Phyre 2 Results for A1L314

Email | l.a.kelley@imperial.ac.uk
Description | A1L314
Date | Wed Jul 10 14:33:54 BST 2013
Unique Job ID | e8d85519151ae0a4

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2qqhA_ |
|  | 100.0 | 20 | PDB header:immune system, membrane protein Chain: A: PDB Molecule:complement component c8 alpha chain; PDBTitle: structure of c8a-macpf reveals mechanism of membrane attack2 in complement immune defense
2 | c2rd7A_ |
|  | 100.0 | 20 | PDB header:immune system Chain: A: PDB Molecule:complement component c8 alpha chain; PDBTitle: human complement membrane attack proteins share a common2 fold with bacterial cytolysins
3 | c3nsjA_ |
|  | 100.0 | 21 | PDB header:immune system Chain: A: PDB Molecule:perforin-1; PDBTitle: the x-ray crystal structure of lymphocyte perforin
4 | c2qp2A_ |
|  | 99.9 | 15 | PDB header:unknown function Chain: A: PDB Molecule:unknown protein; PDBTitle: structure of a macpf/perforin-like protein
5 | c3kk7B_ |
|  | 99.2 | 18 | PDB header:cell invasion Chain: B: PDB Molecule:putative cell invasion protein with mac/perforin domain; PDBTitle: crystal structure of putative cell invasion protein with mac/perforin2 domain (np_812351.1) from bacteriodes thetaiotaomicron vpi-5482 at3 2.46 a resolution
6 | c3ojyA_ |
|  | 96.4 | 21 | PDB header:immune system Chain: A: PDB Molecule:complement component c8 alpha chain; PDBTitle: crystal structure of human complement component c8
7 | c3t5oA_ |
|  | 86.4 | 18 | PDB header:immune system Chain: A: PDB Molecule:complement component c6; PDBTitle: crystal structure of human complement component c6
8 | c2m20B_ |
|  | 72.1 | 19 | PDB header:signaling protein Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: egfr transmembrane - juxtamembrane (tm-jm) segment in bicelles: md2 guided nmr refined structure.
9 | c2kncB_ |
|  | 64.2 | 19 | PDB header:cell adhesion Chain: B: PDB Molecule:integrin beta-3; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
10 | c3ojyB_ |
|  | 54.6 | 15 | PDB header:immune system Chain: B: PDB Molecule:complement component c8 beta chain; PDBTitle: crystal structure of human complement component c8
11 | c2kr1A_ |
|  | 33.4 | 28 | PDB header:ligase Chain: A: PDB Molecule:ubiquitin protein ligase e3a; PDBTitle: solution nmr structure of zinc binding n-terminal domain of ubiquitin-2 protein ligase e3a from homo sapiens. northeast structural genomics3 consortium (nesg) target hr3662
12 | c2kncA_ |
|  | 32.6 | 18 | PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: platelet integrin alfaiib-beta3 transmembrane-cytoplasmic2 heterocomplex
13 | c1ihmC_ |
|  | 27.0 | 18 | PDB header:virus Chain: C: PDB Molecule:capsid protein; PDBTitle: crystal structure analysis of norwalk virus capsid
14 | d1ihma_ |
|  | 27.0 | 18 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:Positive stranded ssRNA viruses Family:Caliciviridae-like VP
15 | c3floD_ |
|  | 23.8 | 16 | PDB header:transferase Chain: D: PDB Molecule:dna polymerase alpha catalytic subunit a; PDBTitle: crystal structure of the carboxyl-terminal domain of yeast dna2 polymerase alpha in complex with its b subunit
16 | c2k9yB_ |
|  | 23.8 | 19 | PDB header:transferase Chain: B: PDB Molecule:ephrin type-a receptor 2; PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
17 | c2k9yA_ |
|  | 23.8 | 19 | PDB header:transferase Chain: A: PDB Molecule:ephrin type-a receptor 2; PDBTitle: epha2 dimeric structure in the lipidic bicelle at ph 5.0
18 | c1adyA_ |
|  | 22.6 | 16 | PDB header:trna synthetase Chain: A: PDB Molecule:histidyl-trna synthetase; PDBTitle: histidyl-trna synthetase in complex with histidyl-adenylate
19 | c2qbxB_ |
|  | 21.2 | 29 | PDB header:signaling protein Chain: B: PDB Molecule:ephrin type-b receptor 2; PDBTitle: ephb2/snew antagonistic peptide complex
20 | c2ks1B_ |
|  | 20.5 | 21 | PDB header:transferase Chain: B: PDB Molecule:epidermal growth factor receptor; PDBTitle: heterodimeric association of transmembrane domains of erbb1 and erbb22 receptors enabling kinase activation
21 | c2dk6A_ |
| not modelled | 18.6 | 20 | PDB header:signaling protein Chain: A: PDB Molecule:parp11 protein; PDBTitle: solution structure of wwe domain in poly (adp-ribose)2 polymerase family, member 11 (parp 11)
22 | c2auhB_ |
| not modelled | 17.8 | 55 | PDB header:transferase/signaling protein Chain: B: PDB Molecule:growth factor receptor-bound protein 14; PDBTitle: crystal structure of the grb14 bps region in complex with2 the insulin receptor tyrosine kinase
23 | d2g38b1 |
| not modelled | 16.8 | 36 | Fold:Ferritin-like Superfamily:PE/PPE dimer-like Family:PPE
24 | c2g38B_ |
| not modelled | 16.8 | 36 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:ppe family protein; PDBTitle: a pe/ppe protein complex from mycobacterium tuberculosis
25 | c3p1iC_ |
| not modelled | 16.2 | 29 | PDB header:transferase,signaling protein Chain: C: PDB Molecule:ephrin type-b receptor 3; PDBTitle: ligand binding domain of human ephrin type-b receptor 3
26 | c3o14B_ |
| not modelled | 16.1 | 14 | PDB header:gene regulation Chain: B: PDB Molecule:anti-ecfsigma factor, chrr; PDBTitle: crystal structure of an anti-ecfsigma factor, chrr (maqu_0586) from2 marinobacter aquaeolei vt8 at 1.70 a resolution
27 | c3gr0D_ |
| not modelled | 15.9 | 13 | PDB header:membrane protein Chain: D: PDB Molecule:protein prgh; PDBTitle: periplasmic domain of the t3ss inner membrane protein prgh from2 s.typhimurium (fragment 170-362)
28 | c3dkbA_ |
| not modelled | 15.7 | 43 | PDB header:hydrolase Chain: A: PDB Molecule:tumor necrosis factor, alpha-induced protein 3; PDBTitle: crystal structure of a20, 2.5 angstrom
29 | c2cpbA_ |
| not modelled | 15.4 | 31 | PDB header:viral protein Chain: A: PDB Molecule:m13 major coat protein; PDBTitle: solution nmr structures of the major coat protein of2 filamentous bacteriophage m13 solubilized in3 dodecylphosphocholine micelles, 25 lowest energy structures
30 | c2l2tA_ |
| not modelled | 15.4 | 41 | PDB header:membrane protein Chain: A: PDB Molecule:receptor tyrosine-protein kinase erbb-4; PDBTitle: solution nmr structure of the erbb4 dimeric membrane domain
31 | c2lcxB_ |
| not modelled | 15.4 | 41 | PDB header:transferase Chain: B: PDB Molecule:receptor tyrosine-protein kinase erbb-4; PDBTitle: spatial structure of the erbb4 dimeric tm domain
32 | c2nyuA_ |
| not modelled | 15.3 | 21 | PDB header:transferase Chain: A: PDB Molecule:putative ribosomal rna methyltransferase 2; PDBTitle: crystal structure of human ftsj homolog 2 (e.coli) protein2 in complex with s-adenosylmethionine
33 | d1w7ja1 |
| not modelled | 15.3 | 45 | Fold:SH3-like barrel Superfamily:Myosin S1 fragment, N-terminal domain Family:Myosin S1 fragment, N-terminal domain
34 | c2kr0A_ |
| not modelled | 15.1 | 17 | PDB header:protein binding Chain: A: PDB Molecule:proteasomal ubiquitin receptor adrm1; PDBTitle: a proteasome protein
35 | c2ko5A_ |
| not modelled | 14.7 | 18 | PDB header:transcription Chain: A: PDB Molecule:ring finger protein z; PDBTitle: nmr solution structure of lfv-z
36 | c3gr1A_ |
| not modelled | 14.2 | 13 | PDB header:membrane protein Chain: A: PDB Molecule:protein prgh; PDBTitle: periplamic domain of the t3ss inner membrane protein prgh2 from s.typhimurium (fragment 170-392)
37 | d1rp4a_ |
| not modelled | 13.7 | 17 | Fold:ERO1-like Superfamily:ERO1-like Family:ERO1-like
38 | d1v5ra1 |
| not modelled | 13.6 | 42 | Fold:N domain of copper amine oxidase-like Superfamily:GAS2 domain-like Family:GAS2 domain
39 | c2lohA_ |
| not modelled | 13.6 | 19 | PDB header:neuropeptide Chain: A: PDB Molecule:p3(42); PDBTitle: dimeric structure of transmembrane domain of amyloid precursor protein2 in micellar environment
40 | d1c3ab_ |
| not modelled | 13.5 | 23 | Fold:C-type lectin-like Superfamily:C-type lectin-like Family:C-type lectin domain
41 | c3h3iA_ |
| not modelled | 13.1 | 22 | PDB header:lipid binding protein Chain: A: PDB Molecule:putative lipid binding protein; PDBTitle: crystal structure of a putative lipid binding protein (bt_2261) from2 bacteroides thetaiotaomicron vpi-5482 at 2.20 a resolution
42 | c2l8sA_ |
| not modelled | 13.0 | 11 | PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-1; PDBTitle: solution nmr structure of transmembrane and cytosolic regions of2 integrin alpha1 in detergent micelles
43 | d1v7pa_ |
| not modelled | 12.6 | 36 | Fold:C-type lectin-like Superfamily:C-type lectin-like Family:C-type lectin domain
44 | c4bq7D_ |
| not modelled | 11.6 | 40 | PDB header:cell adhesion Chain: D: PDB Molecule:rgm domain family member b; PDBTitle: crystal structure of the rgmb-neo1 complex form 2
45 | c1ifpA_ |
| not modelled | 11.6 | 20 | PDB header:virus Chain: A: PDB Molecule:major coat protein assembly; PDBTitle: inovirus (filamentous bacteriophage) strain pf3 major coat2 protein assembly
46 | c3douA_ |
| not modelled | 11.1 | 50 | PDB header:transferase Chain: A: PDB Molecule:ribosomal rna large subunit methyltransferase j; PDBTitle: crystal structure of methyltransferase involved in cell2 division from thermoplasma volcanicum gss1
47 | c3m8lA_ |
| not modelled | 10.9 | 19 | PDB header:virus Chain: A: PDB Molecule:capsid protein; PDBTitle: crystal structure analysis of the feline calicivirus capsid protein
48 | c1kg1A_ |
| not modelled | 10.8 | 33 | PDB header:toxin Chain: A: PDB Molecule:necrosis inducing protein 1; PDBTitle: nmr structure of the nip1 elicitor protein from2 rhynchosporium secalis
49 | d1kg1a_ |
| not modelled | 10.8 | 33 | Fold:Necrosis inducing protein 1, NIP1 Superfamily:Necrosis inducing protein 1, NIP1 Family:Necrosis inducing protein 1, NIP1
50 | d1k1xa1 |
| not modelled | 10.6 | 38 | Fold:immunoglobulin/albumin-binding domain-like Superfamily:Families 57/38 glycoside transferase middle domain Family:4-alpha-glucanotransferase, domain 2
51 | c2kpeB_ |
| not modelled | 10.5 | 35 | PDB header:membrane protein Chain: B: PDB Molecule:glycophorin-a; PDBTitle: refined structure of glycophorin a transmembrane segment dimer in dpc2 micelles
52 | c2kpeA_ |
| not modelled | 10.5 | 35 | PDB header:membrane protein Chain: A: PDB Molecule:glycophorin-a; PDBTitle: refined structure of glycophorin a transmembrane segment dimer in dpc2 micelles
53 | c1afoB_ |
| not modelled | 10.2 | 31 | PDB header:integral membrane protein Chain: B: PDB Molecule:glycophorin a; PDBTitle: dimeric transmembrane domain of human glycophorin a, nmr,2 20 structures
54 | c2xrfA_ |
| not modelled | 10.2 | 22 | PDB header:transferase Chain: A: PDB Molecule:uridine phosphorylase 2; PDBTitle: crystal structure of human uridine phosphorylase 2
55 | c1h3tB_ |
| not modelled | 10.1 | 17 | PDB header:immune system Chain: B: PDB Molecule:ig gamma-1 chain c region; PDBTitle: crystal structure of the human igg1 fc-fragment,glycoform2 (mn2f)2
56 | c4a18P_ |
| not modelled | 9.8 | 23 | PDB header:ribosome Chain: P: PDB Molecule:rpl38; PDBTitle: t.thermophila 60s ribosomal subunit in complex with initiation2 factor 6. this file contains 26s rrna and proteins of molecule 1
57 | c3k44D_ |
| not modelled | 9.7 | 33 | PDB header:nucleic acid binding protein Chain: D: PDB Molecule:purine-rich binding protein-alpha, isoform b; PDBTitle: crystal structure of drosophila melanogaster pur-alpha
58 | d1hdla_ |
| not modelled | 9.7 | 16 | Fold:Kazal-type serine protease inhibitors Superfamily:Kazal-type serine protease inhibitors Family:Serine proteinase inhibitor lekti
59 | c2e2wA_ |
| not modelled | 9.6 | 33 | PDB header:ligase Chain: A: PDB Molecule:dna ligase 4; PDBTitle: solution structure of the first brct domain of human dna2 ligase iv
60 | c4g84B_ |
| not modelled | 9.6 | 19 | PDB header:ligase Chain: B: PDB Molecule:histidine--trna ligase, cytoplasmic; PDBTitle: crystal structure of human hisrs
61 | c3mkuA_ |
| not modelled | 9.6 | 22 | PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter
62 | c4esnB_ |
| not modelled | 9.4 | 19 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:hypothetical protein; PDBTitle: crystal structure of a hypothetical protein (rumgna_02503) from2 ruminococcus gnavus atcc 29149 at 2.20 a resolution
63 | d3bdwa1 |
| not modelled | 9.3 | 21 | Fold:C-type lectin-like Superfamily:C-type lectin-like Family:C-type lectin domain
64 | c4a53A_ |
| not modelled | 9.2 | 50 | PDB header:rna binding protein Chain: A: PDB Molecule:edc3; PDBTitle: structural basis of the dcp1:dcp2 mrna decapping complex activation2 by edc3 and scd6
65 | c4djiA_ |
| not modelled | 9.2 | 6 | PDB header:transport protein Chain: A: PDB Molecule:probable glutamate/gamma-aminobutyrate antiporter; PDBTitle: structure of glutamate-gaba antiporter gadc
66 | c4iopB_ |
| not modelled | 9.1 | 14 | PDB header:immune system Chain: B: PDB Molecule:killer cell lectin-like receptor subfamily f member 2; PDBTitle: crystal structure of nkp65 bound to its ligand kacl
67 | c3m9zA_ |
| not modelled | 9.0 | 17 | PDB header:signaling protein Chain: A: PDB Molecule:killer cell lectin-like receptor subfamily b member 1a; PDBTitle: crystal structure of extracellular domain of mouse nkr-p1a
68 | c3zrhA_ |
| not modelled | 9.0 | 27 | PDB header:hydrolase Chain: A: PDB Molecule:ubiquitin thioesterase zranb1; PDBTitle: crystal structure of the lys29, lys33-linkage-specific trabid otu2 deubiquitinase domain reveals an ankyrin-repeat ubiquitin binding3 domain (ankubd)
69 | d1pfoa_ |
| not modelled | 9.0 | 10 | Fold:Perfringolysin Superfamily:Perfringolysin Family:Perfringolysin
70 | c1pfoA_ |
| not modelled | 9.0 | 10 | PDB header:toxin Chain: A: PDB Molecule:perfringolysin o; PDBTitle: perfringolysin o
71 | d1c3aa_ |
| not modelled | 9.0 | 60 | Fold:C-type lectin-like Superfamily:C-type lectin-like Family:C-type lectin domain
72 | c2k5jB_ |
| not modelled | 9.0 | 17 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein yiif; PDBTitle: solution structure of protein yiif from shigella flexneri2 serotype 5b (strain 8401) . northeast structural genomics3 consortium target sft1
73 | c2k1aA_ |
| not modelled | 8.9 | 17 | PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-iib; PDBTitle: bicelle-embedded integrin alpha(iib) transmembrane segment
74 | d2rgfa_ |
| not modelled | 8.9 | 22 | Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD
75 | c3a9lB_ |
| not modelled | 8.7 | 16 | PDB header:hydrolase Chain: B: PDB Molecule:poly-gamma-glutamate hydrolase; PDBTitle: structure of bacteriophage poly-gamma-glutamate hydrolase
76 | c3zf7p_ |
| not modelled | 8.7 | 14 | PDB header:ribosome Chain: P: PDB Molecule:probable 60s ribosomal protein l14; PDBTitle: high-resolution cryo-electron microscopy structure of the trypanosoma2 brucei ribosome
77 | d2zkmx4 |
| not modelled | 8.7 | 20 | Fold:TIM beta/alpha-barrel Superfamily:PLC-like phosphodiesterases Family:Mammalian PLC
78 | c1b5fC_ |
| not modelled | 8.6 | 16 | PDB header:hydrolase Chain: C: PDB Molecule:protein (cardosin a); PDBTitle: native cardosin a from cynara cardunculus l.
79 | d1dx5i2 |
| not modelled | 8.6 | 29 | Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:EGF/Laminin Family:EGF-type module
80 | d1g5ga1 |
| not modelled | 8.5 | 34 | Fold:Head and neck region of the ectodomain of NDV fusion glycoprotein Superfamily:Head and neck region of the ectodomain of NDV fusion glycoprotein Family:Head and neck region of the ectodomain of NDV fusion glycoprotein
81 | c3g6nA_ |
| not modelled | 8.3 | 17 | PDB header:hydrolase Chain: A: PDB Molecule:peptide deformylase; PDBTitle: crystal structure of an efpdf complex with met-ala-ser
82 | c3pilA_ |
| not modelled | 8.3 | 35 | PDB header:oxidoreductase Chain: A: PDB Molecule:peptide methionine sulfoxide reductase; PDBTitle: crystal structure of mxr1 from saccharomyces cerevisiae in reduced2 form
83 | c1ciiA_ |
| not modelled | 8.2 | 7 | PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia
84 | c3bzjA_ |
| not modelled | 8.2 | 13 | PDB header:hydrolase Chain: A: PDB Molecule:uv endonuclease; PDBTitle: uvde k229l
85 | c2kppA_ |
| not modelled | 8.2 | 26 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:lin0431 protein; PDBTitle: solution nmr structure of lin0431 protein from listeria innocua.2 northeast structural genomics consortium target lkr112
86 | c3ry6A_ |
| not modelled | 8.2 | 21 | PDB header:immune system Chain: A: PDB Molecule:ig gamma-1 chain c region; PDBTitle: complex of fcgammariia (cd32) and the fc of human igg1
87 | c3ry6B_ |
| not modelled | 8.2 | 21 | PDB header:immune system Chain: B: PDB Molecule:ig gamma-1 chain c region; PDBTitle: complex of fcgammariia (cd32) and the fc of human igg1
88 | d1e88a3 |
| not modelled | 8.1 | 21 | Fold:FnI-like domain Superfamily:FnI-like domain Family:Fibronectin type I module
89 | c2k5lA_ |
| not modelled | 8.0 | 15 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:feoa; PDBTitle: solution nmr structure of protein feoa from clostridium2 thermocellum, northeast structural genomics consortium3 target cmr17
90 | d1kshb_ |
| not modelled | 8.0 | 19 | Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:RhoGDI-like
91 | d1xdna_ |
| not modelled | 8.0 | 22 | Fold:ATP-grasp Superfamily:DNA ligase/mRNA capping enzyme, catalytic domain Family:RNA ligase
92 | d1jv2a2 |
| not modelled | 7.9 | 22 | Fold:Immunoglobulin-like beta-sandwich Superfamily:Integrin domains Family:Integrin domains
93 | c1no7A_ |
| not modelled | 7.9 | 15 | PDB header:viral protein Chain: A: PDB Molecule:major capsid protein; PDBTitle: structure of the large protease resistant upper domain of2 vp5, the major capsid protein of herpes simplex virus-1
94 | d1no7a_ |
| not modelled | 7.9 | 15 | Fold:Major capsid protein VP5 Superfamily:Major capsid protein VP5 Family:Major capsid protein VP5
95 | c1oqzB_ |
| not modelled | 7.9 | 12 | PDB header:hydrolase Chain: B: PDB Molecule:glutaryl acylase; PDBTitle: crystal structures of glutaryl 7-aminocephalosporanic acid acylase:2 insight into autoproteolytic activation
96 | d1hica_ |
| not modelled | 7.9 | 69 | Fold:Knottins (small inhibitors, toxins, lectins) Superfamily:Leech antihemostatic proteins Family:Hirudin-like
97 | d1shwb_ |
| not modelled | 7.9 | 29 | Fold:Galactose-binding domain-like Superfamily:Galactose-binding domain-like Family:Ephrin receptor ligand binding domain
98 | c1rh5C_ |
| not modelled | 7.7 | 39 | PDB header:protein transport Chain: C: PDB Molecule:secbeta; PDBTitle: the structure of a protein conducting channel
99 | d1rh5c_ |
| not modelled | 7.7 | 39 | Fold:Single transmembrane helix Superfamily:Sec-beta subunit Family:Sec-beta subunit