PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3fd3A_

Fold library id	PDB Header	Molecule	Title
c3fd3A_	PDB header: transcription regulator	Chain: A: PDB Molecule: chromosome replication initiation inhibitor	PDBTitle: structure of the c-terminal domains of a lysr family2 protein from agrobacterium tumefaciens str. c58.

Links to external resources
Added to library: Tue Mar 16 11:58:36 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R V T L N I A T N A D S L G T W F L D A V S K F T G G S D Y L V N I A V D D Q D H T V E W L R G G R V L A A V T A H D K P V Q G C R V T P L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T S S
S S
T T S
S S
S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G V L R Y H A T A S P D F X A R H F A D G V T P A A L A R A P G L T F N Q K D R L Q A S W I R T A L G E D V S Y P T H W L P S T D G F V K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
T T S
S S T T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . .

Sequence S L A G X G W G L N P V Q L V A E H L A A G R L V E L X P G T P L D I P L Y W Q V N R L A A E R L A G L T A N X V G T A R V V L X P V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
B T S S S S T T
T T T T T T T S B

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	V	T	L	N	I	A	T	N	A	D	S	L	G	T	W	F	L	D	A	V	S	K	F	T	G	G	S	D	Y	L	V	N	I	A	V	D	D	Q	D	H	T	V	E	W	L	R	G	G	R	V	L	A	A	V	T	A	H	D	K	P	V	Q	G	C	R	V	T	P	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T	T											T	S	S										S	S								T	T	S		S					S			S			T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	V	L	R	Y	H	A	T	A	S	P	D	F	X	A	R	H	F	A	D	G	V	T	P	A	A	L	A	R	A	P	G	L	T	F	N	Q	K	D	R	L	Q	A	S	W	I	R	T	A	L	G	E	D	V	S	Y	P	T	H	W	L	P	S	T	D	G	F	V	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			T	T		S						T	T	S					S	S	T	T													S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Sequence	S	L	A	G	X	G	W	G	L	N	P	V	Q	L	V	A	E	H	L	A	A	G	R	L	V	E	L	X	P	G	T	P	L	D	I	P	L	Y	W	Q	V	N	R	L	A	A	E	R	L	A	G	L	T	A	N	X	V	G	T	A	R	V	V	L	X	P	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	S		B															T	S	S			S	S	T	T													T	T	T	T	T	T	T															S	B