PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3bbnB_

Fold library id	PDB Header	Molecule	Title
c3bbnB_	PDB header: ribosome	Chain: B: PDB Molecule: ribosomal protein s2;	PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome.

Links to external resources
Added to library: Tue Mar 16 12:04:33 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Y W N I N L E E M M E A G V H F G H G T R K W N P R M S P Y I S A K C K G I H I I N L T R T A R F L S E A C D L V F D A S S R G K Q F L I V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S T S S S S
S S
G G G G G G T T
T S T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G T K N K A A D S V A R A A I R A R C H Y V N K K W L G G M L T N W S T T E T R L H K F R D L R M E Q T A G R L A R L P K R D A A V V K R Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
S S
S
S S S
S T T S T T T T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L S H L Q T Y L G G I K Y M T G L P D I V I I V D Q Q E E Y T A L R E C I T L G I P T I C L I D T N C N P D L A D I S I P A N D D A I A S I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S T T S T T S
S
S S
T T T T T T T
S S S
S S
S
S S S

. . . . . . . . . 220 . . . . . . . . . 230 .

Sequence R L I L T K L V F A I C E G R S S Y I R N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Y	W	N	I	N	L	E	E	M	M	E	A	G	V	H	F	G	H	G	T	R	K	W	N	P	R	M	S	P	Y	I	S	A	K	C	K	G	I	H	I	I	N	L	T	R	T	A	R	F	L	S	E	A	C	D	L	V	F	D	A	S	S	R	G	K	Q	F	L	I	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S		S	S						T	S	S	S	S				S	S				G	G	G	G	G	G						T	T													T							S					T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	T	K	N	K	A	A	D	S	V	A	R	A	A	I	R	A	R	C	H	Y	V	N	K	K	W	L	G	G	M	L	T	N	W	S	T	T	E	T	R	L	H	K	F	R	D	L	R	M	E	Q	T	A	G	R	L	A	R	L	P	K	R	D	A	A	V	V	K	R	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	T												T						S	S			S		S	S	S																		S	T	T	S	T	T	T	T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	S	H	L	Q	T	Y	L	G	G	I	K	Y	M	T	G	L	P	D	I	V	I	I	V	D	Q	Q	E	E	Y	T	A	L	R	E	C	I	T	L	G	I	P	T	I	C	L	I	D	T	N	C	N	P	D	L	A	D	I	S	I	P	A	N	D	D	A	I	A	S	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	S	T	T	S	T	T	S			S			S					S		T	T	T	T									T	T	T									S	S	S			S	S		S							S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Sequence	R	L	I	L	T	K	L	V	F	A	I	C	E	G	R	S	S	Y	I	R	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	S	S