Phyre 2 alignment of A1L314 with c1no7A_

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Job Description | A1L314
Confidence | 7.92% | Date | Wed Jul 10 14:33:54 BST 2013
Rank | 93 | Aligned Residues | 13
% Identity | 15% | Template | c1no7A_
PDB info | PDB header:viral protein | Chain: A: PDB Molecule:major capsid protein; | PDBTitle: structure of the large protease resistant upper domain of2 vp5, the major capsid protein of herpes simplex virus-1
Resolution | 2.90 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 519 | 520 | . | . | . | . | . | . | . | . | . | 530 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | F | K | F | S | V | P | F | G | G | F | F | S | C
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | Y | F | Y | P | L | P | V | H | A | L | F | A | G
Template Known Secondary structure |  | S |  |  |  |  |  | S | B | T | T | B | B |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 954 | . | . | . | . | . | 960 | . | . | . | . | . | .

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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