PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3shoA_

Fold library id	PDB Header	Molecule	Title
c3shoA_	PDB header: transcription regulator	Chain: A: PDB Molecule: transcriptional regulator, rpir family;	PDBTitle: crystal structure of rpir transcription factor from sphaerobacter2 thermophilus (sugar isomerase domain)

Links to external resources
Added to library: Sat Aug 13 09:51:52 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D R Q Q L P V Q V F T N D I E N L N Q T L N Q T Q P E A I E A A V E A I R A D H V I V V G X G F S A A V A V F L G H G L N S L G I R T T V L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T
S
G G G T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T E G G S T L T I T L A N L R P T D L X I G V S V W R Y L R D T V A A L A G A A E R G V P T X A L T D S S V S P P A R I A D H V L V A A T R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
S S
T T
S
T T S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . .

Sequence G V G H S L S P V G L I A V V N L L L A E I A V R E P E R A L A V L R E V D R L Y R E Q G X

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	R	Q	Q	L	P	V	Q	V	F	T	N	D	I	E	N	L	N	Q	T	L	N	Q	T	Q	P	E	A	I	E	A	A	V	E	A	I	R	A	D	H	V	I	V	V	G	X	G	F	S	A	A	V	A	V	F	L	G	H	G	L	N	S	L	G	I	R	T	T	V	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G																			T																S								G	G	G														T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	E	G	G	S	T	L	T	I	T	L	A	N	L	R	P	T	D	L	X	I	G	V	S	V	W	R	Y	L	R	D	T	V	A	A	L	A	G	A	A	E	R	G	V	P	T	X	A	L	T	D	S	S	V	S	P	P	A	R	I	A	D	H	V	L	V	A	A	T	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T									T			T	T									S	S															T	T								S		T	T	S							S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Sequence	G	V	G	H	S	L	S	P	V	G	L	I	A	V	V	N	L	L	L	A	E	I	A	V	R	E	P	E	R	A	L	A	V	L	R	E	V	D	R	L	Y	R	E	Q	G	X
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	S	S