glucanotransferase;
PDBTitle: crystal structure of t. maritima 4-alpha-glucanotransferase
80c1bagA_
not modelled 99.2 15 PDB header:alpha-amylase
Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase;
PDBTitle: alpha-amylase from bacillus subtilis complexed with2 maltopentaose
81c1zjaB_
not modelled 99.2 18 PDB header:isomerase
Chain: B: PDB Molecule:trehalulose synthase;
PDBTitle: crystal structure of the trehalulose synthase mutb from2 pseudomonas mesoacidophila mx-45 (triclinic form)
82d1ud2a2
not modelled 99.2 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
83c1ud8A_
not modelled 99.2 16 PDB header:hydrolase
Chain: A: PDB Molecule:amylase;
PDBTitle: crystal structure of amyk38 with lithium ion
84c2z1kA_
not modelled 99.2 15 PDB header:hydrolase
Chain: A: PDB Molecule:(neo)pullulanase;
PDBTitle: crystal structure of ttha1563 from thermus thermophilus hb8
85c1zy9A_
not modelled 99.2 18 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-galactosidase;
PDBTitle: crystal structure of alpha-galactosidase (ec 3.2.1.22) (melibiase)2 (tm1192) from thermotoga maritima at 2.34 a resolution
86d1lwha2
not modelled 99.2 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
87c2x4bA_
not modelled 99.2 19 PDB header:hydrolase
Chain: A: PDB Molecule:limit dextrinase;
PDBTitle: barley limit dextrinase in complex with beta-cyclodextrin
88d1e43a2
not modelled 99.2 16 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
89c3blpX_
not modelled 99.2 11 PDB header:hydrolase
Chain: X: PDB Molecule:alpha-amylase 1;
PDBTitle: role of aromatic residues in human salivary alpha-amylase
90d1hl9a2
not modelled 99.2 22 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Putative alpha-L-fucosidase, catalytic domain
91c1jaeA_
not modelled 99.2 15 PDB header:glycosidase
Chain: A: PDB Molecule:alpha-amylase;
PDBTitle: structure of tenebrio molitor larval alpha-amylase
92d1hx0a2
not modelled 99.2 10 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
93d2d3na2
not modelled 99.2 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
94d1wzaa2
not modelled 99.2 25 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
95c3bc9A_
not modelled 99.1 14 PDB header:hydrolase
Chain: A: PDB Molecule:alpha amylase, catalytic region;
PDBTitle: alpha-amylase b in complex with acarbose
96d1mxga2
not modelled 99.1 20 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
97d3dhpa2
not modelled 99.1 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
98d1g94a2
not modelled 99.1 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
99c2uy2A_
99.1 15 PDB header:hydrolase
Chain: A: PDB Molecule:endochitinase;
PDBTitle: sccts1_apo crystal structure
100c2d0gA_
not modelled 99.1 18 PDB header:hydrolase
Chain: A: PDB Molecule:alpha-amylase i;
PDBTitle: crystal structure of thermoactinomyces vulgaris r-47 alpha-2 amylase 1 (tvai) mutant d356n/e396q complexed with p5, a3 pullulan model oligosaccharide
101c1hl8B_
not modelled 99.0 22 PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-l-fucosidase;
PDBTitle: crystal structure of thermotoga maritima alpha-fucosidase
102c3u7vA_
not modelled 99.0 14 PDB header:hydrolase
Chain: A: PDB Molecule:beta-galactosidase;
PDBTitle: the structure of a putative beta-galactosidase from caulobacter2 crescentus cb15.
103c1mwoA_
not modelled 99.0 17 PDB header:hydrolase
Chain: A: PDB Molecule:alpha amylase;
PDBTitle: crystal structure analysis of the hyperthermostable2 pyrocoocus woesei alpha-amylase
104c3co4A_
not modelled 99.0 20 PDB header:hydrolase
Chain: A: PDB Molecule:chitinase;
PDBTitle: crystal structure of a chitinase from bacteroides2 thetaiotaomicron
105d1cnva_
not modelled 99.0 18 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Type II chitinase
106d1jaea2
not modelled 99.0 15 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
107c3cz8A_
not modelled 99.0 16 PDB header:hydrolase
Chain: A: PDB Molecule:putative sporulation-specific glycosylase ydhd;
PDBTitle: crystal structure of putative sporulation-specific glycosylase ydhd2 from bacillus subtilis
108d2hvma_
not modelled 99.0 17 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Type II chitinase
109d1ji1a3
not modelled 98.9 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
110d1nowa1
not modelled 98.9 13 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:beta-N-acetylhexosaminidase catalytic domain
111d1zy9a2
not modelled 98.9 19 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:YicI catalytic domain-like
112c2gsjA_
not modelled 98.9 18 PDB header:hydrolase
Chain: A: PDB Molecule:protein ppl-2;
PDBTitle: cdna cloning and 1.75a crystal structure determination of2 ppl2, a novel chimerolectin from parkia platycephala seeds3 exhibiting endochitinolytic activity
113d1kwga2
not modelled 98.9 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
114c2gdvA_
not modelled 98.8 11 PDB header:transferase
Chain: A: PDB Molecule:sucrose phosphorylase;
PDBTitle: sucrose phosphorylase from bifidobacterium adolescentis2 reacted with sucrose
115c2xucA_
not modelled 98.8 19 PDB header:hydrolase
Chain: A: PDB Molecule:chitinase;
PDBTitle: natural product-guided discovery of a fungal chitinase2 inhibitor
116c3mo4B_
not modelled 98.8 21 PDB header:hydrolase
Chain: B: PDB Molecule:alpha-1,3/4-fucosidase;
PDBTitle: the crystal structure of an alpha-(1-3,4)-fucosidase from2 bifidobacterium longum subsp. infantis atcc 15697
117c3gzaB_
not modelled 98.8 14 PDB header:hydrolase
Chain: B: PDB Molecule:putative alpha-l-fucosidase;
PDBTitle: crystal structure of putative alpha-l-fucosidase (np_812709.1) from2 bacteroides thetaiotaomicron vpi-5482 at 1.60 a resolution
118d1gjwa2
not modelled 98.7 14 Fold:TIM beta/alpha-barrel
Superfamily:(Trans)glycosidases
Family:Amylase, catalytic domain
119c3n12A_
not modelled 98.7 18 PDB header:hydrolase
Chain: A: PDB Molecule:chitinase a;
PDBTitle: crystal stricture of chitinase in complex with zinc atoms from2 bacillus cereus nctu2
120c3pzqA_
not modelled 98.7 13 PDB header:hydrolase
Chain: A: PDB Molecule:mannan endo-1,4-beta-mannosidase. glycosyl hydrolase family
PDBTitle: structure of the hyperthermostable endo-1,4-beta-d-mannanase from2 thermotoga petrophila rku-1 with maltose and glycerol

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0