Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionO34090
DateTue Jul 17 17:05:02 BST 2012
Unique Job ID73b5b93bc6276f95

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c2ypnA_
Top template information
PDB header:transferase
Chain: A: PDB Molecule:protein (hydroxymethylbilane synthase);
PDBTitle: hydroxymethylbilane synthase
Confidence and coverage
Confidence:100.0% Coverage: 94%
288 residues ( 94% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MRKLVVGSRRSKLALTQSQQFIDKLKAVEPNLEIEIKEIVTKGDRIVDKQLSKVGGKGLF
Secondary structure 
SS confidence 
Disorder  ??
?
??
???
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  VKEIQHELFEKNIDMAIHSLKDVPSVIPEGLTLGCIPDRELPFDAYISKTHTPLSQLPEG
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  SIIGTSSLRRGAQILSKYPNLEIKWIRGNIDTRLEKLQTEDYDAIILAAAGLRRMGWSDD
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  IVTSYLDRDTLLPAIGQGALGIECRSDDEELLTLLSKVHNDEVAKCVTAERTFLAEMDGS
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  CQVPIAGYATISDQNEIEFTGLIMTPDGKERFEYTMNGTDPVELGKTVSNKLKEQGAYEI
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   ........
Sequence  IKRLNEQH
Secondary structure 
SS confidence 
Disorder 
???
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 2ypn chain A

3D model

Region: 2 - 308
Aligned: 288
Modelled: 290
Confidence: 100.0%
Identity: 43%
PDB header:transferase
Chain: A: PDB Molecule:protein (hydroxymethylbilane synthase);
PDBTitle: hydroxymethylbilane synthase

Phyre2

PDB 3eq1 chain A

3D model

Region: 2 - 306
Aligned: 282
Modelled: 284
Confidence: 100.0%
Identity: 42%
PDB header:transferase
Chain: A: PDB Molecule:porphobilinogen deaminase;
PDBTitle: the crystal structure of human porphobilinogen deaminase at2 2.8a resolution

Phyre2

PDB 1pda chain A domain 1

3D model

Region: 2 - 218
Aligned: 207
Modelled: 217
Confidence: 100.0%
Identity: 50%
Fold: Periplasmic binding protein-like II
Superfamily: Periplasmic binding protein-like II
Family: Phosphate binding protein-like

Phyre2

PDB 1gtk chain A domain 2

3D model

Region: 219 - 308
Aligned: 89
Modelled: 90
Confidence: 99.9%
Identity: 33%
Fold: dsRBD-like
Superfamily: Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
Family: Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain

Phyre2

PDB 1pda chain A domain 2

3D model

Region: 219 - 305
Aligned: 86
Modelled: 87
Confidence: 99.9%
Identity: 35%
Fold: dsRBD-like
Superfamily: Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
Family: Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain

Phyre2

PDB 1p99 chain A

3D model

Region: 3 - 230
Aligned: 197
Modelled: 209
Confidence: 97.6%
Identity: 15%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein pg110;
PDBTitle: 1.7a crystal structure of protein pg110 from staphylococcus2 aureus

Phyre2

PDB 1p99 chain A

3D model

Region: 3 - 230
Aligned: 197
Modelled: 209
Confidence: 97.6%
Identity: 15%
Fold: Periplasmic binding protein-like II
Superfamily: Periplasmic binding protein-like II
Family: Phosphate binding protein-like

Phyre2

PDB 3gxa chain A

3D model

Region: 2 - 228
Aligned: 198
Modelled: 208
Confidence: 97.4%
Identity: 15%
PDB header:protein binding
Chain: A: PDB Molecule:outer membrane lipoprotein gna1946;
PDBTitle: crystal structure of gna1946

Phyre2

PDB 2x26 chain A

3D model

Region: 2 - 233
Aligned: 209
Modelled: 213
Confidence: 97.4%
Identity: 14%
PDB header:transport protein
Chain: A: PDB Molecule:periplasmic aliphatic sulphonates-binding protein;
PDBTitle: crystal structure of the periplasmic aliphatic sulphonate2 binding protein ssua from escherichia coli

Phyre2

PDB 3uif chain A

3D model

Region: 2 - 167
Aligned: 145
Modelled: 150
Confidence: 96.9%
Identity: 17%
PDB header:transport protein
Chain: A: PDB Molecule:sulfonate abc transporter, periplasmic sulfonate-binding
PDBTitle: crystal structure of putative sulfonate abc transporter, periplasmic2 sulfonate-binding protein ssua from methylobacillus flagellatus kt

Phyre2

PDB 3tqw chain A

3D model

Region: 4 - 228
Aligned: 198
Modelled: 202
Confidence: 96.9%
Identity: 19%
PDB header:transport protein
Chain: A: PDB Molecule:methionine-binding protein;
PDBTitle: structure of a abc transporter, periplasmic substrate-binding protein2 from coxiella burnetii

Phyre2

PDB 3ir1 chain F

3D model

Region: 2 - 228
Aligned: 193
Modelled: 207
Confidence: 96.8%
Identity: 16%
PDB header:protein binding
Chain: F: PDB Molecule:outer membrane lipoprotein gna1946;
PDBTitle: crystal structure of lipoprotein gna1946 from neisseria2 meningitidis

Phyre2

PDB 3un6 chain A

3D model

Region: 2 - 201
Aligned: 178
Modelled: 181
Confidence: 96.4%
Identity: 12%
PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein saouhsc_00137;
PDBTitle: 2.0 angstrom crystal structure of ligand binding component of abc-type2 import system from staphylococcus aureus with zinc bound

Phyre2

PDB 2ozz chain A domain 1

3D model

Region: 66 - 230
Aligned: 157
Modelled: 165
Confidence: 96.0%
Identity: 15%
Fold: Periplasmic binding protein-like II
Superfamily: Periplasmic binding protein-like II
Family: Phosphate binding protein-like

Phyre2

PDB 3e4r chain A

3D model

Region: 1 - 167
Aligned: 145
Modelled: 148
Confidence: 95.7%
Identity: 17%
PDB header:transport protein
Chain: A: PDB Molecule:nitrate transport protein;
PDBTitle: crystal structure of the alkanesulfonate binding protein2 (ssua) from the phytopathogenic bacteria xanthomonas3 axonopodis pv. citri bound to hepes

Phyre2

PDB 3l6g chain A

3D model

Region: 2 - 167
Aligned: 144
Modelled: 147
Confidence: 95.1%
Identity: 10%
PDB header:glycine betaine-binding protein
Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding
PDBTitle: crystal structure of lactococcal opuac in its open conformation

Phyre2

PDB 1xs5 chain A

3D model

Region: 2 - 228
Aligned: 199
Modelled: 206
Confidence: 94.8%
Identity: 16%
Fold: Periplasmic binding protein-like II
Superfamily: Periplasmic binding protein-like II
Family: Phosphate binding protein-like

Phyre2

PDB 3kzg chain B

3D model

Region: 18 - 217
Aligned: 177
Modelled: 180
Confidence: 94.3%
Identity: 12%
PDB header:transport protein
Chain: B: PDB Molecule:arginine 3rd transport system periplasmic binding
PDBTitle: crystal structure of an arginine 3rd transport system2 periplasmic binding protein from legionella pneumophila

Phyre2

PDB 3up9 chain A

3D model

Region: 1 - 228
Aligned: 206
Modelled: 210
Confidence: 93.8%
Identity: 16%
PDB header:methionine-binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative lipoprotein (actodo_00931) from2 actinomyces odontolyticus atcc 17982 at 2.35 a resolution

Phyre2

PDB 1zbm chain A domain 1

3D model

Region: 61 - 167
Aligned: 102
Modelled: 107
Confidence: 93.5%
Identity: 12%
Fold: Periplasmic binding protein-like II
Superfamily: Periplasmic binding protein-like II
Family: Phosphate binding protein-like

Phyre2
1
c2ypnA_
2
c3eq1A_
3
d1pdaa1
4
d1gtka2
5
d1pdaa2
6
c1p99A_
7
d1p99a_
8
c3gxaA_
9
c2x26A_
10
c3uifA_
11
c3tqwA_
12
c3ir1F_
13
c3un6A_
14
d2ozza1
15
c3e4rA_
16
c3l6gA_
17
d1xs5a_
18
c3kzgB_
19
c3up9A_
20
d1zbma1
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99



Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c2ypnA_
100.0 43 PDB header:transferase
Chain: A: PDB Molecule:protein (hydroxymethylbilane synthase);
PDBTitle: hydroxymethylbilane synthase
2c3eq1A_
100.0 42 PDB header:transferase
Chain: A: PDB Molecule:porphobilinogen deaminase;
PDBTitle: the crystal structure of human porphobilinogen deaminase at2 2.8a resolution
3d1pdaa1
100.0 50 Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
4d1gtka2
99.9 33 Fold:dsRBD-like
Superfamily:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
Family:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
5d1pdaa2
99.9 35 Fold:dsRBD-like
Superfamily:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
Family:Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
6c1p99A_
97.6 15 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:hypothetical protein pg110;
PDBTitle: 1.7a crystal structure of protein pg110 from staphylococcus2 aureus
7d1p99a_
97.6 15 Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
8c3gxaA_
97.4 15 PDB header:protein binding
Chain: A: PDB Molecule:outer membrane lipoprotein gna1946;
PDBTitle: crystal structure of gna1946
9c2x26A_
97.4 14 PDB header:transport protein
Chain: A: PDB Molecule:periplasmic aliphatic sulphonates-binding protein;
PDBTitle: crystal structure of the periplasmic aliphatic sulphonate2 binding protein ssua from escherichia coli
10c3uifA_
96.9 17 PDB header:transport protein
Chain: A: PDB Molecule:sulfonate abc transporter, periplasmic sulfonate-binding
PDBTitle: crystal structure of putative sulfonate abc transporter, periplasmic2 sulfonate-binding protein ssua from methylobacillus flagellatus kt
11c3tqwA_
96.9 19 PDB header:transport protein
Chain: A: PDB Molecule:methionine-binding protein;
PDBTitle: structure of a abc transporter, periplasmic substrate-binding protein2 from coxiella burnetii
12c3ir1F_
96.8 16 PDB header:protein binding
Chain: F: PDB Molecule:outer membrane lipoprotein gna1946;
PDBTitle: crystal structure of lipoprotein gna1946 from neisseria2 meningitidis
13c3un6A_
96.4 12 PDB header:unknown function
Chain: A: PDB Molecule:hypothetical protein saouhsc_00137;
PDBTitle: 2.0 angstrom crystal structure of ligand binding component of abc-type2 import system from staphylococcus aureus with zinc bound
14d2ozza1
96.0 15 Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
15c3e4rA_
95.7 17 PDB header:transport protein
Chain: A: PDB Molecule:nitrate transport protein;
PDBTitle: crystal structure of the alkanesulfonate binding protein2 (ssua) from the phytopathogenic bacteria xanthomonas3 axonopodis pv. citri bound to hepes
16c3l6gA_
95.1 10 PDB header:glycine betaine-binding protein
Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding
PDBTitle: crystal structure of lactococcal opuac in its open conformation
17d1xs5a_
94.8 16 Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
18c3kzgB_
94.3 12 PDB header:transport protein
Chain: B: PDB Molecule:arginine 3rd transport system periplasmic binding
PDBTitle: crystal structure of an arginine 3rd transport system2 periplasmic binding protein from legionella pneumophila
19c3up9A_
93.8 16 PDB header:methionine-binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of a putative lipoprotein (actodo_00931) from2 actinomyces odontolyticus atcc 17982 at 2.35 a resolution
20d1zbma1
93.5 12 Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
21d2czla1
not modelled 91.5 13 Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
22c3hn0A_
not modelled 91.1 10 PDB header:transport protein
Chain: A: PDB Molecule:nitrate transport protein;
PDBTitle: crystal structure of an abc transporter (bdi_1369) from2 parabacteroides distasonis at 1.75 a resolution
23c3tmgA_
not modelled 90.5 12 PDB header:transport protein
Chain: A: PDB Molecule:glycine betaine, l-proline abc transporter,
PDBTitle: crystal structure of glycine betaine, l-proline abc transporter,2 glycine/betaine/l-proline-binding protein (prox) from borrelia3 burgdorferi
24c4ef2A_
not modelled 90.4 21 PDB header:methionine-binding protein
Chain: A: PDB Molecule:pheromone cob1/lipoprotein, yaec family;
PDBTitle: crystal structure of a pheromone cob1 precursor/lipoprotein, yaec2 family (ef2496) from enterococcus faecalis v583 at 2.10 a resolution
25c3qslA_
not modelled 89.8 16 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative exported protein;
PDBTitle: structure of cae31940 from bordetella bronchiseptica rb50
26c3k2dA_
not modelled 88.8 15 PDB header:immune system
Chain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component;
PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus
27c3ix1A_
not modelled 85.0 15 PDB header:biosynthetic protein
Chain: A: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding
PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans
28c3ix1B_
not modelled 85.0 15 PDB header:biosynthetic protein
Chain: B: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding
PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans
29c3ho7A_
not modelled 84.9 25 PDB header:transcription
Chain: A: PDB Molecule:oxyr;
PDBTitle: crystal structure of oxyr from porphyromonas gingivalis
30c2x7pA_
not modelled 84.0 17 PDB header:unknown function
Chain: A: PDB Molecule:possible thiamine biosynthesis enzyme;
PDBTitle: the conserved candida albicans ca3427 gene product defines a new2 family of proteins exhibiting the generic periplasmic binding3 protein structural fold
31c2h9bB_
not modelled 82.7 18 PDB header:transcription
Chain: B: PDB Molecule:hth-type transcriptional regulator benm;
PDBTitle: crystal structure of the effector binding domain of a benm variant2 (benm r156h/t157s)
32c3n6uA_
not modelled 76.8 12 PDB header:transcription regulator
Chain: A: PDB Molecule:lysr type regulator of tsambcd;
PDBTitle: effector binding domain of tsar in complex with its inducer p-2 toluenesulfonate
33c3g41A_
not modelled 74.0 15 PDB header:transport protein
Chain: A: PDB Molecule:amino acid abc transporter, periplasmic amino acid-binding
PDBTitle: the structure of cpn0482, the arginine binding protein from the2 periplasm of chlamydia pneumoniae
34c3delC_
not modelled 73.8 12 PDB header:protein binding, transport protein
Chain: C: PDB Molecule:arginine binding protein;
PDBTitle: the structure of ct381, the arginine binding protein from the2 periplasm chlamydia trachomatis
35d2nxoa1
not modelled 73.4 14 Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
36c2q2aD_
not modelled 72.4 12 PDB header:transport protein
Chain: D: PDB Molecule:artj;
PDBTitle: crystal structures of the arginine-, lysine-, histidine-2 binding protein artj from the thermophilic bacterium3 geobacillus stearothermophilus
37d1i6aa_
not modelled 70.2 20 Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
38c3fd3A_
not modelled 70.0 13 PDB header:transcription regulator
Chain: A: PDB Molecule:chromosome replication initiation inhibitor protein;
PDBTitle: structure of the c-terminal domains of a lysr family protein from2 agrobacterium tumefaciens str. c58.
39d1ixca2
not modelled 67.7 17 Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
40d1ex2a_
not modelled 63.2 17 Fold:Anticodon-binding domain-like
Superfamily:ITPase-like
Family:Maf-like
41c2ylnA_
not modelled 63.1 9 PDB header:transport protein
Chain: A: PDB Molecule:putative abc transporter, periplasmic binding protein,
PDBTitle: crystal structure of the l-cystine solute receptor of2 neisseria gonorrhoeae in the closed conformation
42d1zwya1
not modelled 61.7 14 Fold:Anticodon-binding domain-like
Superfamily:ITPase-like
Family:YjjX-like
43d1u5wa1
not modelled 60.9 10 Fold:Anticodon-binding domain-like
Superfamily:ITPase-like
Family:YjjX-like
44d1al3a_
not modelled 60.1 13 Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
45c1al3A_
not modelled 60.1 13 PDB header:transcription regulation
Chain: A: PDB Molecule:cys regulon transcriptional activator cysb;
PDBTitle: cofactor binding fragment of cysb from klebsiella aerogenes
46c2o1mB_
not modelled 57.0 11 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:probable amino-acid abc transporter
PDBTitle: crystal structure of the probable amino-acid abc2 transporter extracellular-binding protein ytmk from3 bacillus subtilis. northeast structural genomics4 consortium target sr572
47c2p5xB_
not modelled 56.9 17 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:n-acetylserotonin o-methyltransferase-like protein;
PDBTitle: crystal structure of maf domain of human n-acetylserotonin o-2 methyltransferase-like protein
48c3hv1A_
not modelled 52.1 10 PDB header:transport protein
Chain: A: PDB Molecule:polar amino acid abc uptake transporter substrate
PDBTitle: crystal structure of a polar amino acid abc uptake2 transporter substrate binding protein from streptococcus3 thermophilus
49d2amha1
not modelled 47.6 30 Fold:Anticodon-binding domain-like
Superfamily:ITPase-like
Family:Maf-like
50c1twyG_
not modelled 43.7 18 PDB header:structural genomics, unknown function
Chain: G: PDB Molecule:abc transporter, periplasmic substrate-binding protein;
PDBTitle: crystal structure of an abc-type phosphate transport receptor from2 vibrio cholerae
51d1twya_
not modelled 43.7 18 Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
52d1hsla_
not modelled 43.3 17 Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
53c2vd3B_
not modelled 40.4 13 PDB header:transferase
Chain: B: PDB Molecule:atp phosphoribosyltransferase;
PDBTitle: the structure of histidine inhibited hisg from2 methanobacterium thermoautotrophicum
54c3n5lA_
not modelled 39.5 13 PDB header:transport protein
Chain: A: PDB Molecule:binding protein component of abc phosphonate transporter;
PDBTitle: crystal structure of a binding protein component of abc phosphonate2 transporter (pa3383) from pseudomonas aeruginosa at 1.97 a resolution
55d1lsta_
not modelled 39.2 17 Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
56c3oxnD_
not modelled 38.9 11 PDB header:transcription regulator
Chain: D: PDB Molecule:putative transcriptional regulator, lysr family;
PDBTitle: the crystal structure of a putative transcriptional regulator from2 vibrio parahaemolyticus
57c2i4cA_
not modelled 34.4 12 PDB header:transport protein
Chain: A: PDB Molecule:bicarbonate transporter;
PDBTitle: crystal structure of bicarbonate transport protein cmpa from2 synechocystis sp. pcc 6803 in complex with bicarbonate and calcium
58c2pfzA_
not modelled 33.2 13 PDB header:transport protein
Chain: A: PDB Molecule:putative exported protein;
PDBTitle: crystal structure of dctp6, a bordetella pertussis2 extracytoplasmic solute receptor binding pyroglutamic acid
59c2y7iB_
not modelled 33.2 12 PDB header:arginine-binding protein
Chain: B: PDB Molecule:stm4351;
PDBTitle: structural basis for high arginine specificity in salmonella2 typhimurium periplasmic binding protein stm4351.
60c2ieeB_
not modelled 31.0 11 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:probable abc transporter extracellular-binding
PDBTitle: crystal structure of yckb_bacsu from bacillus subtilis.2 northeast structural genomics consortium target sr574.
61c3r6uA_
not modelled 30.4 20 PDB header:transport protein
Chain: A: PDB Molecule:choline-binding protein;
PDBTitle: crystal structure of choline binding protein opubc from bacillus2 subtilis
62d1zh8a1
not modelled 29.5 17 Fold:NAD(P)-binding Rossmann-fold domains
Superfamily:NAD(P)-binding Rossmann-fold domains
Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
63c2uyeA_
not modelled 29.4 13 PDB header:transcription
Chain: A: PDB Molecule:regulatory protein;
PDBTitle: double mutant y110s,f111v dntr from burkholderia sp. strain2 dnt in complex with thiocyanate
64d1ni7a_
not modelled 29.3 15 Fold:SufE/NifU
Superfamily:SufE/NifU
Family:SufE-like
65c3r39A_
not modelled 28.4 8 PDB header:
PDB COMPND:
66c4eq9A_
not modelled 28.4 14 PDB header:transport protein
Chain: A: PDB Molecule:abc transporter substrate-binding protein-amino acid
PDBTitle: 1.4 angstrom crystal structure of putative abc transporter substrate-2 binding protein from streptococcus pneumoniae strain canada mdr_19a3 in complex with glutathione
67c2h9qC_
not modelled 28.2 13 PDB header:transcription
Chain: C: PDB Molecule:hth-type transcriptional regulator catm;
PDBTitle: crystal structure of the effector binding domain of a catm2 variant (r156h)
68c2ql3G_
not modelled 27.4 13 PDB header:transcription
Chain: G: PDB Molecule:probable transcriptional regulator, lysr family protein;
PDBTitle: crystal structure of the c-terminal domain of a probable lysr family2 transcriptional regulator from rhodococcus sp. rha1
69d1tjna_
not modelled 26.7 18 Fold:Chelatase-like
Superfamily:Chelatase
Family:CbiX-like
70c1tjnA_
not modelled 26.7 18 PDB header:lyase
Chain: A: PDB Molecule:sirohydrochlorin cobaltochelatase;
PDBTitle: crystal structure of hypothetical protein af0721 from archaeoglobus2 fulgidus
71c2f78A_
not modelled 26.3 22 PDB header:gene regulation
Chain: A: PDB Molecule:hth-type transcriptional regulator benm;
PDBTitle: benm effector binding domain with its effector benzoate
72c2hxrA_
not modelled 25.7 15 PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional regulator cynr;
PDBTitle: structure of the ligand binding domain of e. coli cynr, a2 transcriptional regulator controlling cyanate metabolism
73c2f7cA_
not modelled 25.4 13 PDB header:gene regulation
Chain: A: PDB Molecule:hth-type transcriptional regulator catm;
PDBTitle: catm effector binding domain with its effector cis,cis-muconate
74c3zu3A_
not modelled 25.1 32 PDB header:oxidoreductase
Chain: A: PDB Molecule:putative reductase ypo4104/y4119/yp_4011;
PDBTitle: structure of the enoyl-acp reductase fabv from yersinia pestis with2 the cofactor nadh (mr, cleaved histag)
75d1mzga_
not modelled 23.8 27 Fold:SufE/NifU
Superfamily:SufE/NifU
Family:SufE-like
76c3kosA_
not modelled 23.4 20 PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional activator ampr;
PDBTitle: structure of the ampr effector binding domain from citrobacter2 freundii
77c3onmB_
not modelled 22.6 21 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator lrha;
PDBTitle: effector binding domain of lysr-type transcription factor rovm from y.2 pseudotuberculosis
78c4ab6A_
not modelled 21.8 9 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, lysr family;
PDBTitle: regulatory domain structure of nmb2055 (metr), c103s c106s mutant, a2 lysr family regulator from n. meningitidis
79d1nn4a_
not modelled 21.7 16 Fold:Ribose/Galactose isomerase RpiB/AlsB
Superfamily:Ribose/Galactose isomerase RpiB/AlsB
Family:Ribose/Galactose isomerase RpiB/AlsB
80c3cz6A_
not modelled 21.6 13 PDB header:protein binding
Chain: A: PDB Molecule:dna-binding protein rap1;
PDBTitle: crystal structure of the rap1 c-terminus
81c3vpjF_
not modelled 21.1 16 PDB header:hydrolase/hydrolase inhibitor
Chain: F: PDB Molecule:tse1-specific immunity protein;
PDBTitle: crystal structure of type vi effector tse1 from pseudomonas aeruginosa2 in complex with immune protein tsi1
82c2de4B_
not modelled 21.1 15 PDB header:hydrolase
Chain: B: PDB Molecule:dibenzothiophene desulfurization enzyme b;
PDBTitle: crystal structure of dszb c27s mutant in complex with biphenyl-2-2 sulfinic acid
83c1wloA_
not modelled 21.1 23 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:sufe protein;
PDBTitle: solution structure of the hypothetical protein from thermus2 thermophilus hb8
84c3k4uA_
not modelled 20.6 12 PDB header:transport protein
Chain: A: PDB Molecule:binding component of abc transporter;
PDBTitle: crystal structure of putative binding component of abc transporter2 from wolinella succinogenes dsm 1740 complexed with lysine
85c3jv9B_
not modelled 20.4 13 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, lysr family;
PDBTitle: the structure of a reduced form of oxyr from n. meningitidis
86c4fgiH_
not modelled 19.8 16 PDB header:hydrolase/hydrolase inhibitor
Chain: H: PDB Molecule:tsi1;
PDBTitle: structure of the effector - immunity system tse1 / tsi1 from2 pseudomonas aeruginosa
87c4e14A_
not modelled 18.4 16 PDB header:hydrolase/hydrolase inhibitor
Chain: A: PDB Molecule:kynurenine formamidase;
PDBTitle: crystal structure of kynurenine formamidase conjugated with2 phenylmethylsulfonyl fluoride
88d2i6ea1
not modelled 18.1 17 Fold:Periplasmic binding protein-like II
Superfamily:Periplasmic binding protein-like II
Family:Phosphate binding protein-like
89c2i6eG_
not modelled 18.1 17 PDB header:structural genomics, unknown function
Chain: G: PDB Molecule:hypothetical protein;
PDBTitle: crystal structure of protein dr0370 from deinococcus radiodurans, pfam2 duf178
90c3hhfB_
not modelled 17.3 18 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, lysr family;
PDBTitle: structure of crga regulatory domain, a lysr-type transcriptional2 regulator from neisseria meningitidis.
91c1zy8M_
not modelled 17.2 40 PDB header:oxidoreductase
Chain: M: PDB Molecule:pyruvate dehydrogenase protein x component,
PDBTitle: the crystal structure of dihydrolipoamide dehydrogenase and2 dihydrolipoamide dehydrogenase-binding protein (didomain)3 subcomplex of human pyruvate dehydrogenase complex.
92c2f5zK_
not modelled 17.2 40 PDB header:oxidoreductase/protein binding
Chain: K: PDB Molecule:pyruvate dehydrogenase protein x component;
PDBTitle: crystal structure of human dihydrolipoamide dehydrogenase2 (e3) complexed to the e3-binding domain of human e3-3 binding protein
93d1vhca_
not modelled 16.4 16 Fold:TIM beta/alpha-barrel
Superfamily:Aldolase
Family:Class I aldolase
94c3pppA_
not modelled 16.3 13 PDB header:transport protein
Chain: A: PDB Molecule:glycine betaine/carnitine/choline-binding protein;
PDBTitle: structures of the substrate-binding protein provide insights into the2 multiple compatible solutes binding specificities of bacillus3 subtilis abc transporter opuc
95c3he8A_
not modelled 15.9 26 PDB header:isomerase
Chain: A: PDB Molecule:ribose-5-phosphate isomerase;
PDBTitle: structural study of clostridium thermocellum ribose-5-phosphate2 isomerase b
96c2wfoA_
not modelled 15.5 19 PDB header:viral protein
Chain: A: PDB Molecule:glycoprotein 1;
PDBTitle: crystal structure of machupo virus envelope glycoprotein2 gp1
97c3k6gA_
not modelled 15.3 15 PDB header:protein binding
Chain: A: PDB Molecule:telomeric repeat-binding factor 2-interacting protein 1;
PDBTitle: crystal structure of rap1 and trf2 complex
98c3mtjA_
not modelled 14.7 15 PDB header:oxidoreductase
Chain: A: PDB Molecule:homoserine dehydrogenase;
PDBTitle: the crystal structure of a homoserine dehydrogenase from thiobacillus2 denitrificans to 2.15a
99c2yu3A_
not modelled 14.2 21 PDB header:transcription
Chain: A: PDB Molecule:dna-directed rna polymerase iii 39 kda
PDBTitle: solution structure of the domain swapped wingedhelix in dna-2 directed rna polymerase iii 39 kda polypeptide

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