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Job DescriptionA1L314
Confidence100.00%DateWed Jul 10 14:33:54 BST 2013
Rank1Aligned Residues269
% Identity20%Templatec2qqhA_
PDB info PDB header:immune system, membrane proteinChain: A: PDB Molecule:complement component c8 alpha chain; PDBTitle: structure of c8a-macpf reveals mechanism of membrane attack2 in complement immune defense
Resolution2.50 Å
Model Dimensions (Å)X:52.714 Y:81.634 Z:39.234

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   32.......40.........50.........60....... ..70...... ...80
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Query Sequence  QICKNALKLPVLEVLPGGGWDNLRNVDMGRVMDLTY. . TNCKTTEDG. . . . . . . . . QYII
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Template Sequence  EDCSQYEPIPGSQ. KAALGYNILTQEDAQSVYDASYYGGQCETVYNGEWRELDDEKYFRK
Template Known Secondary structure  S
SSSS
B
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   108.110.........120 .........130.........140.........150.........160......
 
   81... .....90.........100.........110.........120..... .
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Query Sequence  PDEV. YTIPQKESNLEMNSEVLESWMNYQSTTSLSINTELALFSRV. . . . . . . . . . . . . N
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Template Sequence  PYNFLKYHFEALADTGISSEFYDNANDLLSKVKKDKSDSFGVTIGIGPAGSPLLVGVGVS
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   179180.........190.........200.........210.........220.........230........
 
   127..130.........140.........150.........160. ........170.........180.....
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Query Sequence  GKFSTEFQRMKTLQVKDQAVTTRVQVRNRIYTVKT. TPTSELSLGFTKALMDICDQLEKN
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Template Sequence  HSQDTSFLNELNKYNEKKFIFTRIFTKVQTAHFKMRKDDIMLDEGMLQSLMELPDQY. . N
Template Known Secondary structure  TTT
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   239240.........250.........260.........270.........280.........290..... .
 
   186...190.........200.........210.........220.........230.........240.....
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Query Sequence  QTKMATYLAELLILNYGTHVITSVDAGAALVQEDHVRSSFLLDNQNSQNTVTASAGIAFL
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Template Sequence  YGMYAKF. . . . . INDYGTHYITSGSMGGIYEYILVIDKAKMESL. . . . . . . . . . . . . . . .
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   297..300... ......310.........320.........330.....
 
   246...250.........260.........270.........280.........290.........300.....
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Query Sequence  NIVNFKVETDYISQTSLTKDYLSNRTNSRVQSFGGVPFYPGITLETWQKGITNHLVAIDR
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Template Sequence  . . . . . . . XXXXXXXXXXXXRKAMAVEDIISRVRGGSS. . . . . GYRSWGRSLKYNPVVIDF
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   2.......10.........20.........30. ........40.........
 
   306...310.........320.........330.........340.
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Query Sequence  AGLPLHFFIKPDKLPGLPGPLVKKLSKTVETAVRHY
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Template Sequence  EMQPIHEVLRHTSLGPLEA. . . . . KRQNLRRALDQY
Template Known Secondary structure  GGGGGTSSS
SGGG.....
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   430.........440........ .450.........460
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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