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Job DescriptionA1L314
Confidence100.00%DateWed Jul 10 14:33:54 BST 2013
Rank2Aligned Residues291
% Identity20%Templatec2rd7A_
PDB info PDB header:immune systemChain: A: PDB Molecule:complement component c8 alpha chain; PDBTitle: human complement membrane attack proteins share a common2 fold with bacterial cytolysins
Resolution2.15 Å
Model Dimensions (Å)X:66.642 Y:69.347 Z:35.701

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   33......40.........50.........60....... ..70.......
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Query Sequence  ICKNALKLPVLEVLPGGGWDNLRNVDMGRVMDLTY. . TNCKTTEDGQ. . . . . . . . . . . . .
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Template Sequence  DCSQYEPIPGSQ. KAALGYNILTQEDAQSVYDASYYGGQCETVYNGEWRELRYDSTCERL
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TTS
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TT.TTTTTSB
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   109110.........120 .........130.........140.........150.........160.......
 
   78.80.... .....90.........100.........110.........120.
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Query Sequence  . . . . . . . . YIIPDEV. YTIPQKESNLEMNSEVLESWMNYQSTTSLSINTELAL. . . . . . .
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Template Sequence  YYGDDEKYFRKPYNFLKYHFEALADTGISSEFYDNANDLLSKVKKDKSDSFGVTIGIGSP
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   168.170.........180.........190.........200.........210.........220.......
 
   122.......130.........140.........150.........160. ........170.......
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Query Sequence  . . . FSRVNGKFSTEFQRMKTLQVKDQAVTTRVQVRNRIYTVKT. TPTSELSLGFTKALMD
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Template Sequence  LLVGVGVSHSQDTSFLNELNKYNEKKFIFTRIFTKVQTAHFKMRKDDIMLDEGMLQSLME
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TT
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   231........240.........250.........260.........270.........280.........290
 
   178.180.........190.........200.........210.........220.........230.......
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Query Sequence  ICDQLEKNQTKMATYLAELLILNYGTHVITSVDAGAALVQEDHVRSSFLLDNQNSQNTVT
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Template Sequence  LPDQY. . NYGMYAKF. . . . . INDYGTHYITSGSMGGIYEYILVIDKAKMESLGITSRDIT
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   291.... ....300... ......310.........320.........330.........340...
 
   238.240.........250.........260.........270.........280.........290.......
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Query Sequence  ASAGIAFLNIVNFKVETDYISQTSLTKDYLSNRTNSRVQSFGGVPFYPGITLETWQKGIT
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Template Sequence  TCFGGSL. . GIQYDHCKKFGGGKTERARKAMAVEDIISRVRGGS. . . STITYRSWGRSLK
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   344.....350 .........360.........370.........380..... ....390........
 
   298.300.........310.........320.........330.........340.
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Query Sequence  NHLVAIDRAGLPLHFFIKPDKLPGLPGPLVKKLSKTVETAVRHY
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Template Sequence  YNPVVIDFEMQPIHEVLRHTSLGPLEA. . . . . KRQNLRRALDQY
Template Known Secondary structure 

GGGGGGGBTT


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   422.......430.........440........ .450.........460
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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