PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: d2ozza1

Fold library id	Fold	Superfamily	Family
d2ozza1	Periplasmic binding protein-like II	Periplasmic binding protein-like II	Phosphate binding protein-like

Links to external resources
Added to library: Tue Mar 16 11:55:06 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X D N K A L L S H V D I N N V V C A X P L P Y T R L Y E G L A S G L K A Q F D G I P F Y Y A H X R G A D I R V E C L L N G V Y D X A V V S R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S
S S
S T T T T S
S
T T S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L A A E S Y L S Q N N L C I A L E L G P H T Y V G E H Q L I C R K G E S G N V K R V G L D S R S A D Q K I X T D V F F G D S D V E R V D L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T S S S
T T
G G G
T T
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y H E S L Q R I V K G D V D A V I W N V A E N E L T X L G L E A T P L T D D P R F L Q A T E A V V L T R V D D Y P X Q Q L L R A V V D K H A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T T
S
T T
T T

. . . . . . . . . 220 . . . . . . .

Sequence L L A H Q Q R V V S G E Q E P S Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	D	N	K	A	L	L	S	H	V	D	I	N	N	V	V	C	A	X	P	L	P	Y	T	R	L	Y	E	G	L	A	S	G	L	K	A	Q	F	D	G	I	P	F	Y	Y	A	H	X	R	G	A	D	I	R	V	E	C	L	L	N	G	V	Y	D	X	A	V	V	S	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	S	S		S	S										S													T	T	T	T	S								S											T	T	S		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	A	A	E	S	Y	L	S	Q	N	N	L	C	I	A	L	E	L	G	P	H	T	Y	V	G	E	H	Q	L	I	C	R	K	G	E	S	G	N	V	K	R	V	G	L	D	S	R	S	A	D	Q	K	I	X	T	D	V	F	F	G	D	S	D	V	E	R	V	D	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S										T	T	S	S	S									T	T		G	G	G								T	T													T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	H	E	S	L	Q	R	I	V	K	G	D	V	D	A	V	I	W	N	V	A	E	N	E	L	T	X	L	G	L	E	A	T	P	L	T	D	D	P	R	F	L	Q	A	T	E	A	V	V	L	T	R	V	D	D	Y	P	X	Q	Q	L	L	R	A	V	V	D	K	H	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	S																T	T								S							T	T								T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Sequence	L	L	A	H	Q	Q	R	V	V	S	G	E	Q	E	P	S	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T	S	S