PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: d1ynjd1

Fold library id	Fold	Superfamily	Family
d1ynjd1	beta and beta-prime subunits of DNA dependent RNA-polymerase	beta and beta-prime subunits of DNA dependent RNA-polymerase	RNA-polymerase beta-prime

Links to external resources
Added to library: Tue Mar 16 13:37:45 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K E V R K V R I A L A S P E K I R S W S Y G E V E K P E T I N Y R T L K P E R D G L F D E R I F G P I K D Y E C A C G K Y K R Q R F E G K V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S B
S
S S S
S S S T T
T T T S
S S S S S
S S
S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence C E R C G V E V T R S I V R R Y R M G H I E L A T P A A H I W F V K D V P S K I G T L L D L S A T E L E Q V L Y F N K Y I V L D P K G A V L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S
G G G G G T
S S
B
T S S S
S S T T T S
T T T T T S T G G G S S S S
S
B

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D G V P V E K R Q L L T D E E Y R E L R Y G K Q E T Y P L P A G V D A L V K D G E E V V K G Q E L A P G V V S R M D G V A L Y R F P R R V R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S B
S S
S T
T T
S S
S S
T T S B S S S S
B
S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence V D Y L R K E R A A L R I P L S A W V E K E A Y R P G E V L A E L S E P Y L F R A E E S G V V E L K D L A E G H L I Y L R Q E E E V V A R Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G B
S
B
T T
S S
S S
T T T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence F L P A G M T P L V V E G E I V E V G Q P L A E G K G L L R L P R H M T A K E V E A E E E G D S V H L T L F L E W T E P K D Y K V A P H M N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
T T
T T
T T
B
T T

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence V I V P E G A K V Q A G E K I V A A I D P E E E V I A E A E G V V H L H E P A S I L V V K A R V Y P F E D D V E V T T G D R V A P G D V L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
T T
S S T T T
S S
S
S S
B
T T
T T

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence D G G K V K S E I Y G R V E V D L V R N V V R V V E S Y D I D A R M G A E A I Q E L L K E L D L E K L E R E L L E E M K H P S R A R R A K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
S
T T T T
B
S S
T T T S S
S S T T T T

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence R K R L E V V R A F L D S G N R P E W M I L E A V P V L P P D L R P M V Q V D G G R F A T S D L N D L Y R R L I N R N N R L K K L L A Q G A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
T T T T B
S
G G G S
T T T
S T T T T T T S

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence P E I I I R N E K R M L Q E A V D A V I D N G R R G S P V T N P G S E R P L R S L T D I L S G K Q G R F R Q N L L G K R V D Y S G R S V I V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S S
S S
T T T T T S S S S S T T S
S S
B

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence V G P Q L K L H Q C G L P K R M A L E L F K P F L L K K M E E K A F A P N V K A A R R M L E R Q R D I K D E V W D A L E E V I H G K V V L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T B
B T S S
S S T T T S S S
T T

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence N R A P T L H R L G I Q A F Q P V L V E G Q S I Q L H P L V C E A F N A D F D G D Q M A V H V P L S S F A Q A E A R I Q M L S A H N L L S P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S G G G B
B S S S S
G G G T
T T T
B
S T B G G G
B
S

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence A S G E P L A K P S R D I I L G L Y Y I T Q V R K E K K G A G M A F A T P E E A L A A Y E R G E V A L N A P I V V A G R E T S V G R L K F V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S B S S
T T T S
S
S S
S S
S S
S S S S
T T
S S S

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence F A N P D E A L L A V A H G L L D L Q D V V T V R Y L G R R L E T S P G R I L F A R I V G E A V G D E K V A Q E L I Q M D V P Q E K N S L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S T T S
S S S
T T
T T S
S
T T S

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence D L V Y Q A F L R L G M E K T A R L L D A L K Y Y G F T L S T T S G I T I G I D D A V I P E E K Q R Y L E E A D R K L R Q I E Q A Y E M G F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
G G G S
T T T S

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence L T D R E R Y D Q V I Q L W T E T T E K V T Q A V F K N F E E N Y P F N P L Y V M A Q S G A R G N P Q Q I R Q L C G M R G L M Q K P S G E T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
T T
S S S S
S
B
B
T T S
B

. . . . . . . . . 1060 . . . . . . . . . 1070 . . . . . . . . . 1080 . . . . . . . . . 1090 . . . . . . . . . 1100 . . . . . . . . . 1110 . . . . . . . . . 1120

Sequence F E V P V R S S F R E G L T V L E Y F I S S H G A R K G G A D T A L R T A D S G Y L T R K L V D V A H E I V V R E A D C G T T N Y I S V P L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
B
T T S
T T T T T S S S T T
S S
S

. . . . . . . . . 1130 . . . . . . . . . 1140 . . . . . . . . . 1150 . . . . . . . . . 1160 . . . . . . . . . 1170 . . . . . . . . . 1180 . . . . . . . . . 1190

Sequence F Q M D E V T R T L R L R K R S D I E S G L Y G R V L A R E V E A L G R R L E E G R Y L S L E D V H F L I K A A E A G E V R E V P V R S P L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
T T
S S
T T
T T
B
T T S
S
T T

. . . . . . . . . 1200 . . . . . . . . . 1210 . . . . . . . . . 1220 . . . . . . . . . 1230 . . . . . . . .

Sequence T C Q T R Y G V C Q K C Y G Y D L S M A R P V S I G E A V G V V A A E S I G E P G T Q L T M R T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S S
S T T T
S S S S S
T T
G G G T T S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	E	V	R	K	V	R	I	A	L	A	S	P	E	K	I	R	S	W	S	Y	G	E	V	E	K	P	E	T	I	N	Y	R	T	L	K	P	E	R	D	G	L	F	D	E	R	I	F	G	P	I	K	D	Y	E	C	A	C	G	K	Y	K	R	Q	R	F	E	G	K	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					S	S	B			S						S	S	S					S	S	S	T	T		T	T	T	S			S	S	S	S	S		S	S						S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	C	E	R	C	G	V	E	V	T	R	S	I	V	R	R	Y	R	M	G	H	I	E	L	A	T	P	A	A	H	I	W	F	V	K	D	V	P	S	K	I	G	T	L	L	D	L	S	A	T	E	L	E	Q	V	L	Y	F	N	K	Y	I	V	L	D	P	K	G	A	V	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	S					S		G	G	G	G	G	T								S	S			B		T					S	S	S		S	S	T	T	T	S		T	T	T	T	T	S	T	G	G	G	S	S	S	S						S					B
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	G	V	P	V	E	K	R	Q	L	L	T	D	E	E	Y	R	E	L	R	Y	G	K	Q	E	T	Y	P	L	P	A	G	V	D	A	L	V	K	D	G	E	E	V	V	K	G	Q	E	L	A	P	G	V	V	S	R	M	D	G	V	A	L	Y	R	F	P	R	R	V	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S	B			S	S					S								T										T	T				S	S		S	S					T	T	S	B	S	S	S	S		B			S							S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	V	D	Y	L	R	K	E	R	A	A	L	R	I	P	L	S	A	W	V	E	K	E	A	Y	R	P	G	E	V	L	A	E	L	S	E	P	Y	L	F	R	A	E	E	S	G	V	V	E	L	K	D	L	A	E	G	H	L	I	Y	L	R	Q	E	E	E	V	V	A	R	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															G	G	G	B				S		B		T	T							S	S							S	S										T	T									T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	F	L	P	A	G	M	T	P	L	V	V	E	G	E	I	V	E	V	G	Q	P	L	A	E	G	K	G	L	L	R	L	P	R	H	M	T	A	K	E	V	E	A	E	E	E	G	D	S	V	H	L	T	L	F	L	E	W	T	E	P	K	D	Y	K	V	A	P	H	M	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S		T	T					T	T														T	T												T	T																	B			T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	V	I	V	P	E	G	A	K	V	Q	A	G	E	K	I	V	A	A	I	D	P	E	E	E	V	I	A	E	A	E	G	V	V	H	L	H	E	P	A	S	I	L	V	V	K	A	R	V	Y	P	F	E	D	D	V	E	V	T	T	G	D	R	V	A	P	G	D	V	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S		T	T					T	T							S	S	T	T	T						S	S									S													S	S		B				T	T					T	T
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	D	G	G	K	V	K	S	E	I	Y	G	R	V	E	V	D	L	V	R	N	V	V	R	V	V	E	S	Y	D	I	D	A	R	M	G	A	E	A	I	Q	E	L	L	K	E	L	D	L	E	K	L	E	R	E	L	L	E	E	M	K	H	P	S	R	A	R	R	A	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T	T					S								T	T	T	T													B		S										S													T	T	T	S	S		S	S	T	T	T	T
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	R	K	R	L	E	V	V	R	A	F	L	D	S	G	N	R	P	E	W	M	I	L	E	A	V	P	V	L	P	P	D	L	R	P	M	V	Q	V	D	G	G	R	F	A	T	S	D	L	N	D	L	Y	R	R	L	I	N	R	N	N	R	L	K	K	L	L	A	Q	G	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T	S			T	T	T	T	B		S							G	G	G	S						T	T	T						S															T	T	T	T	T	T	S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	P	E	I	I	I	R	N	E	K	R	M	L	Q	E	A	V	D	A	V	I	D	N	G	R	R	G	S	P	V	T	N	P	G	S	E	R	P	L	R	S	L	T	D	I	L	S	G	K	Q	G	R	F	R	Q	N	L	L	G	K	R	V	D	Y	S	G	R	S	V	I	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																						T	T	S	S	S						S	S								T	T	T	T	T	S	S	S	S	S	T	T	S									S	S					B
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	V	G	P	Q	L	K	L	H	Q	C	G	L	P	K	R	M	A	L	E	L	F	K	P	F	L	L	K	K	M	E	E	K	A	F	A	P	N	V	K	A	A	R	R	M	L	E	R	Q	R	D	I	K	D	E	V	W	D	A	L	E	E	V	I	H	G	K	V	V	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	S		T	T	B				B																			T	S	S		S	S							T	T	T	S	S	S															T	T
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	N	R	A	P	T	L	H	R	L	G	I	Q	A	F	Q	P	V	L	V	E	G	Q	S	I	Q	L	H	P	L	V	C	E	A	F	N	A	D	F	D	G	D	Q	M	A	V	H	V	P	L	S	S	F	A	Q	A	E	A	R	I	Q	M	L	S	A	H	N	L	L	S	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S			S	G	G	G					B				B	S	S	S	S					G	G	G					T			T	T	T		B								S											T	B	G	G	G			B		S
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	A	S	G	E	P	L	A	K	P	S	R	D	I	I	L	G	L	Y	Y	I	T	Q	V	R	K	E	K	K	G	A	G	M	A	F	A	T	P	E	E	A	L	A	A	Y	E	R	G	E	V	A	L	N	A	P	I	V	V	A	G	R	E	T	S	V	G	R	L	K	F	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	S	S	B	S	S				T	T									T	S						S		S	S				S	S		S	S											S	S	S	S		T	T			S	S	S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	F	A	N	P	D	E	A	L	L	A	V	A	H	G	L	L	D	L	Q	D	V	V	T	V	R	Y	L	G	R	R	L	E	T	S	P	G	R	I	L	F	A	R	I	V	G	E	A	V	G	D	E	K	V	A	Q	E	L	I	Q	M	D	V	P	Q	E	K	N	S	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S										T	T	S			S	S	S							T	T																			T	T	S									S		T	T	S
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	D	L	V	Y	Q	A	F	L	R	L	G	M	E	K	T	A	R	L	L	D	A	L	K	Y	Y	G	F	T	L	S	T	T	S	G	I	T	I	G	I	D	D	A	V	I	P	E	E	K	Q	R	Y	L	E	E	A	D	R	K	L	R	Q	I	E	Q	A	Y	E	M	G	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S																							T	T					G	G	G	S				T	T																						T	S
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	L	T	D	R	E	R	Y	D	Q	V	I	Q	L	W	T	E	T	T	E	K	V	T	Q	A	V	F	K	N	F	E	E	N	Y	P	F	N	P	L	Y	V	M	A	Q	S	G	A	R	G	N	P	Q	Q	I	R	Q	L	C	G	M	R	G	L	M	Q	K	P	S	G	E	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S																															S		T	T									S	S	S	S											S			B			B		T	T	S		B
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120
Sequence	F	E	V	P	V	R	S	S	F	R	E	G	L	T	V	L	E	Y	F	I	S	S	H	G	A	R	K	G	G	A	D	T	A	L	R	T	A	D	S	G	Y	L	T	R	K	L	V	D	V	A	H	E	I	V	V	R	E	A	D	C	G	T	T	N	Y	I	S	V	P	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S		B				T	T	S										T	T	T													T	T	S	S	S											T	T					S	S												S
	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190
Sequence	F	Q	M	D	E	V	T	R	T	L	R	L	R	K	R	S	D	I	E	S	G	L	Y	G	R	V	L	A	R	E	V	E	A	L	G	R	R	L	E	E	G	R	Y	L	S	L	E	D	V	H	F	L	I	K	A	A	E	A	G	E	V	R	E	V	P	V	R	S	P	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	T																T	T				S	S					T	T					T	T		B															T	T	S		S							T	T
	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.
Sequence	T	C	Q	T	R	Y	G	V	C	Q	K	C	Y	G	Y	D	L	S	M	A	R	P	V	S	I	G	E	A	V	G	V	V	A	A	E	S	I	G	E	P	G	T	Q	L	T	M	R	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T				S	S	S			S	T	T	T				S	S	S	S	S				T	T													G	G	G	T	T	S