Phyre 2 alignment of A1L314 with c3floD_

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Job Description | A1L314
Confidence | 23.77% | Date | Wed Jul 10 14:33:54 BST 2013
Rank | 15 | Aligned Residues | 45
% Identity | 16% | Template | c3floD_
PDB info | PDB header:transferase | Chain: D: PDB Molecule:dna polymerase alpha catalytic subunit a; | PDBTitle: crystal structure of the carboxyl-terminal domain of yeast dna2 polymerase alpha in complex with its b subunit
Resolution | 2.50 Å
Model Dimensions (Å) | X:39.377 Y:40.206 Z:28.452

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 323 | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360 | . | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | P | G | P | L | V | K | K | L | S | K | T | V | E | T | A | V | R | H | Y | Y | T | F | N | T | H | P | G | C | T | N | V | D | S | P | N | F | N | F | Q | A | N | M | D | D | D | S | C
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | P | L | Q | L | T | S | Q | I | E | H | S | I | R | A | H | I | S | L | Y | Y | A | . | G | W | L | Q | . | C | D | D | S | T | C | G | I | V | T | R | Q | V | S | V | F | G | K | R | C
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | . |  |  |  |  | . |  | S |  | T | T | T |  |  |  |  | S |  |  |  | S | S | T | T | B |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 1323 | . | . | . | . | . | . | 1330 | . | . | . | . | . | . | . | . | . | 1340 | . | . | . |  | . | . | . | . |  | . | . | 1350 | . | . | . | . | . | . | . | . | . | 1360 | . | . | . | . | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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