PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3k4uA_

Fold library id	PDB Header	Molecule	Title
c3k4uA_	PDB header: transport protein	Chain: A: PDB Molecule: binding component of abc transporter;	PDBTitle: crystal structure of putative binding component of abc2 transporter from wolinella succinogenes dsm 1740 complexed3 with lysine

Links to external resources
Added to library: Sat Aug 28 19:26:03 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L R G E L R V G L E P G Y L P F E X K D K K G N V I G F D V D L A R E X A K A X G V K L K L V P T S W D G L I P G L V T E K F D I I I S G X

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S T T T
T T T S T
G G G T T S
S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T I S Q E R N L R V N F V E P Y I V V G Q S L L V K K G L E K G V K S Y K D L D K P E L T L V T K F G V S A E Y A A K R L F K N A K L K T Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B
T T S
S
S
T T T T T T
S G G G G
S S
T T S
S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D T E A E A V Q E V L N G K A D X F I F D L P F N V A F X A Q K G Q G Y L V H L D T S L T Y E P L G W A I K K G D P D F L N W L N H F L A Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S S S T T T T T
S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . .

Sequence I K H D G S Y D E L Y E R W F V D T K W L E K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T
S G G G

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	R	G	E	L	R	V	G	L	E	P	G	Y	L	P	F	E	X	K	D	K	K	G	N	V	I	G	F	D	V	D	L	A	R	E	X	A	K	A	X	G	V	K	L	K	L	V	P	T	S	W	D	G	L	I	P	G	L	V	T	E	K	F	D	I	I	I	S	G	X
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S								T	T	S	T	T	T					T	T	T				S														T										G	G	G							T	T	S		S				S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	I	S	Q	E	R	N	L	R	V	N	F	V	E	P	Y	I	V	V	G	Q	S	L	L	V	K	K	G	L	E	K	G	V	K	S	Y	K	D	L	D	K	P	E	L	T	L	V	T	K	F	G	V	S	A	E	Y	A	A	K	R	L	F	K	N	A	K	L	K	T	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B							T	T	S				S		S											T	T	T	T	T	T			S	G	G	G	G			S	S							T	T	S											S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	T	E	A	E	A	V	Q	E	V	L	N	G	K	A	D	X	F	I	F	D	L	P	F	N	V	A	F	X	A	Q	K	G	Q	G	Y	L	V	H	L	D	T	S	L	T	Y	E	P	L	G	W	A	I	K	K	G	D	P	D	F	L	N	W	L	N	H	F	L	A	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S										S	S	S	S																	T	T	T	T	T									S										T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Sequence	I	K	H	D	G	S	Y	D	E	L	Y	E	R	W	F	V	D	T	K	W	L	E	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S											T			S	G	G	G