Phyre 2 alignment of A1L314 with c3h3iA_

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Job Description | A1L314
Confidence | 13.14% | Date | Wed Jul 10 14:33:54 BST 2013
Rank | 41 | Aligned Residues | 54
% Identity | 22% | Template | c3h3iA_
PDB info | PDB header:lipid binding protein | Chain: A: PDB Molecule:putative lipid binding protein; | PDBTitle: crystal structure of a putative lipid binding protein (bt_2261) from2 bacteroides thetaiotaomicron vpi-5482 at 2.20 a resolution
Resolution | 2.20 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 524 | . | . |  | . | . | . | 530 | . | . | . | . | . | . | . | . | . |  |  |  | 540 | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | P | F | G | . | G | F | F | S | C | I | M | G | N | P | L | V | N | . | . | . | S | D | T | A | K | D | V | R | A | P | S | L | K | K | C | P | G | G | F | S | Q | H | L | A | V | I | S | D | G | C | Q | V | S | Y | C | V | K | A | G | I
Query Conservation |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template Sequence |  | P | F | G | A | G | H | L | Q | X | S | T | Y | N | T | A | S | N | S | E | T | E | X | W | L | D | D | L | G | N | F | W | E | Y | K | L | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | K | V | N | V | N | Y | A | A | R | T
Template Known Secondary structure |  | T | T |  |  |  | S |  |  |  |  |  |  |  |  | T | T |  |  | S | S |  |  |  |  |  |  | T | T | S | S | S |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  | T | T | T | T |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 53 | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | 90 | . | . | . | . | . | . | .
|  | 580 | . | . | . | . | . | . | . | . | . | 590 | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | F | T | G | G | S | L | L | P | V | R | L | P | P
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | F | S | T | T | G | F | V | D | N | V | T | Y | E
Template Known Secondary structure |  |  |  |  | S | S | S |  |  |  | S | S | S | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 98 | . | 100 | . | . | . | . | . | . | . | . | . | 110

Download: | Text version | FASTA version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
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