PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3delC_

Fold library id	PDB Header	Molecule	Title
c3delC_	PDB header: protein binding, transport protein	Chain: C: PDB Molecule: arginine binding protein;	PDBTitle: the structure of ct381, the arginine binding protein from the2 periplasm chlamydia trachomatis

Links to external resources
Added to library: Sat Aug 28 18:18:30 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E K F I V G T N A T Y P P F E F V D K R G E V V G F D I D L A R E I S N K L G K T L D V R E F S F D A L I L N L K Q H R I D A V I T G M S I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
B T T T B
T T S
S T
G G G T T S S S
S S B B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T P S R L K E I L M I P Y Y G E E I K H L V L V F K G E N K H P L P L T Q Y R S V A V Q T G T Y Q E A Y L Q S L S E V H I R S F D S T L E V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S S
S
G G G S S
T T S S T T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L M E V M H G K S P V A V L E P S I A Q V V L K D F P A L S T A T I D L P E D Q W V L G Y G I G V A S D R P A L A L K I E A A V Q E I R K E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S S
G G G
T T
G G G
T T
T

. . . . . . . . . 220 . . . . . . . . . 230 . .

Sequence G V L A E L E Q K W G L N N L E H H H H H H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T G G G
S S T T T B

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	K	F	I	V	G	T	N	A	T	Y	P	P	F	E	F	V	D	K	R	G	E	V	V	G	F	D	I	D	L	A	R	E	I	S	N	K	L	G	K	T	L	D	V	R	E	F	S	F	D	A	L	I	L	N	L	K	Q	H	R	I	D	A	V	I	T	G	M	S	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S		B	T	T	T	B				T	T	S				S														T										G	G	G							T	T	S	S	S				S	S	B	B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	P	S	R	L	K	E	I	L	M	I	P	Y	Y	G	E	E	I	K	H	L	V	L	V	F	K	G	E	N	K	H	P	L	P	L	T	Q	Y	R	S	V	A	V	Q	T	G	T	Y	Q	E	A	Y	L	Q	S	L	S	E	V	H	I	R	S	F	D	S	T	L	E	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	S											S								S			S					G	G	G	S	S						T	T	S									S	T	T							S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	M	E	V	M	H	G	K	S	P	V	A	V	L	E	P	S	I	A	Q	V	V	L	K	D	F	P	A	L	S	T	A	T	I	D	L	P	E	D	Q	W	V	L	G	Y	G	I	G	V	A	S	D	R	P	A	L	A	L	K	I	E	A	A	V	Q	E	I	R	K	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	S	S	S													G	G	G		T	T										G	G	G											T	T																		T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Sequence	G	V	L	A	E	L	E	Q	K	W	G	L	N	N	L	E	H	H	H	H	H	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T										T	G	G	G		S	S	T	T	T	B