Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2f00A_

Fold library idPDB HeaderMoleculeTitle
c2f00A_PDB header: ligaseChain: A: PDB Molecule: udp-n-acetylmuramate--l-alanine ligase;PDBTitle: escherichia coli murc


Added to library: Tue Mar 16 13:03:32 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence XNTQQLAKLRSIVPEXRRVRHIHFVGIGGAGXGGIAEVLANEGYQISGSDLAPNPVTQQLXNLGATIYFN
Predicted secondary structure























SS confidence





































































Known secondary structure (DSSP)

TTTS


TT

TTTSTTTT

SS

TT
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence HRPENVRDASVVVVSSAISADNPEIVAAHEARIPVIRRAEXLAELXRFRHGIAIAGTHGKTTTTAXVSSI
Predicted secondary structure



























SS confidence





































































Known secondary structure (DSSP)

GGGGTT
S
TT

TT
TT

TTSSSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence YAEAGLDPTFVNGGLVKAAGVHARLGHGRYLIAEADESDASFLHLQPXVAIVTNIEADHXDTYQGDFENL
Predicted secondary structure









































SS confidence





































































Known secondary structure (DSSP) TT


TTTT

SSS


TTSGGGG


S



S
SGGGTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence KQTFINFLHNLPFYGRAVXCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLRQDKE
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP) TTS
TT
TTSGGG

SSSTT
STT
TTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence PXRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEFPLEPVNGKSGTAXLVD
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP)
SS
ST

T


BTTSSSSSSSS
SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence DYGHHPTEVDATIKAARAGWPDKNLVXLFQPHRFTRTRDLYDDFANVLTQVDTLLXLEVYPAGEAPIPGA
Predicted secondary structure

























SS confidence





































































Known secondary structure (DSSP)


STT

SS

B
TTTTTSS


B
SSS


TTS
 .........430.........440.........450.........460.........470......
Sequence DSRSLCRTDPILVPDPARVAEXLAPVLTGNDLILVQGAGNIGKIARSLAEIKLKPQ
Predicted secondary structure



















SS confidence























































Known secondary structure (DSSP) STT





SS

GGG

S
STTTTT



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D