PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3up9A_

Fold library id	PDB Header	Molecule	Title
c3up9A_	PDB header: methionine-binding protein	Chain: A: PDB Molecule: putative uncharacterized protein;	PDBTitle: crystal structure of a putative lipoprotein (actodo_00931) from2 actinomyces odontolyticus atcc 17982 at 2.35 a resolution

Links to external resources
Added to library: Sat Jan 28 18:01:07 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D V V T L T V G A T P S P H A K I L T Y I N D N L A A D A G I K L D I V E Y T D Y V Q P N T A L N D G D L D A N F Y Q T V P Y L E N A E K Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T
S S S T T S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F G Y N F E A G E G I H L E P L G V F S N K H K S L D E L P D G G T I G I I S D T A N Q S R A L E L L A T Q G L V S I P E G D V N I N T V T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
G G G
T T
S T T S
S T T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K L K N F D F R E V E G P Q L V R S L D D F D Y A V I N G N F A Q E G G K T I S G D A L V V E S P V D N P A V N V L V W K G D S K K V D A I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
G G G T T T S S
T T
S
T T
T T
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240

Sequence A K L E K L L H S D E V K Q Y I E K T W S D G S V I P A F X

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
S S S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	V	V	T	L	T	V	G	A	T	P	S	P	H	A	K	I	L	T	Y	I	N	D	N	L	A	A	D	A	G	I	K	L	D	I	V	E	Y	T	D	Y	V	Q	P	N	T	A	L	N	D	G	D	L	D	A	N	F	Y	Q	T	V	P	Y	L	E	N	A	E	K	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T	T												T					T									S	S	S									T	T	S		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	G	Y	N	F	E	A	G	E	G	I	H	L	E	P	L	G	V	F	S	N	K	H	K	S	L	D	E	L	P	D	G	G	T	I	G	I	I	S	D	T	A	N	Q	S	R	A	L	E	L	L	A	T	Q	G	L	V	S	I	P	E	G	D	V	N	I	N	T	V	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					S	S		S		G	G	G			T	T								S														T	T	S									S	T	T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	L	K	N	F	D	F	R	E	V	E	G	P	Q	L	V	R	S	L	D	D	F	D	Y	A	V	I	N	G	N	F	A	Q	E	G	G	K	T	I	S	G	D	A	L	V	V	E	S	P	V	D	N	P	A	V	N	V	L	V	W	K	G	D	S	K	K	V	D	A	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	S								G	G	G					T	T	T	S	S												T	T								S						T	T											T	T		T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence	A	K	L	E	K	L	L	H	S	D	E	V	K	Q	Y	I	E	K	T	W	S	D	G	S	V	I	P	A	F	X
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	S													S	S	S	S