Fold library entry viewer: c2nyaF_

Added to library: Tue Mar 16 12:06:52 2010
Links to external resources

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	A	I	K	W	D	K	A	P	C	R	F	C	G	T	G	C	G	V	L	V	G	T	Q	Q	G	R	V	V	A	C	Q	G	D	P	D	A	P	V	N	R	G	L	N	C	I	K	G	Y	F	L	P	K	I	M	Y	G	K	D	R	L	T	Q	P	L	L	R	M	K	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	S	S	T	T										T	T									T	T		T	T	T	T	T								T	G	G	G	T	T	S		T	T				S						S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	K	Y	D	K	E	G	E	F	T	P	I	T	W	D	Q	A	F	D	V	M	E	E	K	F	K	T	A	L	K	E	K	G	P	E	S	I	G	M	F	G	S	G	Q	W	T	I	W	E	G	Y	A	A	S	K	L	F	K	A	G	F	R	S	N	N	I	D	P	N	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S																														T		G	G	G							T	T	S															T	S								G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	H	C	M	A	S	A	V	V	G	F	M	R	T	F	G	M	D	E	P	M	G	C	Y	D	D	I	E	Q	A	D	A	F	V	L	W	G	A	N	M	A	E	M	H	P	I	L	W	S	R	I	T	N	R	R	L	S	N	Q	N	V	T	V	A	V	L	S	T	Y	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	T	T												S	S		S		S			G	G	G	G	G	G		S						S							S													T		T	T								S	S	B
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	H	R	S	F	E	L	A	D	N	G	I	I	F	T	P	Q	S	D	L	V	I	L	N	Y	I	A	N	Y	I	I	Q	N	N	A	I	N	Q	D	F	F	S	K	H	V	N	L	R	K	G	A	T	D	I	G	Y	G	L	R	P	T	H	P	L	E	K	A	A	K	N	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	G	G	G		S							T	T	T															T	T																							S			T	T	S					T		S	S	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	G	S	D	A	S	E	P	M	S	F	E	D	Y	K	A	F	V	A	E	Y	T	L	E	K	T	A	E	M	T	G	V	P	K	D	Q	L	E	Q	L	A	Q	L	Y	A	D	P	N	K	K	V	I	S	Y	W	T	M	G	F	N	Q	H	T	R	G	V	W	A	N	N	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T																		T	S																										T	T								S					S	S	T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	V	Y	N	L	H	L	L	T	G	K	I	S	Q	P	G	C	G	P	F	S	L	T	G	Q	P	S	A	C	G	T	A	R	E	V	G	T	F	A	H	R	L	P	A	D	M	V	V	T	N	E	K	H	R	D	I	C	E	K	K	W	N	I	P	S	G	T	I	P	A	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T			S	B	T	T	B								S	T	T	T	T	T	T					T		S	T	T	B		S	T	T		B	T	T													T			T	T		S			S
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	I	G	L	H	A	V	A	Q	D	R	A	L	K	D	G	K	L	N	V	Y	W	T	M	C	T	N	N	M	Q	A	G	P	N	I	N	E	E	R	M	P	G	W	R	D	P	R	N	F	I	I	V	S	D	P	Y	P	T	V	S	A	L	A	A	D	L	I	L	P	T	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T									S							S	S		T	T	T	T						T		T	T								S	S							T	S	S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	M	W	V	E	K	E	G	A	Y	G	N	A	E	R	R	T	Q	F	W	R	Q	Q	V	Q	A	P	G	E	A	K	S	D	L	W	Q	L	V	Q	F	S	R	R	F	K	T	E	E	V	W	P	E	D	L	L	A	K	K	P	E	L	R	G	K	T	L	Y	E	V	L	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G	S							T	T	S							B		S			S	T	T													T	T		B	G	G	G	T	S						T	T		G	G	G	T	T		B						T
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	A	T	P	E	V	S	K	F	P	V	S	E	L	A	E	D	Q	L	N	D	E	S	R	E	L	G	F	Y	L	Q	K	G	L	F	E	E	Y	A	W	F	G	R	G	H	G	H	D	L	A	P	F	D	D	Y	H	K	A	R	G	L	R	W	P	V	V	N	G	K	E	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	T	T	T	T		S	B	G	G	G	S		T	T		B								T	B												T	T	T	T	T	T	T										T	T	S	S				S			B	T	T	B
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	Q	W	R	Y	S	E	G	N	D	P	Y	V	K	A	G	E	G	Y	K	F	Y	G	K	P	D	G	K	A	V	I	F	A	L	P	F	E	P	A	A	E	A	P	D	E	E	Y	D	L	W	L	S	T	G	R	V	L	E	H	W	H	T	G	S	M	T	R	R	V	P	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S		S	B	T	T	T		T	T	S		T	T		S	B			T	T	S	T	T	S													S	S				S	S	S										T	T			T	T		T	T	G	G	G	S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	L	H	R	A	F	P	E	A	V	L	F	I	H	P	L	D	A	K	A	R	D	L	R	R	G	D	K	V	K	V	V	S	R	R	G	E	V	I	S	I	V	E	T	R	G	R	N	R	P	P	Q	G	L	V	Y	M	P	F	F	D	A	A	Q	L	V	N	K	L	T	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	S		S												T	T	T			T	T								S	S									S	S	S	S		B			T	T						S			T	T	S		G	G	G	T
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.
Sequence	D	A	T	D	P	L	S	K	E	T	D	F	K	K	C	A	V	K	L	E	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			B		T	T	T			B		T	T

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PDB structure

FASTA sequence

Hidden Markov model

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