Phyre 2 alignment of A1L314 with d1ihma_

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Job Description | A1L314
Confidence | 27.04% | Date | Wed Jul 10 14:33:54 BST 2013
Rank | 14 | Aligned Residues | 57
% Identity | 18% | Template | d1ihma_
SCOP info | Nucleoplasmin-like/VP (viral coat and capsid proteins) | Positive stranded ssRNA viruses | Caliciviridae-like VP
Resolution | 3.40
Model Dimensions (Å) | X:39.039 Y:49.446 Z:24.451

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 558 | . | 560 | . | . | . | . | . |  |  |  |  | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | . | . | . | 600 |  |  |  | . | . | . | . | . | . | . | . | . | 610
Predicted Secondary structure |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |
Query Sequence |  | F | S | Q | H | L | A | V | I | . | . | . | . | S | D | G | C | Q | V | S | Y | C | V | K | A | G | I | F | T | G | G | S | L | L | P | V | R | L | P | P | Y | T | K | P | P | L | M | S | . | . | . | Q | V | A | T | N | T | V | I | V | T
Query Conservation |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  | . |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |
Template Sequence |  | F | L | L | H | L | S | Q | M | Y | N | G | W | V | G | N | M | R | V | R | I | M | L | A | G | N | A | F | T | A | G | K | I | I | V | S | C | I | P | P | G | F | G | S | H | N | L | T | I | A | Q | A | T | L | F | P | H | . | V | I | A
Template Known Secondary structure |  |  |  |  |  |  |  | T | T | B | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  | T | T | S |  |  |  |  |  |  |  |  |  |  | T | T | S | S |  | . |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 1092 | . | . | . | . | . | . | . | 1100 | . | . | . | . | . | . | . | . | . | 1110 | . | . | . | . | . | . | . | . | . | 1120 | . | . | . | . | . | . | . | . | . | 1130 | . | . | . | . | . | . | . | . | . | 1140 | . | . | . | . | . | . | . |  | . | . | 1150
|  | 611 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |
Query Sequence |  | N | S | E | T | A
Query Conservation |  |  |  |  |  |
Alig confidence |  |  |  |  |  |
Template Conservation |  |  |  |  |  |
Template Sequence |  | D | V | R | T | L
Template Known Secondary structure |  |  | T | T |  | S
Template Predicted Secondary structure |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |
|  | 1151 | . | . | . | .

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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