Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionA1L314
DateWed Jul 10 14:33:54 BST 2013
Unique Job IDe8d85519151ae0a4
SequenceMNSFMALVLI ... Download FASTA

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:68.521 Y:69.810 Z:43.191
Model (left) based on template c2qqhA_
Top template information
PDB header:immune system, membrane protein
Chain: A: PDB Molecule:complement component c8 alpha chain;
PDBTitle: structure of c8a-macpf reveals mechanism of membrane attack2 in complement immune defense
Confidence and coverage
Confidence:100.0% Coverage: 38%
269 residues ( 38% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
356 residues ( 50%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MNSFMALVLIWMIIACAEADKPLGETGTTGFQICKNALKLPVLEVLPGGGWDNLRNVDMG
Secondary structure 
SS confidence 
Disorder  ?????
?
????????????
??
???
??
?
?
?
????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  RVMDLTYTNCKTTEDGQYIIPDEVYTIPQKESNLEMNSEVLESWMNYQSTTSLSINTELA
Secondary structure 
SS confidence 
Disorder 
?
????
?
?
???
???
???
??
?
???
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  LFSRVNGKFSTEFQRMKTLQVKDQAVTTRVQVRNRIYTVKTTPTSELSLGFTKALMDICD
Secondary structure 
SS confidence 
Disorder 
?
????????????
??
??
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  QLEKNQTKMATYLAELLILNYGTHVITSVDAGAALVQEDHVRSSFLLDNQNSQNTVTASA
Secondary structure 
SS confidence 
Disorder 
??
??
????????????
???????????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  GIAFLNIVNFKVETDYISQTSLTKDYLSNRTNSRVQSFGGVPFYPGITLETWQKGITNHL
Secondary structure 
SS confidence 
Disorder 
?
??????????
????????
?
?????
?
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  VAIDRAGLPLHFFIKPDKLPGLPGPLVKKLSKTVETAVRHYYTFNTHPGCTNVDSPNFNF
Secondary structure 
SS confidence 
Disorder 
??
?
??????????
????
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  QANMDDDSCDAKVTNFTFGGVYQECTELSGDVLCQNLEQKNLLTGDFSCPPGYSPVHLLS
Secondary structure 
SS confidence 
Disorder 
???
?
????
?????
???
?
??
?
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  QTHEEGYSRLECKKKCTLKIFCKTVCEDVFRVAKAEFRAYWCVAAGQVPDNSGLLFGGVF
Secondary structure 
SS confidence 
Disorder  ????????
?
?
????????
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  TDKTINPMTNAQSCPAGYIPLNLFESLKVCVSLDYELGFKFSVPFGGFFSCIMGNPLVNS
Secondary structure 
SS confidence 
Disorder 
???????
???
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  DTAKDVRAPSLKKCPGGFSQHLAVISDGCQVSYCVKAGIFTGGSLLPVRLPPYTKPPLMS
Secondary structure 
SS confidence 
Disorder  ??????
???
?
?
?????????
??
???????
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  QVATNTVIVTNSETARSWIKDPQTNQWKLGEPLELRRAMTVIHGDSNGMSGGEAAGITLG
Secondary structure 
SS confidence 
Disorder  ??
?
??
?
??
?????????????????????????????
Disorder confidence 
 
   .........670.........680.........690.........700.........710...
Sequence  VTIALGIVITLAIYGTRKYKKKEYQEIEEQESLVGSLATDATVLNGEEDPSPA
Secondary structure 
SS confidence 
Disorder 
????
????????????????????????????????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered ( 41%)
Alpha helix ( 22%)
Beta strand ( 31%)

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2qqh chain A

3D model

Region: 32 - 341
Aligned: 269
Modelled: 275
Confidence: 100.0%
Identity: 20%
PDB header:immune system, membrane protein
Chain: A: PDB Molecule:complement component c8 alpha chain;
PDBTitle: structure of c8a-macpf reveals mechanism of membrane attack2 in complement immune defense

Phyre2

PDB 2rd7 chain A

3D model

Region: 33 - 341
Aligned: 291
Modelled: 308
Confidence: 100.0%
Identity: 20%
PDB header:immune system
Chain: A: PDB Molecule:complement component c8 alpha chain;
PDBTitle: human complement membrane attack proteins share a common2 fold with bacterial cytolysins

Phyre2

PDB 3nsj chain A

3D model

Region: 33 - 425
Aligned: 350
Modelled: 365
Confidence: 100.0%
Identity: 21%
PDB header:immune system
Chain: A: PDB Molecule:perforin-1;
PDBTitle: the x-ray crystal structure of lymphocyte perforin

Phyre2

PDB 2qp2 chain A

3D model

Region: 34 - 341
Aligned: 275
Modelled: 294
Confidence: 99.9%
Identity: 15%
PDB header:unknown function
Chain: A: PDB Molecule:unknown protein;
PDBTitle: structure of a macpf/perforin-like protein

Phyre2

PDB 3kk7 chain B

3D model

Region: 74 - 317
Aligned: 218
Modelled: 230
Confidence: 99.2%
Identity: 18%
PDB header:cell invasion
Chain: B: PDB Molecule:putative cell invasion protein with mac/perforin domain;
PDBTitle: crystal structure of putative cell invasion protein with mac/perforin2 domain (np_812351.1) from bacteriodes thetaiotaomicron vpi-5482 at3 2.46 a resolution

Phyre2

PDB 3ojy chain A

3D model

Region: 142 - 415
Aligned: 234
Modelled: 257
Confidence: 96.4%
Identity: 21%
PDB header:immune system
Chain: A: PDB Molecule:complement component c8 alpha chain;
PDBTitle: crystal structure of human complement component c8

Phyre2

PDB 3t5o chain A

3D model

Region: 46 - 415
Aligned: 328
Modelled: 356
Confidence: 86.4%
Identity: 18%
PDB header:immune system
Chain: A: PDB Molecule:complement component c6;
PDBTitle: crystal structure of human complement component c6

Phyre2

PDB 2m20 chain B

3D model

Region: 654 - 706
Aligned: 53
Modelled: 53
Confidence: 72.1%
Identity: 19%
PDB header:signaling protein
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: egfr transmembrane - juxtamembrane (tm-jm) segment in bicelles: md2 guided nmr refined structure.

Phyre2

PDB 2knc chain B

3D model

Region: 644 - 691
Aligned: 48
Modelled: 48
Confidence: 64.2%
Identity: 19%
PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex

Phyre2

PDB 3ojy chain B

3D model

Region: 133 - 342
Aligned: 192
Modelled: 210
Confidence: 54.6%
Identity: 15%
PDB header:immune system
Chain: B: PDB Molecule:complement component c8 beta chain;
PDBTitle: crystal structure of human complement component c8

Phyre2

PDB 2kr1 chain A

3D model

Region: 332 - 357
Aligned: 25
Modelled: 26
Confidence: 33.4%
Identity: 28%
PDB header:ligase
Chain: A: PDB Molecule:ubiquitin protein ligase e3a;
PDBTitle: solution nmr structure of zinc binding n-terminal domain of ubiquitin-2 protein ligase e3a from homo sapiens. northeast structural genomics3 consortium (nesg) target hr3662

Phyre2

PDB 2knc chain A

3D model

Region: 652 - 691
Aligned: 40
Modelled: 40
Confidence: 32.6%
Identity: 18%
PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex

Phyre2

PDB 1ihm chain C

3D model

Region: 558 - 615
Aligned: 57
Modelled: 58
Confidence: 27.0%
Identity: 18%
PDB header:virus
Chain: C: PDB Molecule:capsid protein;
PDBTitle: crystal structure analysis of norwalk virus capsid

Phyre2

PDB 1ihm chain A

3D model

Region: 558 - 615
Aligned: 57
Modelled: 58
Confidence: 27.0%
Identity: 18%
Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily: Positive stranded ssRNA viruses
Family: Caliciviridae-like VP

Phyre2

PDB 3flo chain D

3D model

Region: 323 - 369
Aligned: 45
Modelled: 47
Confidence: 23.8%
Identity: 16%
PDB header:transferase
Chain: D: PDB Molecule:dna polymerase alpha catalytic subunit a;
PDBTitle: crystal structure of the carboxyl-terminal domain of yeast dna2 polymerase alpha in complex with its b subunit

Phyre2

PDB 2k9y chain B

3D model

Region: 653 - 679
Aligned: 27
Modelled: 27
Confidence: 23.8%
Identity: 19%
PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0

Phyre2

PDB 2k9y chain A

3D model

Region: 653 - 679
Aligned: 27
Modelled: 27
Confidence: 23.8%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0

Phyre2

PDB 1ady chain A

3D model

Region: 249 - 348
Aligned: 93
Modelled: 100
Confidence: 22.6%
Identity: 16%
PDB header:trna synthetase
Chain: A: PDB Molecule:histidyl-trna synthetase;
PDBTitle: histidyl-trna synthetase in complex with histidyl-adenylate

Phyre2

PDB 2qbx chain B

3D model

Region: 47 - 77
Aligned: 31
Modelled: 31
Confidence: 21.2%
Identity: 29%
PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-b receptor 2;
PDBTitle: ephb2/snew antagonistic peptide complex

Phyre2

PDB 2ks1 chain B

3D model

Region: 647 - 679
Aligned: 33
Modelled: 33
Confidence: 20.5%
Identity: 21%
PDB header:transferase
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation

Phyre2
1
c2qqhA_
2
c2rd7A_
3
c3nsjA_
4
c2qp2A_
5
c3kk7B_
6
c3ojyA_
7
c3t5oA_
8
c2m20B_
9
c2kncB_
10
c3ojyB_
11
c2kr1A_
12
c2kncA_
13
c1ihmC_
14
d1ihma_
15
c3floD_
16
c2k9yB_
17
c2k9yA_
18
c1adyA_
19
c2qbxB_
20
c2ks1B_
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
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46
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54
55
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57
58
59
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61
62
63
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69
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73
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2qqhA_
100.0 20 PDB header:immune system, membrane protein
Chain: A: PDB Molecule:complement component c8 alpha chain;
PDBTitle: structure of c8a-macpf reveals mechanism of membrane attack2 in complement immune defense
2c2rd7A_
100.0 20 PDB header:immune system
Chain: A: PDB Molecule:complement component c8 alpha chain;
PDBTitle: human complement membrane attack proteins share a common2 fold with bacterial cytolysins
3c3nsjA_
100.0 21 PDB header:immune system
Chain: A: PDB Molecule:perforin-1;
PDBTitle: the x-ray crystal structure of lymphocyte perforin
4c2qp2A_
99.9 15 PDB header:unknown function
Chain: A: PDB Molecule:unknown protein;
PDBTitle: structure of a macpf/perforin-like protein
5c3kk7B_
99.2 18 PDB header:cell invasion
Chain: B: PDB Molecule:putative cell invasion protein with mac/perforin domain;
PDBTitle: crystal structure of putative cell invasion protein with mac/perforin2 domain (np_812351.1) from bacteriodes thetaiotaomicron vpi-5482 at3 2.46 a resolution
6c3ojyA_
96.4 21 PDB header:immune system
Chain: A: PDB Molecule:complement component c8 alpha chain;
PDBTitle: crystal structure of human complement component c8
7c3t5oA_
86.4 18 PDB header:immune system
Chain: A: PDB Molecule:complement component c6;
PDBTitle: crystal structure of human complement component c6
8c2m20B_
72.1 19 PDB header:signaling protein
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: egfr transmembrane - juxtamembrane (tm-jm) segment in bicelles: md2 guided nmr refined structure.
9c2kncB_
64.2 19 PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
10c3ojyB_
54.6 15 PDB header:immune system
Chain: B: PDB Molecule:complement component c8 beta chain;
PDBTitle: crystal structure of human complement component c8
11c2kr1A_
33.4 28 PDB header:ligase
Chain: A: PDB Molecule:ubiquitin protein ligase e3a;
PDBTitle: solution nmr structure of zinc binding n-terminal domain of ubiquitin-2 protein ligase e3a from homo sapiens. northeast structural genomics3 consortium (nesg) target hr3662
12c2kncA_
32.6 18 PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
13c1ihmC_
27.0 18 PDB header:virus
Chain: C: PDB Molecule:capsid protein;
PDBTitle: crystal structure analysis of norwalk virus capsid
14d1ihma_
27.0 18 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Caliciviridae-like VP
15c3floD_
23.8 16 PDB header:transferase
Chain: D: PDB Molecule:dna polymerase alpha catalytic subunit a;
PDBTitle: crystal structure of the carboxyl-terminal domain of yeast dna2 polymerase alpha in complex with its b subunit
16c2k9yB_
23.8 19 PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
17c2k9yA_
23.8 19 PDB header:transferase
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
18c1adyA_
22.6 16 PDB header:trna synthetase
Chain: A: PDB Molecule:histidyl-trna synthetase;
PDBTitle: histidyl-trna synthetase in complex with histidyl-adenylate
19c2qbxB_
21.2 29 PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-b receptor 2;
PDBTitle: ephb2/snew antagonistic peptide complex
20c2ks1B_
20.5 21 PDB header:transferase
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
21c2dk6A_
not modelled 18.6 20 PDB header:signaling protein
Chain: A: PDB Molecule:parp11 protein;
PDBTitle: solution structure of wwe domain in poly (adp-ribose)2 polymerase family, member 11 (parp 11)
22c2auhB_
not modelled 17.8 55 PDB header:transferase/signaling protein
Chain: B: PDB Molecule:growth factor receptor-bound protein 14;
PDBTitle: crystal structure of the grb14 bps region in complex with2 the insulin receptor tyrosine kinase
23d2g38b1
not modelled 16.8 36 Fold:Ferritin-like
Superfamily:PE/PPE dimer-like
Family:PPE
24c2g38B_
not modelled 16.8 36 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:ppe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis
25c3p1iC_
not modelled 16.2 29 PDB header:transferase,signaling protein
Chain: C: PDB Molecule:ephrin type-b receptor 3;
PDBTitle: ligand binding domain of human ephrin type-b receptor 3
26c3o14B_
not modelled 16.1 14 PDB header:gene regulation
Chain: B: PDB Molecule:anti-ecfsigma factor, chrr;
PDBTitle: crystal structure of an anti-ecfsigma factor, chrr (maqu_0586) from2 marinobacter aquaeolei vt8 at 1.70 a resolution
27c3gr0D_
not modelled 15.9 13 PDB header:membrane protein
Chain: D: PDB Molecule:protein prgh;
PDBTitle: periplasmic domain of the t3ss inner membrane protein prgh from2 s.typhimurium (fragment 170-362)
28c3dkbA_
not modelled 15.7 43 PDB header:hydrolase
Chain: A: PDB Molecule:tumor necrosis factor, alpha-induced protein 3;
PDBTitle: crystal structure of a20, 2.5 angstrom
29c2cpbA_
not modelled 15.4 31 PDB header:viral protein
Chain: A: PDB Molecule:m13 major coat protein;
PDBTitle: solution nmr structures of the major coat protein of2 filamentous bacteriophage m13 solubilized in3 dodecylphosphocholine micelles, 25 lowest energy structures
30c2l2tA_
not modelled 15.4 41 PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4;
PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain
31c2lcxB_
not modelled 15.4 41 PDB header:transferase
Chain: B: PDB Molecule:receptor tyrosine-protein kinase erbb-4;
PDBTitle: spatial structure of the erbb4 dimeric tm domain
32c2nyuA_
not modelled 15.3 21 PDB header:transferase
Chain: A: PDB Molecule:putative ribosomal rna methyltransferase 2;
PDBTitle: crystal structure of human ftsj homolog 2 (e.coli) protein2 in complex with s-adenosylmethionine
33d1w7ja1
not modelled 15.3 45 Fold:SH3-like barrel
Superfamily:Myosin S1 fragment, N-terminal domain
Family:Myosin S1 fragment, N-terminal domain
34c2kr0A_
not modelled 15.1 17 PDB header:protein binding
Chain: A: PDB Molecule:proteasomal ubiquitin receptor adrm1;
PDBTitle: a proteasome protein
35c2ko5A_
not modelled 14.7 18 PDB header:transcription
Chain: A: PDB Molecule:ring finger protein z;
PDBTitle: nmr solution structure of lfv-z
36c3gr1A_
not modelled 14.2 13 PDB header:membrane protein
Chain: A: PDB Molecule:protein prgh;
PDBTitle: periplamic domain of the t3ss inner membrane protein prgh2 from s.typhimurium (fragment 170-392)
37d1rp4a_
not modelled 13.7 17 Fold:ERO1-like
Superfamily:ERO1-like
Family:ERO1-like
38d1v5ra1
not modelled 13.6 42 Fold:N domain of copper amine oxidase-like
Superfamily:GAS2 domain-like
Family:GAS2 domain
39c2lohA_
not modelled 13.6 19 PDB header:neuropeptide
Chain: A: PDB Molecule:p3(42);
PDBTitle: dimeric structure of transmembrane domain of amyloid precursor protein2 in micellar environment
40d1c3ab_
not modelled 13.5 23 Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:C-type lectin domain
41c3h3iA_
not modelled 13.1 22 PDB header:lipid binding protein
Chain: A: PDB Molecule:putative lipid binding protein;
PDBTitle: crystal structure of a putative lipid binding protein (bt_2261) from2 bacteroides thetaiotaomicron vpi-5482 at 2.20 a resolution
42c2l8sA_
not modelled 13.0 11 PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-1;
PDBTitle: solution nmr structure of transmembrane and cytosolic regions of2 integrin alpha1 in detergent micelles
43d1v7pa_
not modelled 12.6 36 Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:C-type lectin domain
44c4bq7D_
not modelled 11.6 40 PDB header:cell adhesion
Chain: D: PDB Molecule:rgm domain family member b;
PDBTitle: crystal structure of the rgmb-neo1 complex form 2
45c1ifpA_
not modelled 11.6 20 PDB header:virus
Chain: A: PDB Molecule:major coat protein assembly;
PDBTitle: inovirus (filamentous bacteriophage) strain pf3 major coat2 protein assembly
46c3douA_
not modelled 11.1 50 PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase j;
PDBTitle: crystal structure of methyltransferase involved in cell2 division from thermoplasma volcanicum gss1
47c3m8lA_
not modelled 10.9 19 PDB header:virus
Chain: A: PDB Molecule:capsid protein;
PDBTitle: crystal structure analysis of the feline calicivirus capsid protein
48c1kg1A_
not modelled 10.8 33 PDB header:toxin
Chain: A: PDB Molecule:necrosis inducing protein 1;
PDBTitle: nmr structure of the nip1 elicitor protein from2 rhynchosporium secalis
49d1kg1a_
not modelled 10.8 33 Fold:Necrosis inducing protein 1, NIP1
Superfamily:Necrosis inducing protein 1, NIP1
Family:Necrosis inducing protein 1, NIP1
50d1k1xa1
not modelled 10.6 38 Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Families 57/38 glycoside transferase middle domain
Family:4-alpha-glucanotransferase, domain 2
51c2kpeB_
not modelled 10.5 35 PDB header:membrane protein
Chain: B: PDB Molecule:glycophorin-a;
PDBTitle: refined structure of glycophorin a transmembrane segment dimer in dpc2 micelles
52c2kpeA_
not modelled 10.5 35 PDB header:membrane protein
Chain: A: PDB Molecule:glycophorin-a;
PDBTitle: refined structure of glycophorin a transmembrane segment dimer in dpc2 micelles
53c1afoB_
not modelled 10.2 31 PDB header:integral membrane protein
Chain: B: PDB Molecule:glycophorin a;
PDBTitle: dimeric transmembrane domain of human glycophorin a, nmr,2 20 structures
54c2xrfA_
not modelled 10.2 22 PDB header:transferase
Chain: A: PDB Molecule:uridine phosphorylase 2;
PDBTitle: crystal structure of human uridine phosphorylase 2
55c1h3tB_
not modelled 10.1 17 PDB header:immune system
Chain: B: PDB Molecule:ig gamma-1 chain c region;
PDBTitle: crystal structure of the human igg1 fc-fragment,glycoform2 (mn2f)2
56c4a18P_
not modelled 9.8 23 PDB header:ribosome
Chain: P: PDB Molecule:rpl38;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of molecule 1
57c3k44D_
not modelled 9.7 33 PDB header:nucleic acid binding protein
Chain: D: PDB Molecule:purine-rich binding protein-alpha, isoform b;
PDBTitle: crystal structure of drosophila melanogaster pur-alpha
58d1hdla_
not modelled 9.7 16 Fold:Kazal-type serine protease inhibitors
Superfamily:Kazal-type serine protease inhibitors
Family:Serine proteinase inhibitor lekti
59c2e2wA_
not modelled 9.6 33 PDB header:ligase
Chain: A: PDB Molecule:dna ligase 4;
PDBTitle: solution structure of the first brct domain of human dna2 ligase iv
60c4g84B_
not modelled 9.6 19 PDB header:ligase
Chain: B: PDB Molecule:histidine--trna ligase, cytoplasmic;
PDBTitle: crystal structure of human hisrs
61c3mkuA_
not modelled 9.6 22 PDB header:transport protein
Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug
PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter
62c4esnB_
not modelled 9.4 19 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a hypothetical protein (rumgna_02503) from2 ruminococcus gnavus atcc 29149 at 2.20 a resolution
63d3bdwa1
not modelled 9.3 21 Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:C-type lectin domain
64c4a53A_
not modelled 9.2 50 PDB header:rna binding protein
Chain: A: PDB Molecule:edc3;
PDBTitle: structural basis of the dcp1:dcp2 mrna decapping complex activation2 by edc3 and scd6
65c4djiA_
not modelled 9.2 6 PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
66c4iopB_
not modelled 9.1 14 PDB header:immune system
Chain: B: PDB Molecule:killer cell lectin-like receptor subfamily f member 2;
PDBTitle: crystal structure of nkp65 bound to its ligand kacl
67c3m9zA_
not modelled 9.0 17 PDB header:signaling protein
Chain: A: PDB Molecule:killer cell lectin-like receptor subfamily b member 1a;
PDBTitle: crystal structure of extracellular domain of mouse nkr-p1a
68c3zrhA_
not modelled 9.0 27 PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin thioesterase zranb1;
PDBTitle: crystal structure of the lys29, lys33-linkage-specific trabid otu2 deubiquitinase domain reveals an ankyrin-repeat ubiquitin binding3 domain (ankubd)
69d1pfoa_
not modelled 9.0 10 Fold:Perfringolysin
Superfamily:Perfringolysin
Family:Perfringolysin
70c1pfoA_
not modelled 9.0 10 PDB header:toxin
Chain: A: PDB Molecule:perfringolysin o;
PDBTitle: perfringolysin o
71d1c3aa_
not modelled 9.0 60 Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:C-type lectin domain
72c2k5jB_
not modelled 9.0 17 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
73c2k1aA_
not modelled 8.9 17 PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment
74d2rgfa_
not modelled 8.9 22 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD
75c3a9lB_
not modelled 8.7 16 PDB header:hydrolase
Chain: B: PDB Molecule:poly-gamma-glutamate hydrolase;
PDBTitle: structure of bacteriophage poly-gamma-glutamate hydrolase
76c3zf7p_
not modelled 8.7 14 PDB header:ribosome
Chain: P: PDB Molecule:probable 60s ribosomal protein l14;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
77d2zkmx4
not modelled 8.7 20 Fold:TIM beta/alpha-barrel
Superfamily:PLC-like phosphodiesterases
Family:Mammalian PLC
78c1b5fC_
not modelled 8.6 16 PDB header:hydrolase
Chain: C: PDB Molecule:protein (cardosin a);
PDBTitle: native cardosin a from cynara cardunculus l.
79d1dx5i2
not modelled 8.6 29 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:EGF/Laminin
Family:EGF-type module
80d1g5ga1
not modelled 8.5 34 Fold:Head and neck region of the ectodomain of NDV fusion glycoprotein
Superfamily:Head and neck region of the ectodomain of NDV fusion glycoprotein
Family:Head and neck region of the ectodomain of NDV fusion glycoprotein
81c3g6nA_
not modelled 8.3 17 PDB header:hydrolase
Chain: A: PDB Molecule:peptide deformylase;
PDBTitle: crystal structure of an efpdf complex with met-ala-ser
82c3pilA_
not modelled 8.3 35 PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase;
PDBTitle: crystal structure of mxr1 from saccharomyces cerevisiae in reduced2 form
83c1ciiA_
not modelled 8.2 7 PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
84c3bzjA_
not modelled 8.2 13 PDB header:hydrolase
Chain: A: PDB Molecule:uv endonuclease;
PDBTitle: uvde k229l
85c2kppA_
not modelled 8.2 26 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin0431 protein;
PDBTitle: solution nmr structure of lin0431 protein from listeria innocua.2 northeast structural genomics consortium target lkr112
86c3ry6A_
not modelled 8.2 21 PDB header:immune system
Chain: A: PDB Molecule:ig gamma-1 chain c region;
PDBTitle: complex of fcgammariia (cd32) and the fc of human igg1
87c3ry6B_
not modelled 8.2 21 PDB header:immune system
Chain: B: PDB Molecule:ig gamma-1 chain c region;
PDBTitle: complex of fcgammariia (cd32) and the fc of human igg1
88d1e88a3
not modelled 8.1 21 Fold:FnI-like domain
Superfamily:FnI-like domain
Family:Fibronectin type I module
89c2k5lA_
not modelled 8.0 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:feoa;
PDBTitle: solution nmr structure of protein feoa from clostridium2 thermocellum, northeast structural genomics consortium3 target cmr17
90d1kshb_
not modelled 8.0 19 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:RhoGDI-like
91d1xdna_
not modelled 8.0 22 Fold:ATP-grasp
Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain
Family:RNA ligase
92d1jv2a2
not modelled 7.9 22 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Integrin domains
Family:Integrin domains
93c1no7A_
not modelled 7.9 15 PDB header:viral protein
Chain: A: PDB Molecule:major capsid protein;
PDBTitle: structure of the large protease resistant upper domain of2 vp5, the major capsid protein of herpes simplex virus-1
94d1no7a_
not modelled 7.9 15 Fold:Major capsid protein VP5
Superfamily:Major capsid protein VP5
Family:Major capsid protein VP5
95c1oqzB_
not modelled 7.9 12 PDB header:hydrolase
Chain: B: PDB Molecule:glutaryl acylase;
PDBTitle: crystal structures of glutaryl 7-aminocephalosporanic acid acylase:2 insight into autoproteolytic activation
96d1hica_
not modelled 7.9 69 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Leech antihemostatic proteins
Family:Hirudin-like
97d1shwb_
not modelled 7.9 29 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Ephrin receptor ligand binding domain
98c1rh5C_
not modelled 7.7 39 PDB header:protein transport
Chain: C: PDB Molecule:secbeta;
PDBTitle: the structure of a protein conducting channel
99d1rh5c_
not modelled 7.7 39 Fold:Single transmembrane helix
Superfamily:Sec-beta subunit
Family:Sec-beta subunit

Binding site prediction 

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