Emaill.a.kelley@imperial.ac.uk
DescriptionA1L314
DateWed Jul 10 14:33:54 BST 2013
Unique Job IDe8d85519151ae0a4

Detailed template information 

#Template Alignment Coverage3D Model Confidence% i.d. Template Information
1c2qqhA_



100.0 20 PDB header:immune system, membrane protein
Chain: A: PDB Molecule:complement component c8 alpha chain;
PDBTitle: structure of c8a-macpf reveals mechanism of membrane attack2 in complement immune defense
2c2rd7A_



100.0 20 PDB header:immune system
Chain: A: PDB Molecule:complement component c8 alpha chain;
PDBTitle: human complement membrane attack proteins share a common2 fold with bacterial cytolysins
3c3nsjA_



100.0 21 PDB header:immune system
Chain: A: PDB Molecule:perforin-1;
PDBTitle: the x-ray crystal structure of lymphocyte perforin
4c2qp2A_



99.9 15 PDB header:unknown function
Chain: A: PDB Molecule:unknown protein;
PDBTitle: structure of a macpf/perforin-like protein
5c3kk7B_



99.2 18 PDB header:cell invasion
Chain: B: PDB Molecule:putative cell invasion protein with mac/perforin domain;
PDBTitle: crystal structure of putative cell invasion protein with mac/perforin2 domain (np_812351.1) from bacteriodes thetaiotaomicron vpi-5482 at3 2.46 a resolution
6c3ojyA_



96.4 21 PDB header:immune system
Chain: A: PDB Molecule:complement component c8 alpha chain;
PDBTitle: crystal structure of human complement component c8
7c3t5oA_



86.4 18 PDB header:immune system
Chain: A: PDB Molecule:complement component c6;
PDBTitle: crystal structure of human complement component c6
8c2m20B_



72.1 19 PDB header:signaling protein
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: egfr transmembrane - juxtamembrane (tm-jm) segment in bicelles: md2 guided nmr refined structure.
9c2kncB_



64.2 19 PDB header:cell adhesion
Chain: B: PDB Molecule:integrin beta-3;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
10c3ojyB_



54.6 15 PDB header:immune system
Chain: B: PDB Molecule:complement component c8 beta chain;
PDBTitle: crystal structure of human complement component c8
11c2kr1A_



33.4 28 PDB header:ligase
Chain: A: PDB Molecule:ubiquitin protein ligase e3a;
PDBTitle: solution nmr structure of zinc binding n-terminal domain of ubiquitin-2 protein ligase e3a from homo sapiens. northeast structural genomics3 consortium (nesg) target hr3662
12c2kncA_



32.6 18 PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
13c1ihmC_



27.0 18 PDB header:virus
Chain: C: PDB Molecule:capsid protein;
PDBTitle: crystal structure analysis of norwalk virus capsid
14d1ihma_



27.0 18 Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily:Positive stranded ssRNA viruses
Family:Caliciviridae-like VP
15c3floD_



23.8 16 PDB header:transferase
Chain: D: PDB Molecule:dna polymerase alpha catalytic subunit a;
PDBTitle: crystal structure of the carboxyl-terminal domain of yeast dna2 polymerase alpha in complex with its b subunit
16c2k9yB_



23.8 19 PDB header:transferase
Chain: B: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
17c2k9yA_



23.8 19 PDB header:transferase
Chain: A: PDB Molecule:ephrin type-a receptor 2;
PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
18c1adyA_



22.6 16 PDB header:trna synthetase
Chain: A: PDB Molecule:histidyl-trna synthetase;
PDBTitle: histidyl-trna synthetase in complex with histidyl-adenylate
19c2qbxB_



21.2 29 PDB header:signaling protein
Chain: B: PDB Molecule:ephrin type-b receptor 2;
PDBTitle: ephb2/snew antagonistic peptide complex
20c2ks1B_



20.5 21 PDB header:transferase
Chain: B: PDB Molecule:epidermal growth factor receptor;
PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
21c2dk6A_



not modelled 18.6 20 PDB header:signaling protein
Chain: A: PDB Molecule:parp11 protein;
PDBTitle: solution structure of wwe domain in poly (adp-ribose)2 polymerase family, member 11 (parp 11)
22c2auhB_



not modelled 17.8 55 PDB header:transferase/signaling protein
Chain: B: PDB Molecule:growth factor receptor-bound protein 14;
PDBTitle: crystal structure of the grb14 bps region in complex with2 the insulin receptor tyrosine kinase
23d2g38b1



not modelled 16.8 36 Fold:Ferritin-like
Superfamily:PE/PPE dimer-like
Family:PPE
24c2g38B_



not modelled 16.8 36 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:ppe family protein;
PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis
25c3p1iC_



not modelled 16.2 29 PDB header:transferase,signaling protein
Chain: C: PDB Molecule:ephrin type-b receptor 3;
PDBTitle: ligand binding domain of human ephrin type-b receptor 3
26c3o14B_



not modelled 16.1 14 PDB header:gene regulation
Chain: B: PDB Molecule:anti-ecfsigma factor, chrr;
PDBTitle: crystal structure of an anti-ecfsigma factor, chrr (maqu_0586) from2 marinobacter aquaeolei vt8 at 1.70 a resolution
27c3gr0D_



not modelled 15.9 13 PDB header:membrane protein
Chain: D: PDB Molecule:protein prgh;
PDBTitle: periplasmic domain of the t3ss inner membrane protein prgh from2 s.typhimurium (fragment 170-362)
28c3dkbA_



not modelled 15.7 43 PDB header:hydrolase
Chain: A: PDB Molecule:tumor necrosis factor, alpha-induced protein 3;
PDBTitle: crystal structure of a20, 2.5 angstrom
29c2cpbA_



not modelled 15.4 31 PDB header:viral protein
Chain: A: PDB Molecule:m13 major coat protein;
PDBTitle: solution nmr structures of the major coat protein of2 filamentous bacteriophage m13 solubilized in3 dodecylphosphocholine micelles, 25 lowest energy structures
30c2l2tA_



not modelled 15.4 41 PDB header:membrane protein
Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4;
PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain
31c2lcxB_



not modelled 15.4 41 PDB header:transferase
Chain: B: PDB Molecule:receptor tyrosine-protein kinase erbb-4;
PDBTitle: spatial structure of the erbb4 dimeric tm domain
32c2nyuA_



not modelled 15.3 21 PDB header:transferase
Chain: A: PDB Molecule:putative ribosomal rna methyltransferase 2;
PDBTitle: crystal structure of human ftsj homolog 2 (e.coli) protein2 in complex with s-adenosylmethionine
33d1w7ja1



not modelled 15.3 45 Fold:SH3-like barrel
Superfamily:Myosin S1 fragment, N-terminal domain
Family:Myosin S1 fragment, N-terminal domain
34c2kr0A_



not modelled 15.1 17 PDB header:protein binding
Chain: A: PDB Molecule:proteasomal ubiquitin receptor adrm1;
PDBTitle: a proteasome protein
35c2ko5A_



not modelled 14.7 18 PDB header:transcription
Chain: A: PDB Molecule:ring finger protein z;
PDBTitle: nmr solution structure of lfv-z
36c3gr1A_



not modelled 14.2 13 PDB header:membrane protein
Chain: A: PDB Molecule:protein prgh;
PDBTitle: periplamic domain of the t3ss inner membrane protein prgh2 from s.typhimurium (fragment 170-392)
37d1rp4a_



not modelled 13.7 17 Fold:ERO1-like
Superfamily:ERO1-like
Family:ERO1-like
38d1v5ra1



not modelled 13.6 42 Fold:N domain of copper amine oxidase-like
Superfamily:GAS2 domain-like
Family:GAS2 domain
39c2lohA_



not modelled 13.6 19 PDB header:neuropeptide
Chain: A: PDB Molecule:p3(42);
PDBTitle: dimeric structure of transmembrane domain of amyloid precursor protein2 in micellar environment
40d1c3ab_



not modelled 13.5 23 Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:C-type lectin domain
41c3h3iA_



not modelled 13.1 22 PDB header:lipid binding protein
Chain: A: PDB Molecule:putative lipid binding protein;
PDBTitle: crystal structure of a putative lipid binding protein (bt_2261) from2 bacteroides thetaiotaomicron vpi-5482 at 2.20 a resolution
42c2l8sA_



not modelled 13.0 11 PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-1;
PDBTitle: solution nmr structure of transmembrane and cytosolic regions of2 integrin alpha1 in detergent micelles
43d1v7pa_



not modelled 12.6 36 Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:C-type lectin domain
44c4bq7D_



not modelled 11.6 40 PDB header:cell adhesion
Chain: D: PDB Molecule:rgm domain family member b;
PDBTitle: crystal structure of the rgmb-neo1 complex form 2
45c1ifpA_



not modelled 11.6 20 PDB header:virus
Chain: A: PDB Molecule:major coat protein assembly;
PDBTitle: inovirus (filamentous bacteriophage) strain pf3 major coat2 protein assembly
46c3douA_



not modelled 11.1 50 PDB header:transferase
Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase j;
PDBTitle: crystal structure of methyltransferase involved in cell2 division from thermoplasma volcanicum gss1
47c3m8lA_



not modelled 10.9 19 PDB header:virus
Chain: A: PDB Molecule:capsid protein;
PDBTitle: crystal structure analysis of the feline calicivirus capsid protein
48c1kg1A_



not modelled 10.8 33 PDB header:toxin
Chain: A: PDB Molecule:necrosis inducing protein 1;
PDBTitle: nmr structure of the nip1 elicitor protein from2 rhynchosporium secalis
49d1kg1a_



not modelled 10.8 33 Fold:Necrosis inducing protein 1, NIP1
Superfamily:Necrosis inducing protein 1, NIP1
Family:Necrosis inducing protein 1, NIP1
50d1k1xa1



not modelled 10.6 38 Fold:immunoglobulin/albumin-binding domain-like
Superfamily:Families 57/38 glycoside transferase middle domain
Family:4-alpha-glucanotransferase, domain 2
51c2kpeB_



not modelled 10.5 35 PDB header:membrane protein
Chain: B: PDB Molecule:glycophorin-a;
PDBTitle: refined structure of glycophorin a transmembrane segment dimer in dpc2 micelles
52c2kpeA_



not modelled 10.5 35 PDB header:membrane protein
Chain: A: PDB Molecule:glycophorin-a;
PDBTitle: refined structure of glycophorin a transmembrane segment dimer in dpc2 micelles
53c1afoB_



not modelled 10.2 31 PDB header:integral membrane protein
Chain: B: PDB Molecule:glycophorin a;
PDBTitle: dimeric transmembrane domain of human glycophorin a, nmr,2 20 structures
54c2xrfA_



not modelled 10.2 22 PDB header:transferase
Chain: A: PDB Molecule:uridine phosphorylase 2;
PDBTitle: crystal structure of human uridine phosphorylase 2
55c1h3tB_



not modelled 10.1 17 PDB header:immune system
Chain: B: PDB Molecule:ig gamma-1 chain c region;
PDBTitle: crystal structure of the human igg1 fc-fragment,glycoform2 (mn2f)2
56c4a18P_



not modelled 9.8 23 PDB header:ribosome
Chain: P: PDB Molecule:rpl38;
PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of molecule 1
57c3k44D_



not modelled 9.7 33 PDB header:nucleic acid binding protein
Chain: D: PDB Molecule:purine-rich binding protein-alpha, isoform b;
PDBTitle: crystal structure of drosophila melanogaster pur-alpha
58d1hdla_



not modelled 9.7 16 Fold:Kazal-type serine protease inhibitors
Superfamily:Kazal-type serine protease inhibitors
Family:Serine proteinase inhibitor lekti
59c2e2wA_



not modelled 9.6 33 PDB header:ligase
Chain: A: PDB Molecule:dna ligase 4;
PDBTitle: solution structure of the first brct domain of human dna2 ligase iv
60c4g84B_



not modelled 9.6 19 PDB header:ligase
Chain: B: PDB Molecule:histidine--trna ligase, cytoplasmic;
PDBTitle: crystal structure of human hisrs
61c3mkuA_



not modelled 9.6 22 PDB header:transport protein
Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug
PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter
62c4esnB_



not modelled 9.4 19 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of a hypothetical protein (rumgna_02503) from2 ruminococcus gnavus atcc 29149 at 2.20 a resolution
63d3bdwa1



not modelled 9.3 21 Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:C-type lectin domain
64c4a53A_



not modelled 9.2 50 PDB header:rna binding protein
Chain: A: PDB Molecule:edc3;
PDBTitle: structural basis of the dcp1:dcp2 mrna decapping complex activation2 by edc3 and scd6
65c4djiA_



not modelled 9.2 6 PDB header:transport protein
Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter;
PDBTitle: structure of glutamate-gaba antiporter gadc
66c4iopB_



not modelled 9.1 14 PDB header:immune system
Chain: B: PDB Molecule:killer cell lectin-like receptor subfamily f member 2;
PDBTitle: crystal structure of nkp65 bound to its ligand kacl
67c3m9zA_



not modelled 9.0 17 PDB header:signaling protein
Chain: A: PDB Molecule:killer cell lectin-like receptor subfamily b member 1a;
PDBTitle: crystal structure of extracellular domain of mouse nkr-p1a
68c3zrhA_



not modelled 9.0 27 PDB header:hydrolase
Chain: A: PDB Molecule:ubiquitin thioesterase zranb1;
PDBTitle: crystal structure of the lys29, lys33-linkage-specific trabid otu2 deubiquitinase domain reveals an ankyrin-repeat ubiquitin binding3 domain (ankubd)
69d1pfoa_



not modelled 9.0 10 Fold:Perfringolysin
Superfamily:Perfringolysin
Family:Perfringolysin
70c1pfoA_



not modelled 9.0 10 PDB header:toxin
Chain: A: PDB Molecule:perfringolysin o;
PDBTitle: perfringolysin o
71d1c3aa_



not modelled 9.0 60 Fold:C-type lectin-like
Superfamily:C-type lectin-like
Family:C-type lectin domain
72c2k5jB_



not modelled 9.0 17 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:uncharacterized protein yiif;
PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
73c2k1aA_



not modelled 8.9 17 PDB header:cell adhesion
Chain: A: PDB Molecule:integrin alpha-iib;
PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment
74d2rgfa_



not modelled 8.9 22 Fold:beta-Grasp (ubiquitin-like)
Superfamily:Ubiquitin-like
Family:Ras-binding domain, RBD
75c3a9lB_



not modelled 8.7 16 PDB header:hydrolase
Chain: B: PDB Molecule:poly-gamma-glutamate hydrolase;
PDBTitle: structure of bacteriophage poly-gamma-glutamate hydrolase
76c3zf7p_



not modelled 8.7 14 PDB header:ribosome
Chain: P: PDB Molecule:probable 60s ribosomal protein l14;
PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
77d2zkmx4



not modelled 8.7 20 Fold:TIM beta/alpha-barrel
Superfamily:PLC-like phosphodiesterases
Family:Mammalian PLC
78c1b5fC_



not modelled 8.6 16 PDB header:hydrolase
Chain: C: PDB Molecule:protein (cardosin a);
PDBTitle: native cardosin a from cynara cardunculus l.
79d1dx5i2



not modelled 8.6 29 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:EGF/Laminin
Family:EGF-type module
80d1g5ga1



not modelled 8.5 34 Fold:Head and neck region of the ectodomain of NDV fusion glycoprotein
Superfamily:Head and neck region of the ectodomain of NDV fusion glycoprotein
Family:Head and neck region of the ectodomain of NDV fusion glycoprotein
81c3g6nA_



not modelled 8.3 17 PDB header:hydrolase
Chain: A: PDB Molecule:peptide deformylase;
PDBTitle: crystal structure of an efpdf complex with met-ala-ser
82c3pilA_



not modelled 8.3 35 PDB header:oxidoreductase
Chain: A: PDB Molecule:peptide methionine sulfoxide reductase;
PDBTitle: crystal structure of mxr1 from saccharomyces cerevisiae in reduced2 form
83c1ciiA_



not modelled 8.2 7 PDB header:transmembrane protein
Chain: A: PDB Molecule:colicin ia;
PDBTitle: colicin ia
84c3bzjA_



not modelled 8.2 13 PDB header:hydrolase
Chain: A: PDB Molecule:uv endonuclease;
PDBTitle: uvde k229l
85c2kppA_



not modelled 8.2 26 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin0431 protein;
PDBTitle: solution nmr structure of lin0431 protein from listeria innocua.2 northeast structural genomics consortium target lkr112
86c3ry6A_



not modelled 8.2 21 PDB header:immune system
Chain: A: PDB Molecule:ig gamma-1 chain c region;
PDBTitle: complex of fcgammariia (cd32) and the fc of human igg1
87c3ry6B_



not modelled 8.2 21 PDB header:immune system
Chain: B: PDB Molecule:ig gamma-1 chain c region;
PDBTitle: complex of fcgammariia (cd32) and the fc of human igg1
88d1e88a3



not modelled 8.1 21 Fold:FnI-like domain
Superfamily:FnI-like domain
Family:Fibronectin type I module
89c2k5lA_



not modelled 8.0 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:feoa;
PDBTitle: solution nmr structure of protein feoa from clostridium2 thermocellum, northeast structural genomics consortium3 target cmr17
90d1kshb_



not modelled 8.0 19 Fold:Immunoglobulin-like beta-sandwich
Superfamily:E set domains
Family:RhoGDI-like
91d1xdna_



not modelled 8.0 22 Fold:ATP-grasp
Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain
Family:RNA ligase
92d1jv2a2



not modelled 7.9 22 Fold:Immunoglobulin-like beta-sandwich
Superfamily:Integrin domains
Family:Integrin domains
93c1no7A_



not modelled 7.9 15 PDB header:viral protein
Chain: A: PDB Molecule:major capsid protein;
PDBTitle: structure of the large protease resistant upper domain of2 vp5, the major capsid protein of herpes simplex virus-1
94d1no7a_



not modelled 7.9 15 Fold:Major capsid protein VP5
Superfamily:Major capsid protein VP5
Family:Major capsid protein VP5
95c1oqzB_



not modelled 7.9 12 PDB header:hydrolase
Chain: B: PDB Molecule:glutaryl acylase;
PDBTitle: crystal structures of glutaryl 7-aminocephalosporanic acid acylase:2 insight into autoproteolytic activation
96d1hica_



not modelled 7.9 69 Fold:Knottins (small inhibitors, toxins, lectins)
Superfamily:Leech antihemostatic proteins
Family:Hirudin-like
97d1shwb_



not modelled 7.9 29 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:Ephrin receptor ligand binding domain
98c1rh5C_



not modelled 7.7 39 PDB header:protein transport
Chain: C: PDB Molecule:secbeta;
PDBTitle: the structure of a protein conducting channel
99d1rh5c_



not modelled 7.7 39 Fold:Single transmembrane helix
Superfamily:Sec-beta subunit
Family:Sec-beta subunit