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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1i6vD_

Fold library idPDB HeaderMoleculeTitle
c1i6vD_PDB header: transcriptionChain: D: PDB Molecule: dna-directed rna polymerase;PDBTitle: thermus aquaticus core rna polymerase-rifampicin complex


Added to library: Tue Mar 16 12:31:59 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KEVRKVRIALASPEKIRSWSYGEVEKPETEAKVCERCAVEVTRSIVRRYRMAHIELATPAAHIWFVKDVP
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Known secondary structure (DSSP)


S







STT








S
SSSSSSSS

SSSS









S


TTSSSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence SKIATLLDLSATELEQVLYFNKYIVLDPKAAVLDAVPVEKRQLLTDXXXXXXXXXXXXXXXXXXXXXXXX
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Known secondary structure (DSSP) TTS
SSSTTTSS



S



SSS


TT



T





B




S








SSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence XXXXXXXXXXXXIDARMGAEAIQELLKELDLEKLERELLEEMKHPSRARRAKARKRLEVVRAFLDSGNRP
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Known secondary structure (DSSP)
B














STTTTT
TT

SSSSSSS

S
 .........220.........230.........240.........250.........260.........270.........280
Sequence EWMILEAVPVLPPDATSDLNDLYRRLINRNNRLKKLLAQGAPEIIIRNEKRMLQEAVDAVIDNGRRGSPV
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Known secondary structure (DSSP)

S
SS




TT



TTTTTTTTTTTTTS


TTTTGGGTTTTTT

SS


S
 .........290.........300.........310.........320.........330.........340.........350
Sequence TNPGSERPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKRMALELFKPFLLKKM
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Known secondary structure (DSSP) S
SSS





TTTTTSSTT
TTTTTTS



TT



SSSSS

B
 .........360.........370.........380.........390.........400.........410.........420
Sequence EEKAFAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVEGQSIQLHPL
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Known secondary structure (DSSP) TS
SS
S
SSS


TTT


SS

SGGGT


BSSSS
TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence VCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKKG
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Known secondary structure (DSSP) T


SSS





STTTTTTSBTTTTTSS
SSSS
SS


TTTT







 .........500.........510.........520.........530.........540.........550.........560
Sequence AGMAFATPEEALAAYERGEVALNAPIVVAGRETSVGRLKFVFANPDEALLAVAHGLLDLQDTVTTRYLGR
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Known secondary structure (DSSP)



SS

TSTTSS

SS


SSS

STTSS




TTT
STTSTT
S
SS




SSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence RLETSPGRILFARIVGEAVGDEKVAQELIQMDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTL
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Known secondary structure (DSSP)


TTTTTT
TTTTTSSS

SS


SSTTS
 .........640.........650.........660.........670.........680.........690.........700
Sequence STTSGITIGIDDAVIPEEKQRYLEEADRKLRQIEQAYEMGFLTDRERYDQVIQLWTETTEKVTQAVFNNF
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Known secondary structure (DSSP) TT



GGGS


TTTTTTTSSSSSSSSS
G
 .........710.........720.........730.........740.........750.........760.........770
Sequence EENYPFNPLYVMAQSGARGNPQQIRQLCGMRGLMQKPSGETFEVPVRSSFREGLTVLEYFISSHGARKGG
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Known secondary structure (DSSP) GGS
SS

TTTTTTTSSS

SS






TTS


SS




BTTB
TT
TTTTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence ADTALRTADSGYLTRKLVDVAHEIVVREADCGTTNYISVPLFQMDEVTRTLRLRKRSDIESGLYGRVLAR
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Known secondary structure (DSSP) SGGGGTTTSSSTSSS



SS



S

S

STT




TTTT
SS
 .........850.........860.........870.........880.........890.........900.........910
Sequence EVEALGRRLEEGRYLSLEDVHFLIKAAEAGEVREVPVRSPLTCQTRYGVCQKCYGYDLSMARPVSIGEAV
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Known secondary structure (DSSP)
TT
TT
B

TTTS
S
GGG
S
SSS

SSSS
S
SSSSS


TT

T
 .........920.........930.........940.........950.........960.........970.........980
Sequence GVVAAESIGEPGTQLTMRTGTDITQGLPRVIELFEARRPKAKAVISEIDGVVRIEEGEDRLSVFVESEGF
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Known secondary structure (DSSP) TSGGGSS





TTSS



S

B


SSS






BTTB




SS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence SKEYKLPKDARLLVKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVDEIQKVYRAQGVKLHDKHIE
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Known secondary structure (DSSP)




SS





S

SSTTTTT
SS
BS
TTT



SST
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence IVVRQMLKYVEVTDPGDSRLLEGQVLEKWDVEALNERLIAVPVAWKPLLMGVTKSALSTKSWLSAASFQN
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Known secondary structure (DSSP) TT
S

SSS
SS

TTTT









STSSS
TTSS
 .........1130.........1140.........1150.........1160.........1170....
Sequence TTHVLTEAAIAGKKDELIGLKENVILGRLIPAGTGSDFVRFTQVVDQRTLKAIE
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Known secondary structure (DSSP) S



TT
STT


SSGGG
TTS






STT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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