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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1pfoA_

Fold library idPDB HeaderMoleculeTitle
c1pfoA_PDB header: toxinChain: A: PDB Molecule: perfringolysin o;PDBTitle: perfringolysin o


Added to library: Tue Mar 16 12:41:02 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DITDKNQSIDSGISSLSYNRNEVLASNGDKIESFVPKEGKKAGNKFIVVERQKRSLTTSPVDISIIDSVN
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Known secondary structure (DSSP)

TTS

ST



TTTSS








S
SS

SS
S
TTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence DRTYPGALQLADKALVENRPTILMVKRKPININIDLPGLKGENSIKVDDPTYGKVSGAIDELVSKWNEKY
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TT

STT


B



B



TT
TTS
SS

T
 .........150.........160.........170.........180.........190.........200.........210
Sequence SSTHTLPARTQYSESMVYSKSQISSALNVNAKVLENSLGVDFNAVANNEKKVMILAYKQIFYTVSADLPK
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Known secondary structure (DSSP) TT





TS
T


TTSS


S
 .........220.........230.........240.........250.........260.........270.........280
Sequence NPSDLFDDSVTFNDLKQKGVSNEAPPLMVSNVAYGRTIYVKLETTSSSKDVQAAFKALIKNTDIKNSQQY
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Known secondary structure (DSSP) SB
TT

TT
BTTB
S


TTT
GGGGS
 .........290.........300.........310.........320.........330.........340.........350
Sequence KDIYENSSFTAVVLGGDAQEHNKVVTKDFDEIRKVIKDNATFSTKNPAYPISYTSVFLKDNSVAAVHNKT
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Known secondary structure (DSSP) TTTS
TT

S
T
TTS


TTT

B



 .........360.........370.........380.........390.........400.........410.........420
Sequence DYIETTSTEYSKGKINLDHSGAYVAQFEVAWDEVSYDKEGNEVLTHKTWDGNYQDKTAHYSTVIPLEANA
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Known secondary structure (DSSP)


SS

TTS

TTTT

B
SS
TT
 .........430.........440.........450.........460.........470.
Sequence RNIRIKARECTGLAWEWWRDVISEYDVPLTNNINVSIWGTTLYPGSSITYN
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Known secondary structure (DSSP)

SSSGGGS
SS



S
SSS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Michael Sternberg 
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