Phyre 2 alignment of A1L314 with d1g5ga1

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Job Description | A1L314
Confidence | 8.53% | Date | Wed Jul 10 14:33:54 BST 2013
Rank | 80 | Aligned Residues | 29
% Identity | 34% | Template | d1g5ga1
SCOP info | Head and neck region of the ectodomain of NDV fusion glycoprotein | Head and neck region of the ectodomain of NDV fusion glycoprotein | Head and neck region of the ectodomain of NDV fusion glycoprotein
Resolution | 3.30

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . |  |  |  | . | . | . | 530 | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | C | V | S | L | D | Y | E | L | G | F | K | F | S | V | P | F | G | . | . | . | G | F | F | S | C | I | M | G | N | P | L | V
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | C | I | E | T | D | L | D | L | Y | C | T | R | I | V | T | F | P | M | S | P | G | I | Y | S | C | L | S | G | N | T | S | A
Template Known Secondary structure |  |  |  |  |  | S | S |  |  |  |  | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |  | S | T | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 338 | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | .

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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