PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c3pppA_

Fold library id	PDB Header	Molecule	Title
c3pppA_	PDB header: transport protein	Chain: A: PDB Molecule: glycine betaine/carnitine/choline-binding protein;	PDBTitle: structures of the substrate-binding protein provide insights into the2 multiple compatible solutes binding specificities of bacillus3 subtilis abc transporter opuc

Links to external resources
Added to library: Sat May 14 08:59:21 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D T I K I G A Q S M T E S E I V A N M I A Q L I E H D T D L N T A L V K N L G S N Y V Q H Q A M L G G D I D I S A T R Y S G T D L T S T L G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
S T T S
S T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K E A E K D P K K A L N I V Q N E F Q K R F S Y K W F D S Y G F D N T Y A F T V T K K F A E K E H I N T V S D L K K N A S Q Y K L G V D N A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
B
T
S B G G G G G G G G G G
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence W L K R K G D G Y K G F V S T Y G F E F G T T Y P M Q I G L V Y D A V K N G K M D A V L A Y S T D G R I K A Y D L K I L K D D K R F F P P Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S S S S
S
G G G T T S
S T T
T T T
B
T T
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . .

Sequence D C S P V I P E K V L K E H P E L E G V I N K L I G Q I D T E T M Q E L N Y E V D G K L K E P S V V A K E F L E K H H Y F D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B S T T T T T T
T S
T G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	T	I	K	I	G	A	Q	S	M	T	E	S	E	I	V	A	N	M	I	A	Q	L	I	E	H	D	T	D	L	N	T	A	L	V	K	N	L	G	S	N	Y	V	Q	H	Q	A	M	L	G	G	D	I	D	I	S	A	T	R	Y	S	G	T	D	L	T	S	T	L	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	S																			S											S										T	T	S		S													T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	E	A	E	K	D	P	K	K	A	L	N	I	V	Q	N	E	F	Q	K	R	F	S	Y	K	W	F	D	S	Y	G	F	D	N	T	Y	A	F	T	V	T	K	K	F	A	E	K	E	H	I	N	T	V	S	D	L	K	K	N	A	S	Q	Y	K	L	G	V	D	N	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																															S		B																T		S	B	G	G	G	G	G	G	G	G	G	G							T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	W	L	K	R	K	G	D	G	Y	K	G	F	V	S	T	Y	G	F	E	F	G	T	T	Y	P	M	Q	I	G	L	V	Y	D	A	V	K	N	G	K	M	D	A	V	L	A	Y	S	T	D	G	R	I	K	A	Y	D	L	K	I	L	K	D	D	K	R	F	F	P	P	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T		S	S	S	S													S							G	G	G							T	T	S		S						T	T		T					T	T					B		T	T			S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Sequence	D	C	S	P	V	I	P	E	K	V	L	K	E	H	P	E	L	E	G	V	I	N	K	L	I	G	Q	I	D	T	E	T	M	Q	E	L	N	Y	E	V	D	G	K	L	K	E	P	S	V	V	A	K	E	F	L	E	K	H	H	Y	F	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	B													S	T	T							T	T	T	T																T	S															T	G	G	G