24/07/2013 00:46:06 : INFO  : Run start: Wed Jul 24 00:46:06 BST 2013
24/07/2013 00:46:06 : INFO  : Initialised job
24/07/2013 00:46:06 : INFO  : Initialised job:
Sequence
>batch____
MNSFMALVLIWMIIACAEADKPLGETGTTGFQICKNALKLPVLEVLPGGGWDNLRNVDMG
RVMDLTYTNCKTTEDGQYIIPDEVYTIPQKESNLEMNSEVLESWMNYQSTTSLSINTELA
LFSRVNGKFSTEFQRMKTLQVKDQAVTTRVQVRNRIYTVKTTPTSELSLGFTKALMDICD
QLEKNQTKMATYLAELLILNYGTHVITSVDAGAALVQEDHVRSSFLLDNQNSQNTVTASA
GIAFLNIVNFKVETDYISQTSLTKDYLSNRTNSRVQSFGGVPFYPGITLETWQKGITNHL
VAIDRAGLPLHFFIKPDKLPGLPGPLVKKLSKTVETAVRHYYTFNTHPGCTNVDSPNFNF
QANMDDDSCDAKVTNFTFGGVYQECTELSGDVLCQNLEQKNLLTGDFSCPPGYSPVHLLS
QTHEEGYSRLECKKKCTLKIFCKTVCEDVFRVAKAEFRAYWCVAAGQVPDNSGLLFGGVF
TDKTINPMTNAQSCPAGYIPLNLFESLKVCVSLDYELGFKFSVPFGGFFSCIMGNPLVNS
DTAKDVRAPSLKKCPGGFSQHLAVISDGCQVSYCVKAGIFTGGSLLPVRLPPYTKPPLMS
QVATNTVIVTNSETARSWIKDPQTNQWKLGEPLELRRAMTVIHGDSNGMSGGEAAGITLG
VTIALGIVITLAIYGTRKYKKKEYQEIEEQESLVGSLATDATVLNGEEDPSPA

24/07/2013 00:46:06 : INFO  : Checked sequence
24/07/2013 00:46:07 : INFO  : Finding homologues with PSI-BLAST
24/07/2013 00:46:07 : INFO  : PSI-BLAST 3 iterations
24/07/2013 00:48:48 : INFO  : PSI-BLAST 5 iterations
24/07/2013 00:51:17 : INFO  : Finished PSI-BLAST
24/07/2013 00:51:17 : INFO  : Running Buildali to generate a3m file
24/07/2013 00:55:10 : INFO  : Converting to HMM
24/07/2013 00:55:10 : INFO  : Calibrating HMM
24/07/2013 00:55:24 : INFO  : Searching HMM database
24/07/2013 01:09:42 : INFO  : Finished buildali
24/07/2013 01:09:43 : INFO  : Predicting secondary structure
24/07/2013 01:09:43 : INFO  : Predicted secondary structure (PSI-Pred)
24/07/2013 01:09:43 : INFO  : Predicting Disordered regions
24/07/2013 01:09:43 : INFO  : Predicted Disorder (Disopred)
24/07/2013 01:09:44 : INFO  : Running memsat_svm check
24/07/2013 01:16:04 : INFO  : Running memsat_svm full
24/07/2013 01:18:11 : INFO  : Predicted Transmembrane (memsat_svm) ID 'e8d85519151ae0a4'
24/07/2013 01:18:11 : INFO  : Initialising fold library search
24/07/2013 01:18:11 : INFO  : Initialised search input
24/07/2013 01:18:11 : INFO  : Building Ensemble models
24/07/2013 01:18:11 : INFO  : Building hh.c2qqhA_.model.1.pdb
24/07/2013 01:18:12 : INFO  : Building hh.c2rd7A_.model.2.pdb
24/07/2013 01:18:13 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/e8d85519151ae0a4/hh.c2rd7A_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/e8d85519151ae0a4/c2rd7A_.2.pdb
24/07/2013 01:18:13 : INFO  : Building hh.c3nsjA_.model.3.pdb
24/07/2013 01:18:14 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/e8d85519151ae0a4/hh.c3nsjA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/e8d85519151ae0a4/c3nsjA_.3.pdb
24/07/2013 01:18:14 : INFO  : Building hh.c2m20B_.model.4.pdb
24/07/2013 01:18:15 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/e8d85519151ae0a4/hh.c2m20B_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/e8d85519151ae0a4/c2m20B_.8.pdb
24/07/2013 01:18:15 : INFO  : Building hh.c2kncB_.model.5.pdb
24/07/2013 01:18:15 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/e8d85519151ae0a4/hh.c2kncB_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/e8d85519151ae0a4/c2kncB_.9.pdb
24/07/2013 01:18:16 : INFO  : Building c2qqhA_.1.pdb
24/07/2013 01:18:16 : INFO  : Building c2rd7A_.2.pdb
24/07/2013 01:18:18 : INFO  : Building c3nsjA_.3.pdb
24/07/2013 01:18:19 : INFO  : Building c2qp2A_.4.pdb
24/07/2013 01:18:20 : INFO  : Building c3kk7B_.5.pdb
24/07/2013 01:18:21 : INFO  : Building c3ojyA_.6.pdb
24/07/2013 01:18:22 : INFO  : Building c3t5oA_.7.pdb
24/07/2013 01:18:23 : INFO  : Building c2m20B_.8.pdb
24/07/2013 01:18:23 : INFO  : Building c2kncB_.9.pdb
24/07/2013 01:18:24 : INFO  : Building c3ojyB_.10.pdb
24/07/2013 01:18:25 : INFO  : Building c2kr1A_.11.pdb
24/07/2013 01:18:26 : INFO  : Building c2kncA_.12.pdb
24/07/2013 01:18:27 : INFO  : Building c1ihmC_.13.pdb
24/07/2013 01:18:28 : INFO  : Building d1ihma_.14.pdb
24/07/2013 01:18:29 : INFO  : Building c3floD_.15.pdb
24/07/2013 01:18:30 : INFO  : Building c2k9yB_.16.pdb
24/07/2013 01:18:31 : INFO  : Building c2k9yA_.17.pdb
24/07/2013 01:18:31 : INFO  : Building c1adyA_.18.pdb
24/07/2013 01:18:32 : INFO  : Building c2qbxB_.19.pdb
24/07/2013 01:18:33 : INFO  : Building c2ks1B_.20.pdb
24/07/2013 01:18:44 : INFO  : Finished HH model building
24/07/2013 01:18:44 : WARN  : Set python to /bmm/www/servers/phyre2/bin//python2.7/2.7.2/bin/python2.7
24/07/2013 01:18:54 : INFO  : html domain output complete ID 'e8d85519151ae0a4'
24/07/2013 02:21:41 : INFO  : Run end  : Wed Jul 24 02:21:41 BST 2013
