Phyre 2 alignment of A1L314 with c2kr0A_

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Job Description | A1L314
Confidence | 15.06% | Date | Wed Jul 10 14:33:54 BST 2013
Rank | 34 | Aligned Residues | 64
% Identity | 17% | Template | c2kr0A_
PDB info | PDB header:protein binding | Chain: A: PDB Molecule:proteasomal ubiquitin receptor adrm1; | PDBTitle: a proteasome protein
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 31 | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . |  | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | F | Q | I | C | K | N | A | L | K | L | P | V | L | E | V | L | P | G | G | G | W | D | N | L | R | N | V | D | M | G | R | V | . | M | D | L | T | Y | T | N | C | K | T | T | E | D | G | Q | Y | I | I | P | D | E | V | Y | T | I | P | Q
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | F | R | A | G | K | M | S | L | K | G | T | T | V | T | P | D | K | R | K | G | L | V | Y | I | Q | Q | T | D | D | S | L | I | H | F | C | W | K | D | R | T | S | G | N | V | E | D | D | L | I | I | F | P | D | D | C | E | F | K | R | V
Template Known Secondary structure |  |  |  |  |  |  |  |  |  | S | S | S | S |  |  |  |  |  | S |  |  |  |  |  |  |  |  |  | T | T | S |  |  |  |  |  |  |  |  | S | S | S |  |  |  |  |  |  |  |  |  |  | T | T | S |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 26 | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | .
|  | 90 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |
Query Sequence |  | K | E | S | N | L
Query Conservation |  |  |  |  |  |
Alig confidence |  |  |  |  |  |
Template Conservation |  |  |  |  |  |
Template Sequence |  | P | Q | C | P | S
Template Known Secondary structure |  | T | T |  | S | S
Template Predicted Secondary structure |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |
|  | 86 | . | . | . | 90

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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