PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3r39A_

Fold library id	PDB Header	Molecule	Title
c3r39A_	PDB header: transport protein	Chain: A: PDB Molecule: putative periplasmic binding protein;	PDBTitle: crystal structure of periplasmic d-alanine abc transporter from2 salmonella enterica

Links to external resources
Added to library: Sat Apr 9 09:13:04 2011

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S I V E G R T L N V A V S P A S P P M L F K S A D G K L Q G I D L E L F S S Y C Q S R H C K L N I T E Y A W D G M L G A V A S G Q A D V A F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
T T T
S S S
S T
T S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S G I S I T D K R K K V I D F S E P Y Y I N S F Y L V S M A N H K I T L N N L N E L N K Y S I G Y P R G M A Y S D L I K N D L E P K G Y Y S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S T T S
S S G G G G G G S
T T S T T G G G T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L S K V K L Y P T Y N E T M A D L K N G N L D L A F I E E P V Y F T F K N K K K M P I E S R Y V F K N V D Q L G I A F K K G S P V R D D F N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
S S T T S
S T S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . .

Sequence L W L K E Q G P Q K I S G I V D S W M K A G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	I	V	E	G	R	T	L	N	V	A	V	S	P	A	S	P	P	M	L	F	K	S	A	D	G	K	L	Q	G	I	D	L	E	L	F	S	S	Y	C	Q	S	R	H	C	K	L	N	I	T	E	Y	A	W	D	G	M	L	G	A	V	A	S	G	Q	A	D	V	A	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	T	T												T	T	T					S	S	S				S														T																				T	S		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	G	I	S	I	T	D	K	R	K	K	V	I	D	F	S	E	P	Y	Y	I	N	S	F	Y	L	V	S	M	A	N	H	K	I	T	L	N	N	L	N	E	L	N	K	Y	S	I	G	Y	P	R	G	M	A	Y	S	D	L	I	K	N	D	L	E	P	K	G	Y	Y	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T							S											T	T	S					S	S	G	G	G	G	G	G	S						T	T	S	T									T	G	G	G	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	S	K	V	K	L	Y	P	T	Y	N	E	T	M	A	D	L	K	N	G	N	L	D	L	A	F	I	E	E	P	V	Y	F	T	F	K	N	K	K	K	M	P	I	E	S	R	Y	V	F	K	N	V	D	Q	L	G	I	A	F	K	K	G	S	P	V	R	D	D	F	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G					S	S										T	T	S		S															T	S																						T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Sequence	L	W	L	K	E	Q	G	P	Q	K	I	S	G	I	V	D	S	W	M	K	A	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T