PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c2ylnA_

Fold library id	PDB Header	Molecule	Title
c2ylnA_	PDB header: transport protein	Chain: A: PDB Molecule: putative abc transporter, periplasmic binding protein,	PDBTitle: crystal structure of the l-cystine solute receptor of2 neisseria gonorrhoeae in the closed conformation

Links to external resources
Added to library: Sat Dec 17 18:28:57 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A I S G S L I E R I N N K G T V T V G T E G T Y A P F T Y H D K D G K L T G Y D V E V T R A V A E K L G V K V E F K E T Q W D S M M A G L K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T
S T T T
T T S
S T
G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A G R F D V V A N Q V G L T S P E R Q A T F D K S E P Y S W S G A V L V A H N D S N I K S I A D I K G V K T A Q S L T S N Y G E K A K A A G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
S
S S
S
S
S
T T
S
S G G G
T T S
T T S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A Q L V P V D G L A Q S L T L I E Q K R A D A T L N D E L A V L D Y L K K N P N A G V K I V W S A P A D E K V G S G L I V N K G N D E A V A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T S
S T T S S
G G G
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . .

Sequence K F S T A I N E L K A D G T L K K L G E Q F F G K D I S V Q C C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	I	S	G	S	L	I	E	R	I	N	N	K	G	T	V	T	V	G	T	E	G	T	Y	A	P	F	T	Y	H	D	K	D	G	K	L	T	G	Y	D	V	E	V	T	R	A	V	A	E	K	L	G	V	K	V	E	F	K	E	T	Q	W	D	S	M	M	A	G	L	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T										T									S			T	T	T					T	T	S				S														T										G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	G	R	F	D	V	V	A	N	Q	V	G	L	T	S	P	E	R	Q	A	T	F	D	K	S	E	P	Y	S	W	S	G	A	V	L	V	A	H	N	D	S	N	I	K	S	I	A	D	I	K	G	V	K	T	A	Q	S	L	T	S	N	Y	G	E	K	A	K	A	A	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	S		S				S	S					S											S		S											T	T		S			S	G	G	G		T	T	S						T	T	S									T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	Q	L	V	P	V	D	G	L	A	Q	S	L	T	L	I	E	Q	K	R	A	D	A	T	L	N	D	E	L	A	V	L	D	Y	L	K	K	N	P	N	A	G	V	K	I	V	W	S	A	P	A	D	E	K	V	G	S	G	L	I	V	N	K	G	N	D	E	A	V	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S										T	T	S																		S	T	T	S	S									G	G	G										S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Sequence	K	F	S	T	A	I	N	E	L	K	A	D	G	T	L	K	K	L	G	E	Q	F	F	G	K	D	I	S	V	Q	C	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T											S	S