Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP66817
DateThu Jan 5 12:10:20 GMT 2012
Unique Job ID60c8247a25ae4b3a

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2yvaB_
Top template information
PDB header:dna binding protein
Chain: B: PDB Molecule:dnaa initiator-associating protein diaa;
PDBTitle: crystal structure of escherichia coli diaa
Confidence and coverage
Confidence:100.0% Coverage: 98%
193 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MQERIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKILCCGNGTSAANAQHFA
Secondary structure 





SS confidence 



























































Disorder  ??

























































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   .........70.........80.........90.........100.........110.........120
Sequence  ASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQVRALGHAGDVLLAISTRG
Secondary structure 
























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Disorder 







?
??















































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   .........130.........140.........150.........160.........170.........180
Sequence  NSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRSARIQEMHMLTVN
Secondary structure 


















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   .........190......
Sequence  CLCDLIDNTLFPHQDD
Secondary structure 





SS confidence 















Disorder 









??????
Disorder confidence 















 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2yva chain B

3D model

Region: 1 - 193
Aligned: 193
Modelled: 193
Confidence: 100.0%
Identity: 100%
PDB header:dna binding protein
Chain: B: PDB Molecule:dnaa initiator-associating protein diaa;
PDBTitle: crystal structure of escherichia coli diaa

Phyre2

PDB 1x92 chain A

3D model

Region: 1 - 193
Aligned: 193
Modelled: 193
Confidence: 100.0%
Identity: 58%
Fold: SIS domain
Superfamily: SIS domain
Family: mono-SIS domain

Phyre2

PDB 1tk9 chain A

3D model

Region: 1 - 190
Aligned: 186
Modelled: 190
Confidence: 100.0%
Identity: 40%
Fold: SIS domain
Superfamily: SIS domain
Family: mono-SIS domain

Phyre2

PDB 2x3y chain A

3D model

Region: 3 - 192
Aligned: 187
Modelled: 190
Confidence: 100.0%
Identity: 40%
PDB header:isomerase
Chain: A: PDB Molecule:phosphoheptose isomerase;
PDBTitle: crystal structure of gmha from burkholderia pseudomallei

Phyre2

PDB 3trj chain C

3D model

Region: 3 - 189
Aligned: 180
Modelled: 187
Confidence: 100.0%
Identity: 46%
PDB header:isomerase
Chain: C: PDB Molecule:phosphoheptose isomerase;
PDBTitle: structure of a phosphoheptose isomerase from francisella tularensis

Phyre2

PDB 1x94 chain A

3D model

Region: 1 - 190
Aligned: 171
Modelled: 174
Confidence: 100.0%
Identity: 42%
Fold: SIS domain
Superfamily: SIS domain
Family: mono-SIS domain

Phyre2

PDB 3cvj chain B

3D model

Region: 2 - 190
Aligned: 185
Modelled: 187
Confidence: 99.9%
Identity: 17%
PDB header:isomerase
Chain: B: PDB Molecule:putative phosphoheptose isomerase;
PDBTitle: crystal structure of a putative phosphoheptose isomerase (bh3325) from2 bacillus halodurans c-125 at 2.00 a resolution

Phyre2

PDB 1nri chain A

3D model

Region: 2 - 190
Aligned: 186
Modelled: 188
Confidence: 99.9%
Identity: 16%
Fold: SIS domain
Superfamily: SIS domain
Family: mono-SIS domain

Phyre2

PDB 1nri chain A

3D model

Region: 2 - 190
Aligned: 186
Modelled: 188
Confidence: 99.9%
Identity: 16%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein hi0754;
PDBTitle: crystal structure of putative phosphosugar isomerase hi0754 from2 haemophilus influenzae

Phyre2

PDB 3fxa chain A

3D model

Region: 1 - 196
Aligned: 169
Modelled: 181
Confidence: 99.9%
Identity: 20%
PDB header:sugar binding protein
Chain: A: PDB Molecule:sis domain protein;
PDBTitle: crystal structure of a putative sugar-phosphate isomerase2 (lmof2365_0531) from listeria monocytogenes str. 4b f2365 at 1.60 a3 resolution

Phyre2

PDB 3etn chain D

3D model

Region: 1 - 196
Aligned: 168
Modelled: 174
Confidence: 99.9%
Identity: 18%
PDB header:isomerase
Chain: D: PDB Molecule:putative phosphosugar isomerase involved in capsule
PDBTitle: crystal structure of putative phosphosugar isomerase involved in2 capsule formation (yp_209877.1) from bacteroides fragilis nctc 93433 at 1.70 a resolution

Phyre2

PDB 2xhz chain C

3D model

Region: 3 - 189
Aligned: 160
Modelled: 172
Confidence: 99.8%
Identity: 14%
PDB header:isomerase
Chain: C: PDB Molecule:arabinose 5-phosphate isomerase;
PDBTitle: probing the active site of the sugar isomerase domain from e. coli2 arabinose-5-phosphate isomerase via x-ray crystallography

Phyre2

PDB 1m3s chain A

3D model

Region: 4 - 196
Aligned: 161
Modelled: 173
Confidence: 99.8%
Identity: 17%
Fold: SIS domain
Superfamily: SIS domain
Family: mono-SIS domain

Phyre2

PDB 3sho chain A

3D model

Region: 2 - 189
Aligned: 161
Modelled: 174
Confidence: 99.8%
Identity: 22%
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, rpir family;
PDBTitle: crystal structure of rpir transcription factor from sphaerobacter2 thermophilus (sugar isomerase domain)

Phyre2

PDB 1vim chain A

3D model

Region: 3 - 190
Aligned: 156
Modelled: 168
Confidence: 99.8%
Identity: 19%
Fold: SIS domain
Superfamily: SIS domain
Family: mono-SIS domain

Phyre2

PDB 1jeo chain A

3D model

Region: 7 - 190
Aligned: 152
Modelled: 164
Confidence: 99.7%
Identity: 16%
Fold: SIS domain
Superfamily: SIS domain
Family: mono-SIS domain

Phyre2

PDB 3hba chain A

3D model

Region: 8 - 187
Aligned: 157
Modelled: 163
Confidence: 99.7%
Identity: 17%
PDB header:isomerase
Chain: A: PDB Molecule:putative phosphosugar isomerase;
PDBTitle: crystal structure of a putative phosphosugar isomerase (sden_2705)2 from shewanella denitrificans os217 at 2.00 a resolution

Phyre2

PDB 2a3n chain A

3D model

Region: 10 - 185
Aligned: 150
Modelled: 161
Confidence: 99.7%
Identity: 15%
PDB header:sugar binding protein
Chain: A: PDB Molecule:putative glucosamine-fructose-6-phosphate aminotransferase;
PDBTitle: crystal structure of a putative glucosamine-fructose-6-phosphate2 aminotransferase (stm4540.s) from salmonella typhimurium lt2 at 1.353 a resolution

Phyre2

PDB 3fj1 chain A

3D model

Region: 1 - 188
Aligned: 162
Modelled: 173
Confidence: 99.7%
Identity: 19%
PDB header:isomerase
Chain: A: PDB Molecule:putative phosphosugar isomerase;
PDBTitle: crystal structure of putative phosphosugar isomerase (yp_167080.1)2 from silicibacter pomeroyi dss-3 at 1.75 a resolution

Phyre2

PDB 3knz chain A

3D model

Region: 7 - 196
Aligned: 164
Modelled: 169
Confidence: 99.7%
Identity: 15%
PDB header:sugar binding protein
Chain: A: PDB Molecule:putative sugar binding protein;
PDBTitle: crystal structure of putative sugar binding protein (np_459565.1) from2 salmonella typhimurium lt2 at 2.50 a resolution

Phyre2
1

c2yvaB_
2

d1x92a_
3

d1tk9a_
4

c2x3yA_
5

c3trjC_
6

d1x94a_
7

c3cvjB_
8

d1nria_
9

c1nriA_
10

c3fxaA_
11

c3etnD_
12

c2xhzC_
13

d1m3sa_
14

c3shoA_
15

d1vima_
16

d1jeoa_
17

c3hbaA_
18

c2a3nA_
19

c3fj1A_
20

c3knzA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2yvaB_



100.0 100 PDB header:dna binding protein
Chain: B: PDB Molecule:dnaa initiator-associating protein diaa;
PDBTitle: crystal structure of escherichia coli diaa
2d1x92a_



100.0 58 Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
3d1tk9a_



100.0 40 Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
4c2x3yA_



100.0 40 PDB header:isomerase
Chain: A: PDB Molecule:phosphoheptose isomerase;
PDBTitle: crystal structure of gmha from burkholderia pseudomallei
5c3trjC_



100.0 46 PDB header:isomerase
Chain: C: PDB Molecule:phosphoheptose isomerase;
PDBTitle: structure of a phosphoheptose isomerase from francisella tularensis
6d1x94a_



100.0 42 Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
7c3cvjB_



99.9 17 PDB header:isomerase
Chain: B: PDB Molecule:putative phosphoheptose isomerase;
PDBTitle: crystal structure of a putative phosphoheptose isomerase (bh3325) from2 bacillus halodurans c-125 at 2.00 a resolution
8d1nria_



99.9 16 Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
9c1nriA_



99.9 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein hi0754;
PDBTitle: crystal structure of putative phosphosugar isomerase hi0754 from2 haemophilus influenzae
10c3fxaA_



99.9 20 PDB header:sugar binding protein
Chain: A: PDB Molecule:sis domain protein;
PDBTitle: crystal structure of a putative sugar-phosphate isomerase2 (lmof2365_0531) from listeria monocytogenes str. 4b f2365 at 1.60 a3 resolution
11c3etnD_



99.9 18 PDB header:isomerase
Chain: D: PDB Molecule:putative phosphosugar isomerase involved in capsule
PDBTitle: crystal structure of putative phosphosugar isomerase involved in2 capsule formation (yp_209877.1) from bacteroides fragilis nctc 93433 at 1.70 a resolution
12c2xhzC_



99.8 14 PDB header:isomerase
Chain: C: PDB Molecule:arabinose 5-phosphate isomerase;
PDBTitle: probing the active site of the sugar isomerase domain from e. coli2 arabinose-5-phosphate isomerase via x-ray crystallography
13d1m3sa_



99.8 17 Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
14c3shoA_



99.8 22 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, rpir family;
PDBTitle: crystal structure of rpir transcription factor from sphaerobacter2 thermophilus (sugar isomerase domain)
15d1vima_



99.8 19 Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
16d1jeoa_



99.7 16 Fold:SIS domain
Superfamily:SIS domain
Family:mono-SIS domain
17c3hbaA_



99.7 17 PDB header:isomerase
Chain: A: PDB Molecule:putative phosphosugar isomerase;
PDBTitle: crystal structure of a putative phosphosugar isomerase (sden_2705)2 from shewanella denitrificans os217 at 2.00 a resolution
18c2a3nA_



99.7 15 PDB header:sugar binding protein
Chain: A: PDB Molecule:putative glucosamine-fructose-6-phosphate aminotransferase;
PDBTitle: crystal structure of a putative glucosamine-fructose-6-phosphate2 aminotransferase (stm4540.s) from salmonella typhimurium lt2 at 1.353 a resolution
19c3fj1A_



99.7 19 PDB header:isomerase
Chain: A: PDB Molecule:putative phosphosugar isomerase;
PDBTitle: crystal structure of putative phosphosugar isomerase (yp_167080.1)2 from silicibacter pomeroyi dss-3 at 1.75 a resolution
20c3knzA_



99.7 15 PDB header:sugar binding protein
Chain: A: PDB Molecule:putative sugar binding protein;
PDBTitle: crystal structure of putative sugar binding protein (np_459565.1) from2 salmonella typhimurium lt2 at 2.50 a resolution
21c2puwA_



not modelled 99.6 13 PDB header:transferase
Chain: A: PDB Molecule:isomerase domain of glutamine-fructose-6-phosphate
PDBTitle: the crystal structure of isomerase domain of glucosamine-6-phosphate2 synthase from candida albicans
22d1j5xa_



not modelled 99.6 19 Fold:SIS domain
Superfamily:SIS domain
Family:double-SIS domain
23c2amlB_



not modelled 99.6 19 PDB header:transferase
Chain: B: PDB Molecule:sis domain protein;
PDBTitle: crystal structure of lmo0035 protein (46906266) from listeria2 monocytogenes 4b f2365 at 1.50 a resolution
24c2zj3A_



not modelled 99.6 14 PDB header:transferase
Chain: A: PDB Molecule:glucosamine--fructose-6-phosphate
PDBTitle: isomerase domain of human glucose:fructose-6-phosphate2 amidotransferase
25c3g68A_



not modelled 99.6 14 PDB header:isomerase
Chain: A: PDB Molecule:putative phosphosugar isomerase;
PDBTitle: crystal structure of a putative phosphosugar isomerase (cd3275) from2 clostridium difficile 630 at 1.80 a resolution
26c3euaD_



not modelled 99.6 14 PDB header:isomerase
Chain: D: PDB Molecule:putative fructose-aminoacid-6-phosphate deglycase;
PDBTitle: crystal structure of a putative phosphosugar isomerase (bsu32610) from2 bacillus subtilis at 1.90 a resolution
27c3tbfA_



not modelled 99.6 12 PDB header:transferase
Chain: A: PDB Molecule:glucosamine--fructose-6-phosphate aminotransferase
PDBTitle: c-terminal domain of glucosamine-fructose-6-phosphate aminotransferase2 from francisella tularensis.
28d1moqa_



not modelled 99.6 13 Fold:SIS domain
Superfamily:SIS domain
Family:double-SIS domain
29d1x9ia_



not modelled 99.5 24 Fold:SIS domain
Superfamily:SIS domain
Family:double-SIS domain
30c3fkjA_



not modelled 99.5 16 PDB header:isomerase
Chain: A: PDB Molecule:putative phosphosugar isomerases;
PDBTitle: crystal structure of a putative phosphosugar isomerase (stm_0572) from2 salmonella typhimurium lt2 at 2.12 a resolution
31c2decA_



not modelled 99.4 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:325aa long hypothetical protein;
PDBTitle: crystal structure of the ph0510 protein from pyrococcus horikoshii ot3
32c3i0zB_



not modelled 99.4 22 PDB header:isomerase
Chain: B: PDB Molecule:putative tagatose-6-phosphate ketose/aldose isomerase;
PDBTitle: crystal structure of putative putative tagatose-6-phosphate2 ketose/aldose isomerase (np_344614.1) from streptococcus pneumoniae3 tigr4 at 1.70 a resolution
33c3odpA_



not modelled 99.4 17 PDB header:isomerase
Chain: A: PDB Molecule:putative tagatose-6-phosphate ketose/aldose isomerase;
PDBTitle: crystal structure of a putative tagatose-6-phosphate ketose/aldose2 isomerase (nt01cx_0292) from clostridium novyi nt at 2.35 a3 resolution
34c3c3jA_



not modelled 99.3 24 PDB header:isomerase
Chain: A: PDB Molecule:putative tagatose-6-phosphate ketose/aldose isomerase;
PDBTitle: crystal structure of tagatose-6-phosphate ketose/aldose isomerase from2 escherichia coli
35c1jxaA_



not modelled 99.3 12 PDB header:transferase
Chain: A: PDB Molecule:glucosamine 6-phosphate synthase;
PDBTitle: glucosamine 6-phosphate synthase with glucose 6-phosphate
36c2q8nB_



not modelled 98.4 14 PDB header:isomerase
Chain: B: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: crystal structure of glucose-6-phosphate isomerase (ec2 5.3.1.9) (tm1385) from thermotoga maritima at 1.82 a3 resolution
37c3ff1B_



not modelled 98.3 19 PDB header:isomerase
Chain: B: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: structure of glucose 6-phosphate isomerase from staphylococcus aureus
38d1c7qa_



not modelled 98.1 16 Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
39c3jx9B_



not modelled 98.0 13 PDB header:isomerase
Chain: B: PDB Molecule:putative phosphoheptose isomerase;
PDBTitle: crystal structure of putative phosphoheptose isomerase2 (yp_001815198.1) from exiguobacterium sp. 255-15 at 1.95 a resolution
40c1zzgB_



not modelled 97.9 16 PDB header:isomerase
Chain: B: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: crystal structure of hypothetical protein tt0462 from thermus2 thermophilus hb8
41c3ljkA_



not modelled 97.6 12 PDB header:isomerase
Chain: A: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: glucose-6-phosphate isomerase from francisella tularensis.
42d1gzda_



not modelled 97.4 15 Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
43c2wu8A_



not modelled 97.4 15 PDB header:isomerase
Chain: A: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: structural studies of phosphoglucose isomerase from2 mycobacterium tuberculosis h37rv
44d1u0fa_



not modelled 97.4 16 Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
45d1iata_



not modelled 97.4 14 Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
46d1hm5a_



not modelled 97.3 14 Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
47c3hjbA_



not modelled 97.3 15 PDB header:isomerase
Chain: A: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: 1.5 angstrom crystal structure of glucose-6-phosphate isomerase from2 vibrio cholerae.
48c1t10A_



not modelled 97.2 12 PDB header:isomerase
Chain: A: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: phosphoglucose isomerase from leishmania mexicana in complex with2 substrate d-fructose-6-phosphate
49c2o2cB_



not modelled 97.2 15 PDB header:isomerase
Chain: B: PDB Molecule:glucose-6-phosphate isomerase, glycosomal;
PDBTitle: crystal structure of phosphoglucose isomerase from t. brucei2 containing glucose-6-phosphate in the active site
50d1q50a_



not modelled 97.1 14 Fold:SIS domain
Superfamily:SIS domain
Family:Phosphoglucose isomerase, PGI
51c3nbuC_



not modelled 97.1 12 PDB header:isomerase
Chain: C: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: crystal structure of pgi glucosephosphate isomerase
52c3ujhB_



not modelled 96.8 13 PDB header:isomerase
Chain: B: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: crystal structure of substrate-bound glucose-6-phosphate isomerase2 from toxoplasma gondii
53c3bbnB_



not modelled 96.3 17 PDB header:ribosome
Chain: B: PDB Molecule:ribosomal protein s2;
PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome.
54c3pr3B_



not modelled 96.3 19 PDB header:isomerase
Chain: B: PDB Molecule:glucose-6-phosphate isomerase;
PDBTitle: crystal structure of plasmodium falciparum glucose-6-phosphate2 isomerase (pf14_0341) in complex with fructose-6-phosphate
55c2zkqb_



not modelled 96.2 20 PDB header:ribosomal protein/rna
Chain: B: PDB Molecule:rna expansion segment es3;
PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
56c3iz6A_



not modelled 96.1 15 PDB header:ribosome
Chain: A: PDB Molecule:40s ribosomal protein sa (s2p);
PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
57c3bchA_



not modelled 95.8 20 PDB header:cell adhesion, ribosomal protein
Chain: A: PDB Molecule:40s ribosomal protein sa;
PDBTitle: crystal structure of the human laminin receptor precursor
58d1y5ia2



not modelled 95.7 8 Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
59c1h0hA_



not modelled 95.7 11 PDB header:dehydrogenase
Chain: A: PDB Molecule:formate dehydrogenase (large subunit);
PDBTitle: tungsten containing formate dehydrogenase from2 desulfovibrio gigas
60d2jioa2



not modelled 95.7 13 Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
61c3izbA_



not modelled 95.7 15 PDB header:ribosome
Chain: A: PDB Molecule:40s ribosomal protein rps0 (s2p);
PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
62c1s1hB_



not modelled 95.6 14 PDB header:ribosome
Chain: B: PDB Molecule:40s ribosomal protein s0-a;
PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i.
63c1y5iA_



not modelled 95.5 8 PDB header:oxidoreductase
Chain: A: PDB Molecule:respiratory nitrate reductase 1 alpha chain;
PDBTitle: the crystal structure of the narghi mutant nari-k86a
64c2v45A_



not modelled 95.5 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:periplasmic nitrate reductase;
PDBTitle: a new catalytic mechanism of periplasmic nitrate reductase2 from desulfovibrio desulfuricans atcc 27774 from3 crystallographic and epr data and based on detailed4 analysis of the sixth ligand
65d1ogya2



not modelled 95.4 10 Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
66c2xznB_



not modelled 95.4 19 PDB header:ribosome
Chain: B: PDB Molecule:rps0e;
PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
67d1h0ha2



not modelled 95.3 12 Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
68c2ivfA_



not modelled 95.3 11 PDB header:oxidoreductase
Chain: A: PDB Molecule:ethylbenzene dehydrogenase alpha-subunit;
PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum
69d2uubb1



not modelled 95.2 23 Fold:Flavodoxin-like
Superfamily:Ribosomal protein S2
Family:Ribosomal protein S2
70d2iv2x2



not modelled 95.2 9 Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
71c2e7zA_



not modelled 95.1 13 PDB header:lyase
Chain: A: PDB Molecule:acetylene hydratase ahy;
PDBTitle: acetylene hydratase from pelobacter acetylenicus
72c1kqgA_



not modelled 95.0 9 PDB header:oxidoreductase
Chain: A: PDB Molecule:formate dehydrogenase, nitrate-inducible, major subunit;
PDBTitle: formate dehydrogenase n from e. coli
73d2gy9b1



not modelled 94.9 20 Fold:Flavodoxin-like
Superfamily:Ribosomal protein S2
Family:Ribosomal protein S2
74c2nyaF_



not modelled 94.8 9 PDB header:oxidoreductase
Chain: F: PDB Molecule:periplasmic nitrate reductase;
PDBTitle: crystal structure of the periplasmic nitrate reductase2 (nap) from escherichia coli
75d1kqfa2



not modelled 94.7 9 Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
76c1ogyA_



not modelled 94.7 10 PDB header:oxidoreductase
Chain: A: PDB Molecule:periplasmic nitrate reductase;
PDBTitle: crystal structure of the heterodimeric nitrate reductase2 from rhodobacter sphaeroides
77c2vpyE_



not modelled 94.6 11 PDB header:oxidoreductase
Chain: E: PDB Molecule:thiosulfate reductase;
PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp)
78c2iv2X_



not modelled 94.4 9 PDB header:oxidoreductase
Chain: X: PDB Molecule:formate dehydrogenase h;
PDBTitle: reinterpretation of reduced form of formate dehydrogenase h2 from e. coli
79d1vi6a_



not modelled 93.8 21 Fold:Flavodoxin-like
Superfamily:Ribosomal protein S2
Family:Ribosomal protein S2
80d1vlfm2



not modelled 92.8 5 Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
81c1tmoA_



not modelled 92.1 9 PDB header:oxidoreductase
Chain: A: PDB Molecule:trimethylamine n-oxide reductase;
PDBTitle: trimethylamine n-oxide reductase from shewanella massilia
82d1dmra2



not modelled 92.1 11 Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
83d1p3da1



not modelled 91.5 11 Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
84c1vlfQ_



not modelled 91.5 5 PDB header:oxidoreductase
Chain: Q: PDB Molecule:pyrogallol hydroxytransferase large subunit;
PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici complexed3 with inhibitor 1,2,4,5-tetrahydroxy-benzene
85c3jwpA_



not modelled 90.8 13 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein sir2 homologue;
PDBTitle: crystal structure of plasmodium falciparum sir2a (pf13_0152) in2 complex with amp
86c3uagA_



not modelled 90.3 16 PDB header:ligase
Chain: A: PDB Molecule:protein (udp-n-acetylmuramoyl-l-alanine:d-
PDBTitle: udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase
87c2axqA_



not modelled 90.2 17 PDB header:oxidoreductase
Chain: A: PDB Molecule:saccharopine dehydrogenase;
PDBTitle: apo histidine-tagged saccharopine dehydrogenase (l-glu2 forming) from saccharomyces cerevisiae
88d1tmoa2



not modelled 89.7 9 Fold:Formate dehydrogenase/DMSO reductase, domains 1-3
Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3
Family:Formate dehydrogenase/DMSO reductase, domains 1-3
89c1h5nC_



not modelled 89.5 9 PDB header:oxidoreductase
Chain: C: PDB Molecule:dmso reductase;
PDBTitle: dmso reductase modified by the presence of dms and air
90d2ax3a2



not modelled 89.0 12 Fold:YjeF N-terminal domain-like
Superfamily:YjeF N-terminal domain-like
Family:YjeF N-terminal domain-like
91d1j6ua1



not modelled 88.6 17 Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
92c3lk7A_



not modelled 88.5 16 PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine--d-glutamate ligase;
PDBTitle: the crystal structure of udp-n-acetylmuramoylalanine-d-2 glutamate (murd) ligase from streptococcus agalactiae to3 1.5a
93d2jfga1



not modelled 88.5 14 Fold:MurCD N-terminal domain
Superfamily:MurCD N-terminal domain
Family:MurCD N-terminal domain
94c2q1yB_



not modelled 88.2 22 PDB header:cell cycle, signaling protein
Chain: B: PDB Molecule:cell division protein ftsz;
PDBTitle: crystal structure of cell division protein ftsz from mycobacterium2 tuberculosis in complex with gtp-gamma-s
95d1ma3a_



not modelled 88.0 7 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
96c1j6uA_



not modelled 86.9 19 PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate-alanine ligase murc;
PDBTitle: crystal structure of udp-n-acetylmuramate-alanine ligase2 murc (tm0231) from thermotoga maritima at 2.3 a resolution
97c2f00A_



not modelled 86.8 18 PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase;
PDBTitle: escherichia coli murc
98d2b4ya1



not modelled 86.7 9 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
99c1w59B_



not modelled 86.2 19 PDB header:cell division
Chain: B: PDB Molecule:cell division protein ftsz homolog 1;
PDBTitle: ftsz dimer, empty (m. jannaschii)
100c3k35D_



not modelled 85.9 12 PDB header:hydrolase
Chain: D: PDB Molecule:nad-dependent deacetylase sirtuin-6;
PDBTitle: crystal structure of human sirt6
101d1m2ka_



not modelled 85.8 11 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
102d1yc5a1



not modelled 85.7 5 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
103c3d3jA_



not modelled 85.3 11 PDB header:protein binding
Chain: A: PDB Molecule:enhancer of mrna-decapping protein 3;
PDBTitle: crystal structure of human edc3p
104c3pkiF_



not modelled 85.0 12 PDB header:hydrolase
Chain: F: PDB Molecule:nad-dependent deacetylase sirtuin-6;
PDBTitle: human sirt6 crystal structure in complex with adp ribose
105c2ax3A_



not modelled 84.2 12 PDB header:transferase
Chain: A: PDB Molecule:hypothetical protein tm0922;
PDBTitle: crystal structure of a putative carbohydrate kinase (tm0922) from2 thermotoga maritima msb8 at 2.25 a resolution
106c2rhoB_



not modelled 83.2 22 PDB header:cell cycle
Chain: B: PDB Molecule:cell division protein ftsz;
PDBTitle: synthetic gene encoded bacillus subtilis ftsz ncs dimer with2 bound gdp and gtp-gamma-s
107c1ir6A_



not modelled 82.9 14 PDB header:hydrolase
Chain: A: PDB Molecule:exonuclease recj;
PDBTitle: crystal structure of exonuclease recj bound to manganese
108d1ir6a_



not modelled 82.9 14 Fold:DHH phosphoesterases
Superfamily:DHH phosphoesterases
Family:Exonuclease RecJ
109d1pjqa1



not modelled 81.5 21 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Siroheme synthase N-terminal domain-like
110d1rq2a1



not modelled 80.4 25 Fold:Tubulin nucleotide-binding domain-like
Superfamily:Tubulin nucleotide-binding domain-like
Family:Tubulin, GTPase domain
111c1e5lA_



not modelled 78.5 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:saccharopine reductase;
PDBTitle: apo saccharopine reductase from magnaporthe grisea
112d1s5pa_



not modelled 78.4 21 Fold:DHS-like NAD/FAD-binding domain
Superfamily:DHS-like NAD/FAD-binding domain
Family:Sir2 family of transcriptional regulators
113c2dg2D_



not modelled 77.2 11 PDB header:protein binding
Chain: D: PDB Molecule:apolipoprotein a-i binding protein;
PDBTitle: crystal structure of mouse apolipoprotein a-i binding2 protein
114c3eagA_



not modelled 77.2 23 PDB header:ligase
Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso-
PDBTitle: the crystal structure of udp-n-acetylmuramate:l-alanyl-gamma-d-2 glutamyl-meso-diaminopimelate ligase (mpl) from neisseria3 meningitides
115c3d3kD_



not modelled 77.1 12 PDB header:protein binding
Chain: D: PDB Molecule:enhancer of mrna-decapping protein 3;
PDBTitle: crystal structure of human edc3p
116c2vawA_



not modelled 76.9 22 PDB header:cell cycle
Chain: A: PDB Molecule:cell division protein ftsz;
PDBTitle: ftsz pseudomonas aeruginosa gdp
117c3q2oB_



not modelled 76.8 21 PDB header:lyase
Chain: B: PDB Molecule:phosphoribosylaminoimidazole carboxylase, atpase subunit;
PDBTitle: crystal structure of purk: n5-carboxyaminoimidazole ribonucleotide2 synthetase
118c3ijpA_



not modelled 76.7 14 PDB header:oxidoreductase
Chain: A: PDB Molecule:dihydrodipicolinate reductase;
PDBTitle: crystal structure of dihydrodipicolinate reductase from2 bartonella henselae at 2.0a resolution
119d1ibja_



not modelled 74.2 17 Fold:PLP-dependent transferase-like
Superfamily:PLP-dependent transferases
Family:Cystathionine synthase-like
120d1kjqa2



not modelled 74.2 8 Fold:PreATP-grasp domain
Superfamily:PreATP-grasp domain
Family:BC N-terminal domain-like

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0