1 d1wlja_
99.9
35
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease2 d2guia1
99.7
19
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease3 d2igia1
99.6
19
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease4 d1j9aa_
99.6
16
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease5 c2p1jB_
99.5
21
PDB header: transferaseChain: B: PDB Molecule: dna polymerase iii polc-type;PDBTitle: crystal structure of a polc-type dna polymerase iii2 exonuclease domain from thermotoga maritima
6 c2gbzA_
99.5
17
PDB header: hydrolaseChain: A: PDB Molecule: oligoribonuclease;PDBTitle: the crystal structure of xc847 from xanthomonas campestris: a 3-52 oligoribonuclease of dnaq fold family with a novel opposingly-shifted3 helix
7 c3tr8A_
99.5
20
PDB header: hydrolaseChain: A: PDB Molecule: oligoribonuclease;PDBTitle: structure of an oligoribonuclease (orn) from coxiella burnetii
8 c3cm6A_
99.5
14
PDB header: hydrolase, apoptosisChain: A: PDB Molecule: cell death-related nuclease 4;PDBTitle: crystal structure of cell-death related nuclease 4 (crn-4)2 bound with er
9 d1w0ha_
99.5
15
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease10 c1zbhA_
99.5
16
PDB header: hydrolase/rnaChain: A: PDB Molecule: 3'-5' exonuclease eri1;PDBTitle: 3'-end specific recognition of histone mrna stem-loop by 3'-2 exonuclease
11 c2xriA_
99.4
17
PDB header: hydrolaseChain: A: PDB Molecule: eri1 exoribonuclease 3;PDBTitle: crystal structure of human eri1 exoribonuclease 3
12 d1y97a1
99.4
15
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease13 d2f96a1
99.3
19
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease14 c3u6fA_
99.3
20
PDB header: hydrolase/dnaChain: A: PDB Molecule: three prime repair exonuclease 1;PDBTitle: mouse trex1 d200n mutant
15 d3b6oa1
99.3
20
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease16 c1zbuB_
99.3
16
PDB header: hydrolaseChain: B: PDB Molecule: 3'-5' exonuclease eri1;PDBTitle: crystal structure of full-length 3'-exonuclease
17 d2qxfa1
99.2
15
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease18 c2is3B_
98.6
16
PDB header: hydrolaseChain: B: PDB Molecule: ribonuclease t;PDBTitle: crystal structure of escherichia coli rnase t
19 d1kfsa1
98.3
18
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease20 c2e6mA_
98.3
16
PDB header: hydrolaseChain: A: PDB Molecule: werner syndrome atp-dependent helicase homolog;PDBTitle: structure of mouse werner exonuclease domain
21 c1yt3A_
not modelled
98.2
19
PDB header: hydrolase,translationChain: A: PDB Molecule: ribonuclease d;PDBTitle: crystal structure of escherichia coli rnase d, an2 exoribonuclease involved in structured rna processing
22 c2kzzA_
not modelled
98.2
18
PDB header: transferase/dnaChain: A: PDB Molecule: protein (dna polymerase i);PDBTitle: klenow fragment with normal substrate and zinc only
23 d1yt3a3
not modelled
97.9
20
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease24 c2xcmE_
97.5
21
PDB header: chaperone/protein bindingChain: E: PDB Molecule: rar1;PDBTitle: complex of hsp90 n-terminal, sgt1 cs and rar1 chord2 domain
25 d2hbka2
not modelled
97.5
21
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease26 c3cymA_
not modelled
97.5
18
PDB header: structural genomics, unknown functionChain: A: PDB Molecule: uncharacterized protein bad_0989;PDBTitle: crystal structure of protein bad_0989 from bifidobacterium2 adolescentis
27 c2hbkA_
not modelled
97.4
22
PDB header: hydrolase, gene regulationChain: A: PDB Molecule: exosome complex exonuclease rrp6;PDBTitle: structure of the yeast nuclear exosome component, rrp6p,2 reveals an interplay between the active site and the hrdc3 domain; protein in complex with mn
28 d1uoca_
not modelled
97.3
19
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: CAF1-like ribonuclease29 c2yrtA_
97.2
27
PDB header: transcriptionChain: A: PDB Molecule: chord containing protein-1;PDBTitle: solution structure of the chord domain of human chord-2 containing protein 1
30 c1njzA_
not modelled
97.1
16
PDB header: transferase/dnaChain: A: PDB Molecule: dna polymerase i;PDBTitle: cytosine-thymine mismatch at the polymerase active site
31 c3sahA_
not modelled
97.1
21
PDB header: hydrolaseChain: A: PDB Molecule: exosome component 10;PDBTitle: crystal structure of the human rrp6 catalytic domain with y436a2 mutation in the catalytic site
32 d1vk0a_
not modelled
97.1
20
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease33 d2d5ra1
not modelled
97.0
16
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: CAF1-like ribonuclease34 c2p51A_
not modelled
97.0
17
PDB header: hydrolase, gene regulationChain: A: PDB Molecule: spcc18.06c protein;PDBTitle: crystal structure of the s. pombe pop2p deadenylation2 subunit
35 d2hhva1
not modelled
96.8
16
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease36 d1wn7a1
not modelled
96.4
17
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease37 d1tgoa1
not modelled
95.9
15
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease38 c2k0nA_
95.3
11
PDB header: transcriptionChain: A: PDB Molecule: mediator of rna polymerase ii transcriptionPDBTitle: solution structure of yeast gal11p kix domain
39 d1qhta1
not modelled
95.0
17
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease40 c4ktqA_
not modelled
94.8
17
PDB header: transferase/dnaChain: A: PDB Molecule: protein (large fragment of dna polymerase i);PDBTitle: binary complex of the large fragment of dna polymerase i2 from t. aquaticus bound to a primer/template dna
41 d1d5aa1
not modelled
94.5
16
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease42 c1q8iA_
not modelled
94.3
19
PDB header: transferaseChain: A: PDB Molecule: dna polymerase ii;PDBTitle: crystal structure of escherichia coli dna polymerase ii
43 d1q8ia1
not modelled
94.0
20
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease44 c2dtuA_
not modelled
93.7
19
PDB header: transferase/dnaChain: A: PDB Molecule: dna polymerase;PDBTitle: crystal structure of the beta hairpin loop deletion variant2 of rb69 gp43 in complex with dna containing an abasic site3 analog
45 c1s5jA_
not modelled
93.1
18
PDB header: transferaseChain: A: PDB Molecule: dna polymerase i;PDBTitle: insight in dna replication: the crystal structure of dna2 polymerase b1 from the archaeon sulfolobus solfataricus
46 d1ih7a1
not modelled
92.3
17
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease47 c3iayA_
not modelled
91.4
21
PDB header: transferase/dnaChain: A: PDB Molecule: dna polymerase delta catalytic subunit;PDBTitle: ternary complex of dna polymerase delta
48 c1tk0A_
not modelled
91.0
15
PDB header: transferase/electron transport/dnaChain: A: PDB Molecule: dna polymerase;PDBTitle: t7 dna polymerase ternary complex with 8 oxo guanosine and2 ddctp at the insertion site
49 c2a1sC_
not modelled
89.5
17
PDB header: hydrolaseChain: C: PDB Molecule: poly(a)-specific ribonuclease parn;PDBTitle: crystal structure of native parn nuclease domain
50 d1s5ja1
not modelled
89.3
16
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease51 c1d5aA_
not modelled
88.9
19
PDB header: transferaseChain: A: PDB Molecule: protein (dna polymerase);PDBTitle: crystal structure of an archaebacterial dna polymerase2 d.tok. deposition of second native structure at 2.43 angstrom
52 c3d45B_
not modelled
86.4
15
PDB header: hydrolaseChain: B: PDB Molecule: poly(a)-specific ribonuclease parn;PDBTitle: crystal structure of mouse parn in complex with m7gpppg
53 d1noya_
not modelled
86.3
14
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease54 c2ys2A_
not modelled
84.9
25
PDB header: transferaseChain: A: PDB Molecule: cytoplasmic tyrosine-protein kinase bmx;PDBTitle: solution structure of the btk motif of human cytoplasmic2 tyrosine-protein kinase bmx
55 d1x9ma1
not modelled
84.4
18
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: DnaQ-like 3'-5' exonuclease56 c2e6iA_
84.2
15
PDB header: transferaseChain: A: PDB Molecule: tyrosine-protein kinase itk/tsk;PDBTitle: solution structure of the btk motif of tyrosine-protein2 kinase itk from human
57 d1btka_
not modelled
82.5
34
Fold: PH domain-like barrelSuperfamily: PH domain-likeFamily: Pleckstrin-homology domain (PH domain)58 c2vwkA_
not modelled
82.0
18
PDB header: dna replicationChain: A: PDB Molecule: dna polymerase;PDBTitle: uracil recognition in archaeal dna polymerases captured by2 x-ray crystallography. v93q polymerase variant
59 c2gv9B_
not modelled
81.9
13
PDB header: transferaseChain: B: PDB Molecule: dna polymerase;PDBTitle: crystal structure of the herpes simplex virus type 1 dna polymerase
60 c1i6vD_
78.7
31
PDB header: transcriptionChain: D: PDB Molecule: dna-directed rna polymerase;PDBTitle: thermus aquaticus core rna polymerase-rifampicin complex
61 d1i6vd_
78.7
31
Fold: beta and beta-prime subunits of DNA dependent RNA-polymeraseSuperfamily: beta and beta-prime subunits of DNA dependent RNA-polymeraseFamily: RNA-polymerase beta-prime62 d1ynjd1
76.4
29
Fold: beta and beta-prime subunits of DNA dependent RNA-polymeraseSuperfamily: beta and beta-prime subunits of DNA dependent RNA-polymeraseFamily: RNA-polymerase beta-prime63 c1cmwA_
not modelled
74.5
18
PDB header: transferaseChain: A: PDB Molecule: protein (dna polymerase i);PDBTitle: crystal structure of taq dna-polymerase shows a new orientation for2 the structure-specific nuclease domain
64 c2gutA_
not modelled
74.3
12
PDB header: transcriptionChain: A: PDB Molecule: arc/mediator, positive cofactor 2 glutamine/q-PDBTitle: solution structure of the trans-activation domain of the2 human co-activator arc105
65 c3bdvB_
not modelled
60.2
35
PDB header: hydrolaseChain: B: PDB Molecule: uncharacterized protein duf1234;PDBTitle: crystal structure of a putative yden-like hydrolase (eca3091) from2 pectobacterium atrosepticum scri1043 at 1.66 a resolution
66 d3bzka5
not modelled
56.7
27
Fold: Ribonuclease H-like motifSuperfamily: Ribonuclease H-likeFamily: Tex RuvX-like domain-like67 c3ho6B_
not modelled
53.1
16
PDB header: toxinChain: B: PDB Molecule: toxin a;PDBTitle: structure-function analysis of inositol hexakisphosphate-2 induced autoprocessing in clostridium difficile toxin a
68 c3qqcA_
not modelled
51.2
18
PDB header: transcriptionChain: A: PDB Molecule: dna-directed rna polymerase subunit b, dna-directed rnaPDBTitle: crystal structure of archaeal spt4/5 bound to the rnap clamp domain
69 c3zyqA_
not modelled
48.2
14
PDB header: signalingChain: A: PDB Molecule: hepatocyte growth factor-regulated tyrosine kinasePDBTitle: crystal structure of the tandem vhs and fyve domains of hepatocyte2 growth factor-regulated tyrosine kinase substrate (hgs-hrs) at 1.483 a resolution
70 d1wiga2
not modelled
45.8
21
Fold: Glucocorticoid receptor-like (DNA-binding domain)Superfamily: Glucocorticoid receptor-like (DNA-binding domain)Family: LIM domain71 c1dvpA_
not modelled
42.4
18
PDB header: transferaseChain: A: PDB Molecule: hepatocyte growth factor-regulated tyrosinePDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction
72 c1pqvS_
not modelled
40.0
15
PDB header: transferase/transcriptionChain: S: PDB Molecule: transcription elongation factor s-ii;PDBTitle: rna polymerase ii-tfiis complex
73 c1y1yS_
not modelled
40.0
15
PDB header: transferase/transcription/dna-rna hybridChain: S: PDB Molecule: transcription elongation factor s-ii;PDBTitle: rna polymerase ii-tfiis-dna/rna complex
74 d1wfla_
not modelled
38.8
26
Fold: AN1-like Zinc fingerSuperfamily: AN1-like Zinc fingerFamily: AN1-like Zinc finger75 c2kvfA_
not modelled
37.8
30
PDB header: transcriptionChain: A: PDB Molecule: zinc finger and btb domain-containing protein 32;PDBTitle: structure of the three-cys2his2 domain of mouse testis zinc2 finger protein
76 d1sb0a_
not modelled
34.5
11
Fold: Kix domain of CBP (creb binding protein)Superfamily: Kix domain of CBP (creb binding protein)Family: Kix domain of CBP (creb binding protein)77 c3hz6A_
not modelled
33.1
16
PDB header: transferaseChain: A: PDB Molecule: xylulokinase;PDBTitle: crystal structure of xylulokinase from chromobacterium violaceum
78 c2e72A_
not modelled
32.8
31
PDB header: structural genomics, unknown functionChain: A: PDB Molecule: pogo transposable element with znf domain;PDBTitle: solution structure of the zinc finger domain of human2 kiaa0461
79 d1ibia1
not modelled
32.4
25
Fold: Glucocorticoid receptor-like (DNA-binding domain)Superfamily: Glucocorticoid receptor-like (DNA-binding domain)Family: LIM domain80 c2cftA_
not modelled
32.2
15
PDB header: phosphataseChain: A: PDB Molecule: pyridoxal phosphate phosphatase;PDBTitle: crystal structure of human pyridoxal 5'-phosphate2 phosphatase with its substrate
81 d1g47a1
not modelled
31.5
32
Fold: Glucocorticoid receptor-like (DNA-binding domain)Superfamily: Glucocorticoid receptor-like (DNA-binding domain)Family: LIM domain82 d1gpla2
not modelled
31.4
34
Fold: alpha/beta-HydrolasesSuperfamily: alpha/beta-HydrolasesFamily: Pancreatic lipase, N-terminal domain83 d1x6ha1
not modelled
30.2
44
Fold: beta-beta-alpha zinc fingersSuperfamily: beta-beta-alpha zinc fingersFamily: Classic zinc finger, C2H284 c3psfA_
not modelled
29.8
18
PDB header: transcriptionChain: A: PDB Molecule: transcription elongation factor spt6;PDBTitle: crystal structure of the spt6 core domain from saccharomyces2 cerevisiae, form spt6(236-1259)
85 c2elrA_
not modelled
28.7
19
PDB header: transcriptionChain: A: PDB Molecule: zinc finger protein 406;PDBTitle: solution structure of the 15th c2h2 zinc finger of human2 zinc finger protein 406
86 c2aklA_
not modelled
27.5
28
PDB header: structural genomics, unknown functionChain: A: PDB Molecule: phna-like protein pa0128;PDBTitle: solution structure for phn-a like protein pa0128 from2 pseudomonas aeruginosa
87 c2jr7A_
not modelled
27.1
16
PDB header: metal binding proteinChain: A: PDB Molecule: dph3 homolog;PDBTitle: solution structure of human desr1
88 d2k4xa1
not modelled
27.1
21
Fold: Rubredoxin-likeSuperfamily: Zn-binding ribosomal proteinsFamily: Ribosomal protein S27a89 c2lo3A_
not modelled
26.2
23
PDB header: transcriptionChain: A: PDB Molecule: saga-associated factor 73;PDBTitle: solution structure of sgf73(59-102) zinc finger domain
90 c2zkr4_
not modelled
25.8
23
PDB header: ribosomal protein/rnaChain: 4: PDB Molecule: 60s ribosomal protein l44e;PDBTitle: structure of a mammalian ribosomal 60s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
91 c2f9yB_
not modelled
25.7
16
PDB header: ligaseChain: B: PDB Molecule: acetyl-coenzyme a carboxylase carboxyl transferase subunitPDBTitle: the crystal structure of the carboxyltransferase subunit of acc from2 escherichia coli
92 d2f9yb1
not modelled
25.7
16
Fold: ClpP/crotonaseSuperfamily: ClpP/crotonaseFamily: Biotin dependent carboxylase carboxyltransferase domain93 d1ubdc2
not modelled
24.2
40
Fold: beta-beta-alpha zinc fingersSuperfamily: beta-beta-alpha zinc fingersFamily: Classic zinc finger, C2H294 d1b8ta3
not modelled
23.8
17
Fold: Glucocorticoid receptor-like (DNA-binding domain)Superfamily: Glucocorticoid receptor-like (DNA-binding domain)Family: LIM domain95 c3lp5A_
not modelled
23.2
12
PDB header: hydrolaseChain: A: PDB Molecule: putative cell surface hydrolase;PDBTitle: the crystal structure of the putative cell surface hydrolase from2 lactobacillus plantarum wcfs1
96 d1pjaa_
not modelled
23.1
8
Fold: alpha/beta-HydrolasesSuperfamily: alpha/beta-HydrolasesFamily: Thioesterases97 c1pjaA_
not modelled
23.1
8
PDB header: hydrolaseChain: A: PDB Molecule: palmitoyl-protein thioesterase 2 precursor;PDBTitle: the crystal structure of palmitoyl protein thioesterase-2 reveals the2 basis for divergent substrate specificities of the two lysosomal3 thioesterases (ppt1 and ppt2)
98 d2b4jc1
not modelled
22.9
15
Fold: N-cbl likeSuperfamily: HIV integrase-binding domainFamily: HIV integrase-binding domain99 d1jvna1
not modelled
22.8
13
Fold: TIM beta/alpha-barrelSuperfamily: Ribulose-phoshate binding barrelFamily: Histidine biosynthesis enzymes100 d1uxoa_
not modelled
22.5
22
Fold: alpha/beta-HydrolasesSuperfamily: alpha/beta-HydrolasesFamily: YdeN-like101 c2gb5B_
not modelled
22.4
23
PDB header: hydrolaseChain: B: PDB Molecule: nadh pyrophosphatase;PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution
102 d2b0la1
not modelled
22.2
25
Fold: DNA/RNA-binding 3-helical bundleSuperfamily: "Winged helix" DNA-binding domainFamily: CodY HTH domain103 c1t39A_
not modelled
21.9
22
PDB header: transferase/dnaChain: A: PDB Molecule: methylated-dna--protein-cysteinePDBTitle: human o6-alkylguanine-dna alkyltransferase covalently2 crosslinked to dna
104 c2co8A_
not modelled
21.6
23
PDB header: metal binding proteinChain: A: PDB Molecule: nedd9 interacting protein with calponin homologyPDBTitle: solution structures of the lim domain of human nedd92 interacting protein with calponin homology and lim domains
105 d1ywsa1
not modelled
21.3
16
Fold: Rubredoxin-likeSuperfamily: CSL zinc fingerFamily: CSL zinc finger106 c2zyiB_
not modelled
21.2
28
PDB header: hydrolaseChain: B: PDB Molecule: lipase, putative;PDBTitle: a. fulgidus lipase with fatty acid fragment and calcium
107 d1xpaa2
not modelled
20.8
44
Fold: Glucocorticoid receptor-like (DNA-binding domain)Superfamily: Glucocorticoid receptor-like (DNA-binding domain)Family: DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain108 d1ydfa1
not modelled
20.6
11
Fold: HAD-likeSuperfamily: HAD-likeFamily: NagD-like109 d2yt9a1
not modelled
20.4
33
Fold: beta-beta-alpha zinc fingersSuperfamily: beta-beta-alpha zinc fingersFamily: Classic zinc finger, C2H2110 c2k42A_
not modelled
20.2
21
PDB header: signaling proteinChain: A: PDB Molecule: wiskott-aldrich syndrome protein;PDBTitle: solution structure of the gtpase binding domain of wasp in2 complex with espfu, an ehec effector
111 c1b8tA_
not modelled
20.1
16
PDB header: contractileChain: A: PDB Molecule: protein (crp1);PDBTitle: solution structure of the chicken crp1
112 d1wgea1
not modelled
20.1
16
Fold: Rubredoxin-likeSuperfamily: CSL zinc fingerFamily: CSL zinc finger
