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Job DescriptionA1L314
Confidence96.36%DateWed Jul 10 14:33:54 BST 2013
Rank6Aligned Residues234
% Identity21%Templatec3ojyA_
PDB info PDB header:immune systemChain: A: PDB Molecule:complement component c8 alpha chain; PDBTitle: crystal structure of human complement component c8
Resolution2.51 Å
Model Dimensions (Å)X:74.669 Y:66.312 Z:33.962

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   142.......150.........160. ........170.........180.........190.........200
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Query Sequence  KDQAVTTRVQVRNRIYTVKT. TPTSELSLGFTKALMDICDQLEKNQTKMATYLAELLILN
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Template Sequence  EKKFIFTRIFTKVQTAHFKMRKDDIMLDEGMLQSLMELPDQY. . NYGMYAKF. . . . . IND
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   254.....260.........270.........280.........290..... ....300... ...
 
   201........210.........220.........230.........240.........250.........260
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Query Sequence  YGTHVITSVDAGAALVQEDHVRSSFLLDNQNSQNTVTASAGIAFLNIVNFKVETDYISQT
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Template Sequence  YGTHYITSGSMGGIYEYILVIDKAKMESLGITSRDITTCFGGSLGI. . . QYHCKKFGGGK
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STT

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   307..310.........320.........330.........340.........350.. .......360...
 
   261........270.........280..... ....290.........300.........310.........
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Query Sequence  SLTKDYLSNRTNSRVQSFGGVPFYP. GITLETWQKGITNHLVAIDRAGLPLHFFIKPDKL
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Template Sequence  TERARKAMAVEDIISRVRGG. . . SRSTITYRSWGRSLKYNPVVIDFEMQPIHEVLRHTSL
Template Known Secondary structure  STT

BS
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GGGS
GGGGGGGBTT
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   377..380.........390...... ...400.........410.........420.........430...
 
   320.........330.........340.........350.........360.........370.........
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Query Sequence  PGLPGPLVKKLSKTVETAVRHYYTFNTHPGCTNVDSPNFNFQANMDDDSCDAKVTNFTFG
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Template Sequence  . . . . . GPLEAKRQNLRRALDQYLM. . EFNACRCGPCFN. NGVPILEGTSC. . . . . . . . . .
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   444.....450.........460.. .......470.... .....480.....
 
   380.........390 .........400.........410.....
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Query Sequence  GVYQECTELSG. . DVLCQNLEQKNLLTGDFSCPPGYSP
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Template Sequence  . . . . RCQCRLGSLGAACE. . . . . AKADGSWSCWSSWSV
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   486...490......... 500.........510....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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