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Job DescriptionA1L314
Confidence100.00%DateWed Jul 10 14:33:54 BST 2013
Rank3Aligned Residues350
% Identity21%Templatec3nsjA_
PDB info PDB header:immune systemChain: A: PDB Molecule:perforin-1; PDBTitle: the x-ray crystal structure of lymphocyte perforin
Resolution2.75 Å
Model Dimensions (Å)X:89.848 Y:66.357 Z:65.128

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   33...... 40.........50.........60. ...... ..70.. .......80
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Query Sequence  ICKNALK. LPVLEVLPGGGWDNLRNVDMGR. VMDLTY. . TNCKT. . . . . . . . TEDGQYII
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Template Sequence  ECKQKHKFVPGVW. MAGEGMDVTTLRRSGSFPVNTQRFLRPDRTCTLCKNSLMRDATQRL
Template Known Secondary structure  S


B
TTGG.GTT
TTTT
S

SB




S
TTS
TTTTT
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   2930.........40. ........50.........60.........70.........80.......
 
   81...... ..90.........100.........110........ .120.......
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Query Sequence  PDEVYTI. . PQKESNLEMNSEVLESWMNYQSTTSLSINTE. . . . . . . . . . . LALFSRVNG
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Template Sequence  PVAITHWRPHSSHCQRNVAAAKVHSTEGVAREAAANINNDWRVGLDVNRPEANMRASVAG
Template Known Secondary structure 
TT

S






STTB
S
TTTTS




STTTT
B
TT
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   88.90.........100.........110.........120.........130.........140.......
 
   128.130.........140.........150.........160.........170.........180.......
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Query Sequence  KFSTEFQRMKTLQVKDQAVTTRVQVRNRIYTVKTTPTSELSLGFTKALMDICDQLEKNQT
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Template Sequence  SHSKVANFAAEKTYQDQYNFNSDTVECRMYSFRLVQKPPLHLDFKKALRALPRNF. . NSS
Template Known Secondary structure  TTSS

SS

B
TS
SS
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   149150.........160.........170.........180.........190.........200... ...
 
   188.190.........200.........210.........220.........230..... ....240...
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Query Sequence  KMATYLAELLILNYGTHVITSVDAGAALVQEDHVRSSFLLDNQNSQNT. . . . VTASAGIA
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Template Sequence  TEHAYHE. . LISSYGTHFITAVDLGGRISVLTALRTCQLTLNGLTADEVGDCLNVEAQVS
Template Known Secondary structure  T..
STT

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   207..210... ......220.........230.........240.........250.........260....
 
   244.....250.........260..... ....270.........280..... .. ..
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Query Sequence  FLNIVNFKVETDYISQTSLTKD. . . . YLSNRTNSRVQSFGGVPFYP. GI. . . . . . . . . TL
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Template Sequence  IGAQASVSSEYKACEEKKKQHKMATSFHQTYRERHVEVLGGPLDSTHDLLFGNQATPEQF
Template Known Secondary structure  TSS
S
STT
SS



SS
GGG


SSS
SS

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   265....270.........280.........290.........300.........310.........320....
 
   290.........300.........310.........320.........330.........340.........
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Query Sequence  ETWQKGITNHLVAIDRAGLPLHFFIKPDKLPGLPGPLVKKLSKTVETAVRHYYTFNTHPG
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Template Sequence  STWTASLPSNPGLVDYSLEPLHTLLEEQNP. . . . . . . . . . KREALRQAISHYIMSRARW.
Template Known Secondary structure  TTTS
GGGGS
TT
T..........T
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   325....330.........340.........350.... .....360.........370...
 
   350.. .......360.........370.........380.........390.........400........
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Query Sequence  CTN. VDSPNFNFQANMDDDSCDAKVTNFTFGGVYQECTELSGDVLCQNLEQKNLLTGDFS
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Template Sequence  QNCSRPCRS. GQHK. SSHDSC. . . . . . . . . . . . . . QCECQ. . . . . . . . . . . DSKVTNQDC
Template Known Secondary structure 

TTS

BT.T.
SS
TT..............
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TTTB
GGG
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   374.....380.. .... ...390.. ..... ..400......
 
   409410.........420.....
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Query Sequence  CPPGYSPVHLLSQTHEE
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Template Sequence  CPRQRGLAHLVVSNFRA
Template Known Secondary structure 
BSSTT
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   407..410.........420...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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