PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c2ieeB_

Fold library id	PDB Header	Molecule	Title
c2ieeB_	PDB header: structural genomics, unknown function	Chain: B: PDB Molecule: probable abc transporter extracellular-binding	PDBTitle: crystal structure of yckb_bacsu from bacillus subtilis.2 northeast structural genomics consortium target sr574.

Links to external resources
Added to library: Tue Mar 16 12:05:57 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence W E Q I K D K G K I V V A T S G T L Y P T S Y H D T D K L T G Y E V E V V R E A A K R L G L K V E F K E X G I D G X L T A V N S G Q V D A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S
B T T T B
S T T T
S T T T T S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A N D I D V T K D R E E K F A F S T P Y K Y S Y G T A I V R K D D L S G I K T L K D L K G K K A A G A T T V Y X E V A R K Y G A K E V I Y D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
B
T T
S
T T T G G G
S S G G G G T T
S T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N A T N E Q Y L K D V A N G R T D V I L N D Y Y L Q T L A L A A F P D L N I T I H P D I K Y X P N K Q A L V X K K S N A A L Q K K X N E A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T S
T T S S
S S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . .

Sequence K E X S K D G S L T K L S K Q F F N K A D V S K K I D A D V Q D V D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T
T T S
S
B

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	W	E	Q	I	K	D	K	G	K	I	V	V	A	T	S	G	T	L	Y	P	T	S	Y	H	D	T	D	K	L	T	G	Y	E	V	E	V	V	R	E	A	A	K	R	L	G	L	K	V	E	F	K	E	X	G	I	D	G	X	L	T	A	V	N	S	G	Q	V	D	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T								S		B	T	T	T	B									S												T	T	T										S	T	T							T	T	S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	N	D	I	D	V	T	K	D	R	E	E	K	F	A	F	S	T	P	Y	K	Y	S	Y	G	T	A	I	V	R	K	D	D	L	S	G	I	K	T	L	K	D	L	K	G	K	K	A	A	G	A	T	T	V	Y	X	E	V	A	R	K	Y	G	A	K	E	V	I	Y	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S		B							T	T							S											T	T	T	G	G	G		S	S	G	G	G	G	T	T								S									T	T							S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	A	T	N	E	Q	Y	L	K	D	V	A	N	G	R	T	D	V	I	L	N	D	Y	Y	L	Q	T	L	A	L	A	A	F	P	D	L	N	I	T	I	H	P	D	I	K	Y	X	P	N	K	Q	A	L	V	X	K	K	S	N	A	A	L	Q	K	K	X	N	E	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S												T	T	S																			T	T	S	S					S	S														T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Sequence	K	E	X	S	K	D	G	S	L	T	K	L	S	K	Q	F	F	N	K	A	D	V	S	K	K	I	D	A	D	V	Q	D	V	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T										T	T	T			T	T	S				S			B