PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c2dg2D_

Fold library id	PDB Header	Molecule	Title
c2dg2D_	PDB header: protein binding	Chain: D: PDB Molecule: apolipoprotein a-i binding protein;	PDBTitle: crystal structure of mouse apolipoprotein a-i binding2 protein

Links to external resources
Added to library: Tue Mar 16 12:17:42 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A V K Y L S Q E E A Q A V D Q E L F N E Y Q F S V D Q L X E L A G L S C A T A I A K A Y P P T S X S K S P P T V L V I C G P G N N G G D G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
S S
S
G G G S S S S S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V C A R H L K L F G Y Q P T I Y Y P K R P N K P L F T G L V T Q C Q K X D I P F L G E X P P E P X X V D E L Y E L V V D A I F G F S F K G D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
S T T
B
S S
S S
S S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V R E P F H S I L S V L S G L T V P I A S I D I P S G W D V E K G N P S G I Q P D L L I S L T A P K K S A T H F T G R Y H Y L G G R F V P P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
S S
-
T T S B T T T B
T T S
S S S
B G G G G S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . .

Sequence A L E K K Y Q L N L P S Y P D T E C V Y R L Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	V	K	Y	L	S	Q	E	E	A	Q	A	V	D	Q	E	L	F	N	E	Y	Q	F	S	V	D	Q	L	X	E	L	A	G	L	S	C	A	T	A	I	A	K	A	Y	P	P	T	S	X	S	K	S	P	P	T	V	L	V	I	C	G	P	G	N	N	G	G	D	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					B															S	S																							S		G	G	G	S	S	S	S	S									S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	C	A	R	H	L	K	L	F	G	Y	Q	P	T	I	Y	Y	P	K	R	P	N	K	P	L	F	T	G	L	V	T	Q	C	Q	K	X	D	I	P	F	L	G	E	X	P	P	E	P	X	X	V	D	E	L	Y	E	L	V	V	D	A	I	F	G	F	S	F	K	G	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T								S	S				S													T	T			B		S	S			S	S									S						S			T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	R	E	P	F	H	S	I	L	S	V	L	S	G	L	T	V	P	I	A	S	I	D	I	P	S	G	W	D	V	E	K	G	N	P	S	G	I	Q	P	D	L	L	I	S	L	T	A	P	K	K	S	A	T	H	F	T	G	R	Y	H	Y	L	G	G	R	F	V	P	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T									T	T		S	S							-		T	T	S	B	T	T	T	B		T	T	S				S						S	S		B	G	G	G	G	S			S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Sequence	A	L	E	K	K	Y	Q	L	N	L	P	S	Y	P	D	T	E	C	V	Y	R	L	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T								T	T		S