PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c2xznB_

Fold library id	PDB Header	Molecule	Title
c2xznB_	PDB header: ribosome	Chain: B: PDB Molecule: rps0e;	PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2

Links to external resources
Added to library: Sat Jan 22 08:50:41 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M A T Q R K Q D D I K R L L A S N C H Q A T I N L N N Q M K R Y I S H K G V N G I H Y I N I E E T W Q K I K L A A R V I A A V Q H P E D V M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
S
G G G T T T
S S S
S S G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V V C S R I Y G Q R A A I K F A G Y T H C K S T S S S R W T P G T L T N Y Q T L K Y E E P R V L I V T D P R S D F Q A I K E A S Y V N I P V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T
B
S S
T T T T T
T T
S S
S S
T T T T T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . .

Sequence I A L C D S D S P L A Y V D V V I P C N N R S T E S I S M I Y W M I A R E V K I L R G E L S K D E E W E V M V D L F Y H K T L P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
T T
S
S S T S S
S S S
S
G G G G S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	A	T	Q	R	K	Q	D	D	I	K	R	L	L	A	S	N	C	H	Q	A	T	I	N	L	N	N	Q	M	K	R	Y	I	S	H	K	G	V	N	G	I	H	Y	I	N	I	E	E	T	W	Q	K	I	K	L	A	A	R	V	I	A	A	V	Q	H	P	E	D	V	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T	T	T	T				S				G	G	G	T	T	T						S	S	S																								S	S	G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	V	C	S	R	I	Y	G	Q	R	A	A	I	K	F	A	G	Y	T	H	C	K	S	T	S	S	S	R	W	T	P	G	T	L	T	N	Y	Q	T	L	K	Y	E	E	P	R	V	L	I	V	T	D	P	R	S	D	F	Q	A	I	K	E	A	S	Y	V	N	I	P	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S															T		B					S	S			T	T	T	T	T		T	T		S	S					S					S		T	T	T	T								T	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
Sequence	I	A	L	C	D	S	D	S	P	L	A	Y	V	D	V	V	I	P	C	N	N	R	S	T	E	S	I	S	M	I	Y	W	M	I	A	R	E	V	K	I	L	R	G	E	L	S	K	D	E	E	W	E	V	M	V	D	L	F	Y	H	K	T	L	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S	S			T	T							S			S	S																				T	S	S		S	S	S				S		G	G	G	G	S