Phyre 2 Results for P66817

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Email | l.a.kelley@imperial.ac.uk
Description | P66817
Date | Thu Jan 5 12:10:20 GMT 2012
Unique Job ID | 60c8247a25ae4b3a

Summary |

Top model
Image coloured by rainbow N → C terminus
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Model (left) based on template c2yvaB_
Top template information
PDB header:dna binding protein Chain: B: PDB Molecule:dnaa initiator-associating protein diaa; PDBTitle: crystal structure of escherichia coli diaa
Confidence and coverage
Confidence: | 100.0% | Coverage: | 98%
193 residues ( 98% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | Q | E | R | I | K | A | C | F | T | E | S | I | Q | T | Q | I | A | A | A | E | A | L | P | D | A | I | S | R | A | A | M | T | L | V | Q | S | L | L | N | G | N | K | I | L | C | C | G | N | G | T | S | A | A | N | A | Q | H | F | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | A | S | M | I | N | R | F | E | T | E | R | P | S | L | P | A | I | A | L | N | T | D | N | V | V | L | T | A | I | A | N | D | R | L | H | D | E | V | Y | A | K | Q | V | R | A | L | G | H | A | G | D | V | L | L | A | I | S | T | R | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  | ? |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | N | S | R | D | I | V | K | A | V | E | A | A | V | T | R | D | M | T | I | V | A | L | T | G | Y | D | G | G | E | L | A | G | L | L | G | P | Q | D | V | E | I | R | I | P | S | H | R | S | A | R | I | Q | E | M | H | M | L | T | V | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | .
Sequence |  | C | L | C | D | L | I | D | N | T | L | F | P | H | Q | D | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c2yvaB_ |

### PDB 2yva chain B

Region: 1 - 193
Aligned: 193
Modelled: 193
Confidence: 100.0%
Identity: 100%
PDB header:dna binding protein
Chain: B: PDB Molecule:dnaa initiator-associating protein diaa;
PDBTitle: crystal structure of escherichia coli diaa

Phyre2
2 |
| d1x92a_ |

### PDB 1x92 chain A

Region: 1 - 193
Aligned: 193
Modelled: 193
Confidence: 100.0%
Identity: 58%
Fold: SIS domain
Superfamily: SIS domain
Family: mono-SIS domain

Phyre2
3 |
| d1tk9a_ |

### PDB 1tk9 chain A

Region: 1 - 190
Aligned: 186
Modelled: 190
Confidence: 100.0%
Identity: 40%
Fold: SIS domain
Superfamily: SIS domain
Family: mono-SIS domain

Phyre2
4 |
| c2x3yA_ |

### PDB 2x3y chain A

Region: 3 - 192
Aligned: 187
Modelled: 190
Confidence: 100.0%
Identity: 40%
PDB header:isomerase
Chain: A: PDB Molecule:phosphoheptose isomerase;
PDBTitle: crystal structure of gmha from burkholderia pseudomallei

Phyre2
5 |
| c3trjC_ |

### PDB 3trj chain C

Region: 3 - 189
Aligned: 180
Modelled: 187
Confidence: 100.0%
Identity: 46%
PDB header:isomerase
Chain: C: PDB Molecule:phosphoheptose isomerase;
PDBTitle: structure of a phosphoheptose isomerase from francisella tularensis

Phyre2
6 |
| d1x94a_ |

### PDB 1x94 chain A

Region: 1 - 190
Aligned: 171
Modelled: 174
Confidence: 100.0%
Identity: 42%
Fold: SIS domain
Superfamily: SIS domain
Family: mono-SIS domain

Phyre2
7 |
| c3cvjB_ |

### PDB 3cvj chain B

Region: 2 - 190
Aligned: 185
Modelled: 187
Confidence: 99.9%
Identity: 17%
PDB header:isomerase
Chain: B: PDB Molecule:putative phosphoheptose isomerase;
PDBTitle: crystal structure of a putative phosphoheptose isomerase (bh3325) from2 bacillus halodurans c-125 at 2.00 a resolution

Phyre2
8 |
| d1nria_ |

### PDB 1nri chain A

Region: 2 - 190
Aligned: 186
Modelled: 188
Confidence: 99.9%
Identity: 16%
Fold: SIS domain
Superfamily: SIS domain
Family: mono-SIS domain

Phyre2
9 |
| c1nriA_ |

### PDB 1nri chain A

Region: 2 - 190
Aligned: 186
Modelled: 188
Confidence: 99.9%
Identity: 16%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein hi0754;
PDBTitle: crystal structure of putative phosphosugar isomerase hi0754 from2 haemophilus influenzae

Phyre2
10 |
| c3fxaA_ |

### PDB 3fxa chain A

Region: 1 - 196
Aligned: 169
Modelled: 181
Confidence: 99.9%
Identity: 20%
PDB header:sugar binding protein
Chain: A: PDB Molecule:sis domain protein;
PDBTitle: crystal structure of a putative sugar-phosphate isomerase2 (lmof2365_0531) from listeria monocytogenes str. 4b f2365 at 1.60 a3 resolution

Phyre2
11 |
| c3etnD_ |

### PDB 3etn chain D

Region: 1 - 196
Aligned: 168
Modelled: 174
Confidence: 99.9%
Identity: 18%
PDB header:isomerase
Chain: D: PDB Molecule:putative phosphosugar isomerase involved in capsule
PDBTitle: crystal structure of putative phosphosugar isomerase involved in2 capsule formation (yp_209877.1) from bacteroides fragilis nctc 93433 at 1.70 a resolution

Phyre2
12 |
| c2xhzC_ |

### PDB 2xhz chain C

Region: 3 - 189
Aligned: 160
Modelled: 172
Confidence: 99.8%
Identity: 14%
PDB header:isomerase
Chain: C: PDB Molecule:arabinose 5-phosphate isomerase;
PDBTitle: probing the active site of the sugar isomerase domain from e. coli2 arabinose-5-phosphate isomerase via x-ray crystallography

Phyre2
13 |
| d1m3sa_ |

### PDB 1m3s chain A

Region: 4 - 196
Aligned: 161
Modelled: 173
Confidence: 99.8%
Identity: 17%
Fold: SIS domain
Superfamily: SIS domain
Family: mono-SIS domain

Phyre2
14 |
| c3shoA_ |

### PDB 3sho chain A

Region: 2 - 189
Aligned: 161
Modelled: 174
Confidence: 99.8%
Identity: 22%
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, rpir family;
PDBTitle: crystal structure of rpir transcription factor from sphaerobacter2 thermophilus (sugar isomerase domain)

Phyre2
15 |
| d1vima_ |

### PDB 1vim chain A

Region: 3 - 190
Aligned: 156
Modelled: 168
Confidence: 99.8%
Identity: 19%
Fold: SIS domain
Superfamily: SIS domain
Family: mono-SIS domain

Phyre2
16 |
| d1jeoa_ |

### PDB 1jeo chain A

Region: 7 - 190
Aligned: 152
Modelled: 164
Confidence: 99.7%
Identity: 16%
Fold: SIS domain
Superfamily: SIS domain
Family: mono-SIS domain

Phyre2
17 |
| c3hbaA_ |

### PDB 3hba chain A

Region: 8 - 187
Aligned: 157
Modelled: 163
Confidence: 99.7%
Identity: 17%
PDB header:isomerase
Chain: A: PDB Molecule:putative phosphosugar isomerase;
PDBTitle: crystal structure of a putative phosphosugar isomerase (sden_2705)2 from shewanella denitrificans os217 at 2.00 a resolution

Phyre2
18 |
| c2a3nA_ |

### PDB 2a3n chain A

Region: 10 - 185
Aligned: 150
Modelled: 161
Confidence: 99.7%
Identity: 15%
PDB header:sugar binding protein
Chain: A: PDB Molecule:putative glucosamine-fructose-6-phosphate aminotransferase;
PDBTitle: crystal structure of a putative glucosamine-fructose-6-phosphate2 aminotransferase (stm4540.s) from salmonella typhimurium lt2 at 1.353 a resolution

Phyre2
19 |
| c3fj1A_ |

### PDB 3fj1 chain A

Region: 1 - 188
Aligned: 162
Modelled: 173
Confidence: 99.7%
Identity: 19%
PDB header:isomerase
Chain: A: PDB Molecule:putative phosphosugar isomerase;
PDBTitle: crystal structure of putative phosphosugar isomerase (yp_167080.1)2 from silicibacter pomeroyi dss-3 at 1.75 a resolution

Phyre2
20 |
| c3knzA_ |

### PDB 3knz chain A

Region: 7 - 196
Aligned: 164
Modelled: 169
Confidence: 99.7%
Identity: 15%
PDB header:sugar binding protein
Chain: A: PDB Molecule:putative sugar binding protein;
PDBTitle: crystal structure of putative sugar binding protein (np_459565.1) from2 salmonella typhimurium lt2 at 2.50 a resolution

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2yvaB_ |
|  | 100.0 | 100 | PDB header:dna binding protein Chain: B: PDB Molecule:dnaa initiator-associating protein diaa; PDBTitle: crystal structure of escherichia coli diaa
2 | d1x92a_ |
|  | 100.0 | 58 | Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain
3 | d1tk9a_ |
|  | 100.0 | 40 | Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain
4 | c2x3yA_ |
|  | 100.0 | 40 | PDB header:isomerase Chain: A: PDB Molecule:phosphoheptose isomerase; PDBTitle: crystal structure of gmha from burkholderia pseudomallei
5 | c3trjC_ |
|  | 100.0 | 46 | PDB header:isomerase Chain: C: PDB Molecule:phosphoheptose isomerase; PDBTitle: structure of a phosphoheptose isomerase from francisella tularensis
6 | d1x94a_ |
|  | 100.0 | 42 | Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain
7 | c3cvjB_ |
|  | 99.9 | 17 | PDB header:isomerase Chain: B: PDB Molecule:putative phosphoheptose isomerase; PDBTitle: crystal structure of a putative phosphoheptose isomerase (bh3325) from2 bacillus halodurans c-125 at 2.00 a resolution
8 | d1nria_ |
|  | 99.9 | 16 | Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain
9 | c1nriA_ |
|  | 99.9 | 16 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein hi0754; PDBTitle: crystal structure of putative phosphosugar isomerase hi0754 from2 haemophilus influenzae
10 | c3fxaA_ |
|  | 99.9 | 20 | PDB header:sugar binding protein Chain: A: PDB Molecule:sis domain protein; PDBTitle: crystal structure of a putative sugar-phosphate isomerase2 (lmof2365_0531) from listeria monocytogenes str. 4b f2365 at 1.60 a3 resolution
11 | c3etnD_ |
|  | 99.9 | 18 | PDB header:isomerase Chain: D: PDB Molecule:putative phosphosugar isomerase involved in capsule PDBTitle: crystal structure of putative phosphosugar isomerase involved in2 capsule formation (yp_209877.1) from bacteroides fragilis nctc 93433 at 1.70 a resolution
12 | c2xhzC_ |
|  | 99.8 | 14 | PDB header:isomerase Chain: C: PDB Molecule:arabinose 5-phosphate isomerase; PDBTitle: probing the active site of the sugar isomerase domain from e. coli2 arabinose-5-phosphate isomerase via x-ray crystallography
13 | d1m3sa_ |
|  | 99.8 | 17 | Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain
14 | c3shoA_ |
|  | 99.8 | 22 | PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, rpir family; PDBTitle: crystal structure of rpir transcription factor from sphaerobacter2 thermophilus (sugar isomerase domain)
15 | d1vima_ |
|  | 99.8 | 19 | Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain
16 | d1jeoa_ |
|  | 99.7 | 16 | Fold:SIS domain Superfamily:SIS domain Family:mono-SIS domain
17 | c3hbaA_ |
|  | 99.7 | 17 | PDB header:isomerase Chain: A: PDB Molecule:putative phosphosugar isomerase; PDBTitle: crystal structure of a putative phosphosugar isomerase (sden_2705)2 from shewanella denitrificans os217 at 2.00 a resolution
18 | c2a3nA_ |
|  | 99.7 | 15 | PDB header:sugar binding protein Chain: A: PDB Molecule:putative glucosamine-fructose-6-phosphate aminotransferase; PDBTitle: crystal structure of a putative glucosamine-fructose-6-phosphate2 aminotransferase (stm4540.s) from salmonella typhimurium lt2 at 1.353 a resolution
19 | c3fj1A_ |
|  | 99.7 | 19 | PDB header:isomerase Chain: A: PDB Molecule:putative phosphosugar isomerase; PDBTitle: crystal structure of putative phosphosugar isomerase (yp_167080.1)2 from silicibacter pomeroyi dss-3 at 1.75 a resolution
20 | c3knzA_ |
|  | 99.7 | 15 | PDB header:sugar binding protein Chain: A: PDB Molecule:putative sugar binding protein; PDBTitle: crystal structure of putative sugar binding protein (np_459565.1) from2 salmonella typhimurium lt2 at 2.50 a resolution
21 | c2puwA_ |
| not modelled | 99.6 | 13 | PDB header:transferase Chain: A: PDB Molecule:isomerase domain of glutamine-fructose-6-phosphate PDBTitle: the crystal structure of isomerase domain of glucosamine-6-phosphate2 synthase from candida albicans
22 | d1j5xa_ |
| not modelled | 99.6 | 19 | Fold:SIS domain Superfamily:SIS domain Family:double-SIS domain
23 | c2amlB_ |
| not modelled | 99.6 | 19 | PDB header:transferase Chain: B: PDB Molecule:sis domain protein; PDBTitle: crystal structure of lmo0035 protein (46906266) from listeria2 monocytogenes 4b f2365 at 1.50 a resolution
24 | c2zj3A_ |
| not modelled | 99.6 | 14 | PDB header:transferase Chain: A: PDB Molecule:glucosamine--fructose-6-phosphate PDBTitle: isomerase domain of human glucose:fructose-6-phosphate2 amidotransferase
25 | c3g68A_ |
| not modelled | 99.6 | 14 | PDB header:isomerase Chain: A: PDB Molecule:putative phosphosugar isomerase; PDBTitle: crystal structure of a putative phosphosugar isomerase (cd3275) from2 clostridium difficile 630 at 1.80 a resolution
26 | c3euaD_ |
| not modelled | 99.6 | 14 | PDB header:isomerase Chain: D: PDB Molecule:putative fructose-aminoacid-6-phosphate deglycase; PDBTitle: crystal structure of a putative phosphosugar isomerase (bsu32610) from2 bacillus subtilis at 1.90 a resolution
27 | c3tbfA_ |
| not modelled | 99.6 | 12 | PDB header:transferase Chain: A: PDB Molecule:glucosamine--fructose-6-phosphate aminotransferase PDBTitle: c-terminal domain of glucosamine-fructose-6-phosphate aminotransferase2 from francisella tularensis.
28 | d1moqa_ |
| not modelled | 99.6 | 13 | Fold:SIS domain Superfamily:SIS domain Family:double-SIS domain
29 | d1x9ia_ |
| not modelled | 99.5 | 24 | Fold:SIS domain Superfamily:SIS domain Family:double-SIS domain
30 | c3fkjA_ |
| not modelled | 99.5 | 16 | PDB header:isomerase Chain: A: PDB Molecule:putative phosphosugar isomerases; PDBTitle: crystal structure of a putative phosphosugar isomerase (stm_0572) from2 salmonella typhimurium lt2 at 2.12 a resolution
31 | c2decA_ |
| not modelled | 99.4 | 15 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:325aa long hypothetical protein; PDBTitle: crystal structure of the ph0510 protein from pyrococcus horikoshii ot3
32 | c3i0zB_ |
| not modelled | 99.4 | 22 | PDB header:isomerase Chain: B: PDB Molecule:putative tagatose-6-phosphate ketose/aldose isomerase; PDBTitle: crystal structure of putative putative tagatose-6-phosphate2 ketose/aldose isomerase (np_344614.1) from streptococcus pneumoniae3 tigr4 at 1.70 a resolution
33 | c3odpA_ |
| not modelled | 99.4 | 17 | PDB header:isomerase Chain: A: PDB Molecule:putative tagatose-6-phosphate ketose/aldose isomerase; PDBTitle: crystal structure of a putative tagatose-6-phosphate ketose/aldose2 isomerase (nt01cx_0292) from clostridium novyi nt at 2.35 a3 resolution
34 | c3c3jA_ |
| not modelled | 99.3 | 24 | PDB header:isomerase Chain: A: PDB Molecule:putative tagatose-6-phosphate ketose/aldose isomerase; PDBTitle: crystal structure of tagatose-6-phosphate ketose/aldose isomerase from2 escherichia coli
35 | c1jxaA_ |
| not modelled | 99.3 | 12 | PDB header:transferase Chain: A: PDB Molecule:glucosamine 6-phosphate synthase; PDBTitle: glucosamine 6-phosphate synthase with glucose 6-phosphate
36 | c2q8nB_ |
| not modelled | 98.4 | 14 | PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of glucose-6-phosphate isomerase (ec2 5.3.1.9) (tm1385) from thermotoga maritima at 1.82 a3 resolution
37 | c3ff1B_ |
| not modelled | 98.3 | 19 | PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: structure of glucose 6-phosphate isomerase from staphylococcus aureus
38 | d1c7qa_ |
| not modelled | 98.1 | 16 | Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI
39 | c3jx9B_ |
| not modelled | 98.0 | 13 | PDB header:isomerase Chain: B: PDB Molecule:putative phosphoheptose isomerase; PDBTitle: crystal structure of putative phosphoheptose isomerase2 (yp_001815198.1) from exiguobacterium sp. 255-15 at 1.95 a resolution
40 | c1zzgB_ |
| not modelled | 97.9 | 16 | PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of hypothetical protein tt0462 from thermus2 thermophilus hb8
41 | c3ljkA_ |
| not modelled | 97.6 | 12 | PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: glucose-6-phosphate isomerase from francisella tularensis.
42 | d1gzda_ |
| not modelled | 97.4 | 15 | Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI
43 | c2wu8A_ |
| not modelled | 97.4 | 15 | PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: structural studies of phosphoglucose isomerase from2 mycobacterium tuberculosis h37rv
44 | d1u0fa_ |
| not modelled | 97.4 | 16 | Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI
45 | d1iata_ |
| not modelled | 97.4 | 14 | Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI
46 | d1hm5a_ |
| not modelled | 97.3 | 14 | Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI
47 | c3hjbA_ |
| not modelled | 97.3 | 15 | PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: 1.5 angstrom crystal structure of glucose-6-phosphate isomerase from2 vibrio cholerae.
48 | c1t10A_ |
| not modelled | 97.2 | 12 | PDB header:isomerase Chain: A: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: phosphoglucose isomerase from leishmania mexicana in complex with2 substrate d-fructose-6-phosphate
49 | c2o2cB_ |
| not modelled | 97.2 | 15 | PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase, glycosomal; PDBTitle: crystal structure of phosphoglucose isomerase from t. brucei2 containing glucose-6-phosphate in the active site
50 | d1q50a_ |
| not modelled | 97.1 | 14 | Fold:SIS domain Superfamily:SIS domain Family:Phosphoglucose isomerase, PGI
51 | c3nbuC_ |
| not modelled | 97.1 | 12 | PDB header:isomerase Chain: C: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of pgi glucosephosphate isomerase
52 | c3ujhB_ |
| not modelled | 96.8 | 13 | PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of substrate-bound glucose-6-phosphate isomerase2 from toxoplasma gondii
53 | c3bbnB_ |
| not modelled | 96.3 | 17 | PDB header:ribosome Chain: B: PDB Molecule:ribosomal protein s2; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome.
54 | c3pr3B_ |
| not modelled | 96.3 | 19 | PDB header:isomerase Chain: B: PDB Molecule:glucose-6-phosphate isomerase; PDBTitle: crystal structure of plasmodium falciparum glucose-6-phosphate2 isomerase (pf14_0341) in complex with fructose-6-phosphate
55 | c2zkqb_ |
| not modelled | 96.2 | 20 | PDB header:ribosomal protein/rna Chain: B: PDB Molecule:rna expansion segment es3; PDBTitle: structure of a mammalian ribosomal 40s subunit within an2 80s complex obtained by docking homology models of the rna3 and proteins into an 8.7 a cryo-em map
56 | c3iz6A_ |
| not modelled | 96.1 | 15 | PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein sa (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 5.5 a2 cryo-em map of triticum aestivum translating 80s ribosome
57 | c3bchA_ |
| not modelled | 95.8 | 20 | PDB header:cell adhesion, ribosomal protein Chain: A: PDB Molecule:40s ribosomal protein sa; PDBTitle: crystal structure of the human laminin receptor precursor
58 | d1y5ia2 |
| not modelled | 95.7 | 8 | Fold:Formate dehydrogenase/DMSO reductase, domains 1-3 Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3 Family:Formate dehydrogenase/DMSO reductase, domains 1-3
59 | c1h0hA_ |
| not modelled | 95.7 | 11 | PDB header:dehydrogenase Chain: A: PDB Molecule:formate dehydrogenase (large subunit); PDBTitle: tungsten containing formate dehydrogenase from2 desulfovibrio gigas
60 | d2jioa2 |
| not modelled | 95.7 | 13 | Fold:Formate dehydrogenase/DMSO reductase, domains 1-3 Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3 Family:Formate dehydrogenase/DMSO reductase, domains 1-3
61 | c3izbA_ |
| not modelled | 95.7 | 15 | PDB header:ribosome Chain: A: PDB Molecule:40s ribosomal protein rps0 (s2p); PDBTitle: localization of the small subunit ribosomal proteins into a 6.1 a2 cryo-em map of saccharomyces cerevisiae translating 80s ribosome
62 | c1s1hB_ |
| not modelled | 95.6 | 14 | PDB header:ribosome Chain: B: PDB Molecule:40s ribosomal protein s0-a; PDBTitle: structure of the ribosomal 80s-eef2-sordarin complex from2 yeast obtained by docking atomic models for rna and protein3 components into a 11.7 a cryo-em map. this file, 1s1h,4 contains 40s subunit. the 60s ribosomal subunit is in file5 1s1i.
63 | c1y5iA_ |
| not modelled | 95.5 | 8 | PDB header:oxidoreductase Chain: A: PDB Molecule:respiratory nitrate reductase 1 alpha chain; PDBTitle: the crystal structure of the narghi mutant nari-k86a
64 | c2v45A_ |
| not modelled | 95.5 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic nitrate reductase; PDBTitle: a new catalytic mechanism of periplasmic nitrate reductase2 from desulfovibrio desulfuricans atcc 27774 from3 crystallographic and epr data and based on detailed4 analysis of the sixth ligand
65 | d1ogya2 |
| not modelled | 95.4 | 10 | Fold:Formate dehydrogenase/DMSO reductase, domains 1-3 Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3 Family:Formate dehydrogenase/DMSO reductase, domains 1-3
66 | c2xznB_ |
| not modelled | 95.4 | 19 | PDB header:ribosome Chain: B: PDB Molecule:rps0e; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 2
67 | d1h0ha2 |
| not modelled | 95.3 | 12 | Fold:Formate dehydrogenase/DMSO reductase, domains 1-3 Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3 Family:Formate dehydrogenase/DMSO reductase, domains 1-3
68 | c2ivfA_ |
| not modelled | 95.3 | 11 | PDB header:oxidoreductase Chain: A: PDB Molecule:ethylbenzene dehydrogenase alpha-subunit; PDBTitle: ethylbenzene dehydrogenase from aromatoleum aromaticum
69 | d2uubb1 |
| not modelled | 95.2 | 23 | Fold:Flavodoxin-like Superfamily:Ribosomal protein S2 Family:Ribosomal protein S2
70 | d2iv2x2 |
| not modelled | 95.2 | 9 | Fold:Formate dehydrogenase/DMSO reductase, domains 1-3 Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3 Family:Formate dehydrogenase/DMSO reductase, domains 1-3
71 | c2e7zA_ |
| not modelled | 95.1 | 13 | PDB header:lyase Chain: A: PDB Molecule:acetylene hydratase ahy; PDBTitle: acetylene hydratase from pelobacter acetylenicus
72 | c1kqgA_ |
| not modelled | 95.0 | 9 | PDB header:oxidoreductase Chain: A: PDB Molecule:formate dehydrogenase, nitrate-inducible, major subunit; PDBTitle: formate dehydrogenase n from e. coli
73 | d2gy9b1 |
| not modelled | 94.9 | 20 | Fold:Flavodoxin-like Superfamily:Ribosomal protein S2 Family:Ribosomal protein S2
74 | c2nyaF_ |
| not modelled | 94.8 | 9 | PDB header:oxidoreductase Chain: F: PDB Molecule:periplasmic nitrate reductase; PDBTitle: crystal structure of the periplasmic nitrate reductase2 (nap) from escherichia coli
75 | d1kqfa2 |
| not modelled | 94.7 | 9 | Fold:Formate dehydrogenase/DMSO reductase, domains 1-3 Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3 Family:Formate dehydrogenase/DMSO reductase, domains 1-3
76 | c1ogyA_ |
| not modelled | 94.7 | 10 | PDB header:oxidoreductase Chain: A: PDB Molecule:periplasmic nitrate reductase; PDBTitle: crystal structure of the heterodimeric nitrate reductase2 from rhodobacter sphaeroides
77 | c2vpyE_ |
| not modelled | 94.6 | 11 | PDB header:oxidoreductase Chain: E: PDB Molecule:thiosulfate reductase; PDBTitle: polysulfide reductase with bound quinone inhibitor,2 pentachlorophenol (pcp)
78 | c2iv2X_ |
| not modelled | 94.4 | 9 | PDB header:oxidoreductase Chain: X: PDB Molecule:formate dehydrogenase h; PDBTitle: reinterpretation of reduced form of formate dehydrogenase h2 from e. coli
79 | d1vi6a_ |
| not modelled | 93.8 | 21 | Fold:Flavodoxin-like Superfamily:Ribosomal protein S2 Family:Ribosomal protein S2
80 | d1vlfm2 |
| not modelled | 92.8 | 5 | Fold:Formate dehydrogenase/DMSO reductase, domains 1-3 Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3 Family:Formate dehydrogenase/DMSO reductase, domains 1-3
81 | c1tmoA_ |
| not modelled | 92.1 | 9 | PDB header:oxidoreductase Chain: A: PDB Molecule:trimethylamine n-oxide reductase; PDBTitle: trimethylamine n-oxide reductase from shewanella massilia
82 | d1dmra2 |
| not modelled | 92.1 | 11 | Fold:Formate dehydrogenase/DMSO reductase, domains 1-3 Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3 Family:Formate dehydrogenase/DMSO reductase, domains 1-3
83 | d1p3da1 |
| not modelled | 91.5 | 11 | Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain
84 | c1vlfQ_ |
| not modelled | 91.5 | 5 | PDB header:oxidoreductase Chain: Q: PDB Molecule:pyrogallol hydroxytransferase large subunit; PDBTitle: crystal structure of pyrogallol-phloroglucinol2 transhydroxylase from pelobacter acidigallici complexed3 with inhibitor 1,2,4,5-tetrahydroxy-benzene
85 | c3jwpA_ |
| not modelled | 90.8 | 13 | PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein sir2 homologue; PDBTitle: crystal structure of plasmodium falciparum sir2a (pf13_0152) in2 complex with amp
86 | c3uagA_ |
| not modelled | 90.3 | 16 | PDB header:ligase Chain: A: PDB Molecule:protein (udp-n-acetylmuramoyl-l-alanine:d- PDBTitle: udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase
87 | c2axqA_ |
| not modelled | 90.2 | 17 | PDB header:oxidoreductase Chain: A: PDB Molecule:saccharopine dehydrogenase; PDBTitle: apo histidine-tagged saccharopine dehydrogenase (l-glu2 forming) from saccharomyces cerevisiae
88 | d1tmoa2 |
| not modelled | 89.7 | 9 | Fold:Formate dehydrogenase/DMSO reductase, domains 1-3 Superfamily:Formate dehydrogenase/DMSO reductase, domains 1-3 Family:Formate dehydrogenase/DMSO reductase, domains 1-3
89 | c1h5nC_ |
| not modelled | 89.5 | 9 | PDB header:oxidoreductase Chain: C: PDB Molecule:dmso reductase; PDBTitle: dmso reductase modified by the presence of dms and air
90 | d2ax3a2 |
| not modelled | 89.0 | 12 | Fold:YjeF N-terminal domain-like Superfamily:YjeF N-terminal domain-like Family:YjeF N-terminal domain-like
91 | d1j6ua1 |
| not modelled | 88.6 | 17 | Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain
92 | c3lk7A_ |
| not modelled | 88.5 | 16 | PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramoylalanine--d-glutamate ligase; PDBTitle: the crystal structure of udp-n-acetylmuramoylalanine-d-2 glutamate (murd) ligase from streptococcus agalactiae to3 1.5a
93 | d2jfga1 |
| not modelled | 88.5 | 14 | Fold:MurCD N-terminal domain Superfamily:MurCD N-terminal domain Family:MurCD N-terminal domain
94 | c2q1yB_ |
| not modelled | 88.2 | 22 | PDB header:cell cycle, signaling protein Chain: B: PDB Molecule:cell division protein ftsz; PDBTitle: crystal structure of cell division protein ftsz from mycobacterium2 tuberculosis in complex with gtp-gamma-s
95 | d1ma3a_ |
| not modelled | 88.0 | 7 | Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators
96 | c1j6uA_ |
| not modelled | 86.9 | 19 | PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate-alanine ligase murc; PDBTitle: crystal structure of udp-n-acetylmuramate-alanine ligase2 murc (tm0231) from thermotoga maritima at 2.3 a resolution
97 | c2f00A_ |
| not modelled | 86.8 | 18 | PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate--l-alanine ligase; PDBTitle: escherichia coli murc
98 | d2b4ya1 |
| not modelled | 86.7 | 9 | Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators
99 | c1w59B_ |
| not modelled | 86.2 | 19 | PDB header:cell division Chain: B: PDB Molecule:cell division protein ftsz homolog 1; PDBTitle: ftsz dimer, empty (m. jannaschii)
100 | c3k35D_ |
| not modelled | 85.9 | 12 | PDB header:hydrolase Chain: D: PDB Molecule:nad-dependent deacetylase sirtuin-6; PDBTitle: crystal structure of human sirt6
101 | d1m2ka_ |
| not modelled | 85.8 | 11 | Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators
102 | d1yc5a1 |
| not modelled | 85.7 | 5 | Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators
103 | c3d3jA_ |
| not modelled | 85.3 | 11 | PDB header:protein binding Chain: A: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of human edc3p
104 | c3pkiF_ |
| not modelled | 85.0 | 12 | PDB header:hydrolase Chain: F: PDB Molecule:nad-dependent deacetylase sirtuin-6; PDBTitle: human sirt6 crystal structure in complex with adp ribose
105 | c2ax3A_ |
| not modelled | 84.2 | 12 | PDB header:transferase Chain: A: PDB Molecule:hypothetical protein tm0922; PDBTitle: crystal structure of a putative carbohydrate kinase (tm0922) from2 thermotoga maritima msb8 at 2.25 a resolution
106 | c2rhoB_ |
| not modelled | 83.2 | 22 | PDB header:cell cycle Chain: B: PDB Molecule:cell division protein ftsz; PDBTitle: synthetic gene encoded bacillus subtilis ftsz ncs dimer with2 bound gdp and gtp-gamma-s
107 | c1ir6A_ |
| not modelled | 82.9 | 14 | PDB header:hydrolase Chain: A: PDB Molecule:exonuclease recj; PDBTitle: crystal structure of exonuclease recj bound to manganese
108 | d1ir6a_ |
| not modelled | 82.9 | 14 | Fold:DHH phosphoesterases Superfamily:DHH phosphoesterases Family:Exonuclease RecJ
109 | d1pjqa1 |
| not modelled | 81.5 | 21 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Siroheme synthase N-terminal domain-like
110 | d1rq2a1 |
| not modelled | 80.4 | 25 | Fold:Tubulin nucleotide-binding domain-like Superfamily:Tubulin nucleotide-binding domain-like Family:Tubulin, GTPase domain
111 | c1e5lA_ |
| not modelled | 78.5 | 15 | PDB header:oxidoreductase Chain: A: PDB Molecule:saccharopine reductase; PDBTitle: apo saccharopine reductase from magnaporthe grisea
112 | d1s5pa_ |
| not modelled | 78.4 | 21 | Fold:DHS-like NAD/FAD-binding domain Superfamily:DHS-like NAD/FAD-binding domain Family:Sir2 family of transcriptional regulators
113 | c2dg2D_ |
| not modelled | 77.2 | 11 | PDB header:protein binding Chain: D: PDB Molecule:apolipoprotein a-i binding protein; PDBTitle: crystal structure of mouse apolipoprotein a-i binding2 protein
114 | c3eagA_ |
| not modelled | 77.2 | 23 | PDB header:ligase Chain: A: PDB Molecule:udp-n-acetylmuramate:l-alanyl-gamma-d-glutamyl-meso- PDBTitle: the crystal structure of udp-n-acetylmuramate:l-alanyl-gamma-d-2 glutamyl-meso-diaminopimelate ligase (mpl) from neisseria3 meningitides
115 | c3d3kD_ |
| not modelled | 77.1 | 12 | PDB header:protein binding Chain: D: PDB Molecule:enhancer of mrna-decapping protein 3; PDBTitle: crystal structure of human edc3p
116 | c2vawA_ |
| not modelled | 76.9 | 22 | PDB header:cell cycle Chain: A: PDB Molecule:cell division protein ftsz; PDBTitle: ftsz pseudomonas aeruginosa gdp
117 | c3q2oB_ |
| not modelled | 76.8 | 21 | PDB header:lyase Chain: B: PDB Molecule:phosphoribosylaminoimidazole carboxylase, atpase subunit; PDBTitle: crystal structure of purk: n5-carboxyaminoimidazole ribonucleotide2 synthetase
118 | c3ijpA_ |
| not modelled | 76.7 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:dihydrodipicolinate reductase; PDBTitle: crystal structure of dihydrodipicolinate reductase from2 bartonella henselae at 2.0a resolution
119 | d1ibja_ |
| not modelled | 74.2 | 17 | Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like
120 | d1kjqa2 |
| not modelled | 74.2 | 8 | Fold:PreATP-grasp domain Superfamily:PreATP-grasp domain Family:BC N-terminal domain-like

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0