PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c2o1mB_

Fold library id	PDB Header	Molecule	Title
c2o1mB_	PDB header: structural genomics, unknown function	Chain: B: PDB Molecule: probable amino-acid abc transporter	PDBTitle: crystal structure of the probable amino-acid abc2 transporter extracellular-binding protein ytmk from3 bacillus subtilis. northeast structural genomics4 consortium target sr572

Links to external resources
Added to library: Tue Mar 16 12:56:45 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K V Q T I T V G T G T Q F P N I C F I D E K G D L T G Y D V E L I K E L D K R L P H Y K F T F K T X E F S N L L V S L G Q H K V D I V A H Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T
T T S
S
T T
G G G G G G S
S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence X E K S K E R E K K F L F N K V A Y N H F P L K I T V L Q N N D T I R G I E D L K G K R V I T S A G A L V L K K W N E D N G R P F E I A Y E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
S
S S G G G
T T
T T T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A N E T A N Q L K S G R A D A T I S T P F A V D F Q N K T S T I K E K T V G N V L S N A K V Y F X F N K N E Q T L S D D I D K A L Q E I I D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
S S
G G G

. . . . . . . . . 220 . . . .

Sequence D G T L K R L S L K W L G D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T

Download: PDB structure FASTA sequence
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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	V	Q	T	I	T	V	G	T	G	T	Q	F	P	N	I	C	F	I	D	E	K	G	D	L	T	G	Y	D	V	E	L	I	K	E	L	D	K	R	L	P	H	Y	K	F	T	F	K	T	X	E	F	S	N	L	L	V	S	L	G	Q	H	K	V	D	I	V	A	H	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S			T	T	T					T	T	S				S														T	T										G	G	G						G	G	G	S		S				S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	X	E	K	S	K	E	R	E	K	K	F	L	F	N	K	V	A	Y	N	H	F	P	L	K	I	T	V	L	Q	N	N	D	T	I	R	G	I	E	D	L	K	G	K	R	V	I	T	S	A	G	A	L	V	L	K	K	W	N	E	D	N	G	R	P	F	E	I	A	Y	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															S	S													T	T			S		S	S	G	G	G		T	T																	T	T	T	T			S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	N	E	T	A	N	Q	L	K	S	G	R	A	D	A	T	I	S	T	P	F	A	V	D	F	Q	N	K	T	S	T	I	K	E	K	T	V	G	N	V	L	S	N	A	K	V	Y	F	X	F	N	K	N	E	Q	T	L	S	D	D	I	D	K	A	L	Q	E	I	I	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S	S		S																	S	S																				G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Sequence	D	G	T	L	K	R	L	S	L	K	W	L	G	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T										T