PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c4ef2A_

Fold library id	PDB Header	Molecule	Title
c4ef2A_	PDB header: methionine-binding protein	Chain: A: PDB Molecule: pheromone cob1/lipoprotein, yaec family;	PDBTitle: crystal structure of a pheromone cob1 precursor/lipoprotein, yaec2 family (ef2496) from enterococcus faecalis v583 at 2.10 a resolution

Links to external resources
Added to library: Sat Apr 28 13:26:33 2012

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D D S V L K V G A S P V P H A E I L E H V K P L L E K E G V K L E V T T Y T D Y V L P N K A L E S G D I D A N Y F Q H V P F F N E A V K E N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T T T T
S S S S T T S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D Y D F V N A G A I H L E P V G L Y S K K Y K S L Q E I P D G S T I Y V S S S V S D W P R V L T I L E D A G L I T L K E G V D R T T A T F D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
S S G G G
T T
S
G G G T T S
T T
G G G
G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D I D K N T K K L K F N H E S D P A I X T T L Y D N E E G A A V L I N S N F A V D Q G L N P K K D A I A L E K E S S P Y A N I I A V R K E D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G T T
G G G T T
S S
T T
S
S
G G G
G G G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . .

Sequence E N N E N V K K L V K V L R S K E V Q D W I T K K W N G A I V P V X

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S T T T S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	D	S	V	L	K	V	G	A	S	P	V	P	H	A	E	I	L	E	H	V	K	P	L	L	E	K	E	G	V	K	L	E	V	T	T	Y	T	D	Y	V	L	P	N	K	A	L	E	S	G	D	I	D	A	N	Y	F	Q	H	V	P	F	F	N	E	A	V	K	E	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T								T	T	T															T	T									S	S	S	S								T	T	S		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	Y	D	F	V	N	A	G	A	I	H	L	E	P	V	G	L	Y	S	K	K	Y	K	S	L	Q	E	I	P	D	G	S	T	I	Y	V	S	S	S	V	S	D	W	P	R	V	L	T	I	L	E	D	A	G	L	I	T	L	K	E	G	V	D	R	T	T	A	T	F	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T																			S	S		S	S	G	G	G			T	T							S		G	G	G											T	T	S					T	T			G	G	G			G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	I	D	K	N	T	K	K	L	K	F	N	H	E	S	D	P	A	I	X	T	T	L	Y	D	N	E	E	G	A	A	V	L	I	N	S	N	F	A	V	D	Q	G	L	N	P	K	K	D	A	I	A	L	E	K	E	S	S	P	Y	A	N	I	I	A	V	R	K	E	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G					T	T										G	G	G							T	T		S	S												T	T								S				S			G	G	G								G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Sequence	E	N	N	E	N	V	K	K	L	V	K	V	L	R	S	K	E	V	Q	D	W	I	T	K	K	W	N	G	A	I	V	P	V	X
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T													S											T	T	T	S	S