Phyre 2 alignment of P66817 with c3g13B_

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Job Description | P66817
Confidence | 20.52% | Date | Thu Jan 5 12:10:20 GMT 2012
Rank | 483 | Aligned Residues | 48
% Identity | 10% | Template | c3g13B_
PDB info | PDB header:recombination | Chain: B: PDB Molecule:putative conjugative transposon recombinase; | PDBTitle: crystal structure of putative conjugative transposon recombinase from2 clostridium difficile
Resolution | 2.00 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 98 | . | 100 | . | . | . | . | . | . | . | . | . | 110 |  |  | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . |  |  |  | . | . | . | . | . | . | . | . | 140 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | V | Y | A | K | Q | V | R | A | L | G | H | A | G | . | . | D | V | L | L | A | I | S | T | R | G | N | S | R | D | I | V | K | A | V | E | A | . | . | . | A | V | T | R | D | M | T | I | V | A | L | T | G | Y
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | E | D | F | Q | R | X | I | N | D | C | X | N | G | E | I | D | X | V | F | T | K | S | I | S | R | F | A | R | N | T | L | D | T | L | K | Y | V | R | X | L | K | E | R | N | I | A | V | Y | F | E | D | E | K
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | T | T |  |  | S |  |  |  |  | S |  | G | G | G | S | S | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  | T | T | T | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 62 | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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