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Job DescriptionA1L314
Confidence86.42%DateWed Jul 10 14:33:54 BST 2013
Rank7Aligned Residues328
% Identity18%Templatec3t5oA_
PDB info PDB header:immune systemChain: A: PDB Molecule:complement component c6; PDBTitle: crystal structure of human complement component c6
Resolution2.87 Å
Model Dimensions (Å)X:81.466 Y:69.679 Z:36.642

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   46...50.........60....... ..70....... ..80.........90.........
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Query Sequence  LPGGGWDNLRNVDMGRVMDLTY. . TNCKTTEDGQ. . . . YIIPDEVYTIPQKESNLEMNSE
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Template Sequence  LMGNGFHFLAGEPRGEVLDNSFTGGICKTVKSSRTSNPYRVPANLE. . . NVGFEVQTAED
Template Known Secondary structure  GGGTTTT
B
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GG
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   171........180.........190.........200.........210...... ...220.......
 
   100.........110.........120.........130.........140.........150.........
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Query Sequence  VLESWMNYQSTTSLSINTELALFSRVNGKFSTEFQRMKTLQVKDQAVTTRVQVRNRIYTV
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Template Conservation         
                                                    
Template Sequence  DLKTDFYKDLTSLGHVPIFYSSKRSENINHNSAFKQAIQASHKKDSSFIRIHKVMKVLNF
Template Known Secondary structure  GS
GGGGG






TTT





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   228.230.........240.........250.........260.........270.........280.......
 
   160. ........170.........180.........190.........200.........210........
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Query Sequence  KT. TPTSELSLGFTKALMDICDQLEKNQTKMATYLAELLILNYGTHVITSVDAGAALVQE
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Template Sequence  TTKAKDLHLSDVFLKALNHLPLEY. . NSALYSRI. . . . . FDDFGTHYFTSGSLGGVYDLL
Template Known Secondary structure 
SSS

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   305....310.........320........ .330...... ...340.........350.......
 
   219220.........230..... ....240.........250.........260...
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Query Sequence  DHVRSSFLLDNQNSQNT. . . . . . . . . . . . . . . VTASAGIAFLNIVNFKVETDYISQTSLT
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Template Sequence  YQFSSEELKNSGLTEEEAKHCVRIETKKRVLFAKKTKV. . . . . . . . EHRCTTNKLSEKHE
Template Known Secondary structure  T

TS






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GGGTSSTTGGGGT
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   358.360.........370.........380.........390..... ....400.........
 
   264.....270.........280.... .....290. ........300.........310
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Query Sequence  KDYLSNRTNSRVQSFGGVPFY. . . . . . . . . . . . PGITLET. WQKGITNHLVAIDRAGLPL
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Template Conservation                 
                          
                 
Template Sequence  GSFIQGAEKSISLIRGGRSEYGAALAWEKGSSGLEEKTFSEWLESVKENPAVIDFELAPI
Template Known Secondary structure  T
SGGGSS

BSS
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   410.........420.........430.........440.........450.........460.........
 
   311........320.........330.........340.........350.........360.........370
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Query Sequence  HFFIKPDKLPGLPGPLVKKLSKTVETAVRHYYTFNTHPGCTNVDSPNFNFQANMDDDSCD
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Template Sequence  VDLVRNIPC. . . . . . . AVTKRNNLRKALQEYAAKFDPCQCA. . PCPN. NGRPTLSGTEC.
Template Known Secondary structure  GGG

SSTT.......TT
GGGS
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BTT.TBTT.
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   470........ .480.........490.........500... .... ..510........
 
   371........380.........390.. .......400.........410.....
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Query Sequence  AKVTNFTFGGVYQECTELSGDV. . . . . LCQNLEQKNLLTGDFSCPPGYSP
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Template Conservation  ............. 
 
     
                   
     
 
Template Sequence  . . . . . . . . . . . . . LCVCQSGTYGENCEKQSPDYKSNAVDGQWGCWSSWST
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TTB
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   519520.........530.........540.........550.....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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