PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c1s1hB_

Fold library id	PDB Header	Molecule	Title
c1s1hB_	PDB header: ribosome	Chain: B: PDB Molecule: 40s ribosomal protein s0-a;	PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i.

Links to external resources
Added to library: Tue Mar 16 12:45:55 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A Q L L L A A N T H L G A R N V Q V H Q E P Y V F N A R P D G V H V I N V G K T W E K L V L A A R I I A A I P N P E D V V A I S S R T F G Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S G G G G T S S
S S
G G G G G G
G G G
T T T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R A V L K F A A H T G A T P I A G R F T P G S F T N Y I T R S F K E P R L V I V T D P R S D A Q A I K E A S Y V N I P V I A L T D L D S P S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S
S
T T T T T T T T T S
S
S S
T T T T T
T T S
G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . .

Sequence E F V D V A I P C N N R G K H S I G L I W Y L L A R E V L R L R G A L V D R T Q P W S I M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G
S S
S S
T
G G G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	Q	L	L	L	A	A	N	T	H	L	G	A	R	N	V	Q	V	H	Q	E	P	Y	V	F	N	A	R	P	D	G	V	H	V	I	N	V	G	K	T	W	E	K	L	V	L	A	A	R	I	I	A	A	I	P	N	P	E	D	V	V	A	I	S	S	R	T	F	G	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	G	G	G	G	T	S	S			S	S			G	G	G	G	G	G						G	G	G																							T	T	T	T									S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	A	V	L	K	F	A	A	H	T	G	A	T	P	I	A	G	R	F	T	P	G	S	F	T	N	Y	I	T	R	S	F	K	E	P	R	L	V	I	V	T	D	P	R	S	D	A	Q	A	I	K	E	A	S	Y	V	N	I	P	V	I	A	L	T	D	L	D	S	P	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	S	S						S				T	T	T	T	T	T	T	T	T	S		S				S					S		T	T	T	T											T									T	T	S		G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Sequence	E	F	V	D	V	A	I	P	C	N	N	R	G	K	H	S	I	G	L	I	W	Y	L	L	A	R	E	V	L	R	L	R	G	A	L	V	D	R	T	Q	P	W	S	I	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G		S					S		S	S																					T							G	G	G	G	G