Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionA1L3T7
DateTue Jul 30 12:55:19 BST 2013
Unique Job IDad7136f74d5492c2
SequenceMSVRLRFLSQ ... Download FASTA

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:47.656 Y:49.494 Z:93.538
Model (left) based on template c3l6yE_
Top template information
PDB header:cell adhesion
Chain: E: PDB Molecule:catenin delta-1;
PDBTitle: crystal structure of p120 catenin in complex with e-cadherin
Confidence and coverage
Confidence: 98.9% Coverage: 30%
281 residues ( 30% of your sequence) have been modelled with 98.9% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
493 residues ( 53%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MSVRLRFLSQGDAGAVGTVGRSASFAGFSSAQSRRLSKSINRNSVRSRLPAKSSKAYRTL
Secondary structure 
SS confidence 
Disorder  ???????????????????????
??????????????????????????????????
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  RKGSLCLDPRPQQVKKIFDALKRGLREHLCEQQAELDYLCGRHTDTQRGSRLAFYYDLDK
Secondary structure 
SS confidence 
Disorder  ???????????
???????
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  QLRLVERHIRKVEFHISKVDELYEAYCIQWRLRDGASNMQRAFSNSTQSRASRESLQELG
Secondary structure 
SS confidence 
Disorder 
??????
Disorder confidence 
 
   .........190.........200.........210.........220.........230.........240
Sequence  RSLQECLEDMCLIEGTLEGHLGEFQVKMKGLVGYARLCPGDQYEVLMRLGRQRWRLKGRI
Secondary structure 
SS confidence 
Disorder 
?
?
?????
Disorder confidence 
 
   .........250.........260.........270.........280.........290.........300
Sequence  EPDDSQTWDEEERVFVPTVHENLEIKVTELRGLSSMVVGAVTCDVADFFMARPQLVVVDI
Secondary structure 
SS confidence 
Disorder  ????????
???????????
Disorder confidence 
 
   .........310.........320.........330.........340.........350.........360
Sequence  TELGTIKLQLELLWNPLDSECRLVSPSPTGRFSMGSRKGSLYTWTPPSTPSFRDKYYLSL
Secondary structure 
SS confidence 
Disorder 
?
???????????????????????
???
?
?
Disorder confidence 
 
   .........370.........380.........390.........400.........410.........420
Sequence  LQQPVQQSLLLGGPKATSILGYLSDSELQGPRLRSRSQELLEMDSFSSEDPRDTETSTSA
Secondary structure 
SS confidence 
Disorder  ????????????????
??
??????????????????????????????????????
Disorder confidence 
 
   .........430.........440.........450.........460.........470.........480
Sequence  STSDVGFLPVPVGSAACTEEETREGPPPLGLLPGLAHPARGVLVERPGWRDLGGERLALL
Secondary structure 
SS confidence 
Disorder  ????????????????????????????????????????????????????????????
Disorder confidence 
 
   .........490.........500.........510.........520.........530.........540
Sequence  QDAPIHSPMVPRSRKGQEDGDVGDGVEGPVQEVLDLLRSADPAQPQLRELEYQVLGLRER
Secondary structure 
SS confidence 
Disorder  ???????
?????????????????
?
?????????????
Disorder confidence 
 
   .........550.........560.........570.........580.........590.........600
Sequence  LKPRGVQPEPVSAQSLMDCILESFAFLNADLASDELSLFGGSQAPERDSPPPPRPSLKVS
Secondary structure 
SS confidence 
Disorder  ????????????
?????????????????????????????
Disorder confidence 
 
   .........610.........620.........630.........640.........650.........660
Sequence  PSELTAGAPELDTLLTVHLQVCKALLQKLASPNLSRMVEDCLLEEAVQQRQVLEVLSDLD
Secondary structure 
SS confidence 
Disorder  ?????
?
Disorder confidence 
 
   .........670.........680.........690.........700.........710.........720
Sequence  LEQVSKARSVEEIIPQASHRKGGLALWQGCTQPGGVLACPASTLLSQLKKTFLHRVRGKY
Secondary structure 
SS confidence 
Disorder 
????????
Disorder confidence 
 
   .........730.........740.........750.........760.........770.........780
Sequence  PGQLEIVCRRLLEQVVGCGGLLVPAGLQEEQVVTWFQFHSYLQRQSISDLEKHLAQLTKE
Secondary structure 
SS confidence 
Disorder 
?????????????
?
?
Disorder confidence 
 
   .........790.........800.........810.........820.........830.........840
Sequence  VTLIEELSCAGPAKALRKLHGKCLSQLQPLPQTLQAWALLQLDGPPRLCRAARTRLASAA
Secondary structure 
SS confidence 
Disorder 
??
????????????
?
Disorder confidence 
 
   .........850.........860.........870.........880.........890.........900
Sequence  RNKRFREKALLYYTNALNDSDAKVQQAACVALQQLGGIESCEQIVSLCQSDLEAVRVAAR
Secondary structure 
SS confidence 
Disorder  ?????
?
????
Disorder confidence 
 
   .........910.........920.........930........
Sequence  EATLSFGEKGRLAFEKMDKLHSEQEAFCQEADVEITIF
Secondary structure 
SS confidence 
Disorder 
???????????
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered ( 42%)
Alpha helix ( 49%)
Beta strand ( 5%)

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3l6y chain E

3D model

Region: 623 - 906
Aligned: 281
Modelled: 283
Confidence: 98.9%
Identity: 15%
PDB header:cell adhesion
Chain: E: PDB Molecule:catenin delta-1;
PDBTitle: crystal structure of p120 catenin in complex with e-cadherin

Phyre2

PDB 1oyz chain A

3D model

Region: 643 - 903
Aligned: 252
Modelled: 261
Confidence: 98.9%
Identity: 11%
Fold: alpha-alpha superhelix
Superfamily: ARM repeat
Family: PBS lyase HEAT-like repeat

Phyre2

PDB 3ltj chain A

3D model

Region: 677 - 905
Aligned: 186
Modelled: 195
Confidence: 98.8%
Identity: 18%
PDB header:protein binding
Chain: A: PDB Molecule:alpharep-4;
PDBTitle: structure of a new family of artificial alpha helicoidal repeat2 proteins (alpha-rep) based on thermostable heat-like repeats

Phyre2

PDB 3l9t chain A

3D model

Region: 754 - 922
Aligned: 162
Modelled: 169
Confidence: 98.7%
Identity: 14%
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein smu.31;
PDBTitle: the crystal structure of smu.31 from streptococcus mutans ua159

Phyre2

PDB 3b2a chain A

3D model

Region: 752 - 935
Aligned: 184
Modelled: 184
Confidence: 98.6%
Identity: 15%
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the archaeal heat-like repeats protein ton_19372 from thermococcus onnurineus na1

Phyre2

PDB 1te4 chain A

3D model

Region: 787 - 906
Aligned: 111
Modelled: 115
Confidence: 98.6%
Identity: 14%
Fold: alpha-alpha superhelix
Superfamily: ARM repeat
Family: PBS lyase HEAT-like repeat

Phyre2

PDB 2db0 chain B

3D model

Region: 679 - 906
Aligned: 201
Modelled: 209
Confidence: 98.3%
Identity: 11%
PDB header:protein binding
Chain: B: PDB Molecule:253aa long hypothetical protein;
PDBTitle: crystal structure of ph0542

Phyre2

PDB 3c5w chain A

3D model

Region: 683 - 907
Aligned: 206
Modelled: 225
Confidence: 98.3%
Identity: 12%
PDB header:hydrolase
Chain: A: PDB Molecule:pp2a a subunit;
PDBTitle: complex between pp2a-specific methylesterase pme-1 and pp2a core2 enzyme

Phyre2

PDB 3now chain A

3D model

Region: 606 - 910
Aligned: 295
Modelled: 305
Confidence: 98.3%
Identity: 16%
PDB header:protein binding
Chain: A: PDB Molecule:unc-45 protein, sd10334p;
PDBTitle: unc-45 from drosophila melanogaster

Phyre2

PDB 1b3u chain A

3D model

Region: 782 - 906
Aligned: 125
Modelled: 125
Confidence: 98.2%
Identity: 14%
Fold: alpha-alpha superhelix
Superfamily: ARM repeat
Family: HEAT repeat

Phyre2

PDB 4ady chain A

3D model

Region: 635 - 907
Aligned: 242
Modelled: 249
Confidence: 98.2%
Identity: 12%
PDB header:protein binding
Chain: A: PDB Molecule:26s proteasome regulatory subunit rpn2;
PDBTitle: crystal structure of 26s proteasome subunit rpn2

Phyre2

PDB 3nmw chain A

3D model

Region: 670 - 909
Aligned: 238
Modelled: 237
Confidence: 98.1%
Identity: 12%
PDB header:cell adhesion/cell cycle
Chain: A: PDB Molecule:apc variant protein;
PDBTitle: crytal structure of armadillo repeats domain of apc

Phyre2

PDB 3u0r chain A

3D model

Region: 790 - 930
Aligned: 141
Modelled: 141
Confidence: 98.1%
Identity: 16%
PDB header:apoptosis inhibitor
Chain: A: PDB Molecule:apoptosis inhibitor 5;
PDBTitle: helical repeat structure of apoptosis inhibitor 5 reveals protein-2 protein interaction modules

Phyre2

PDB 2z6h chain A

3D model

Region: 782 - 919
Aligned: 138
Modelled: 138
Confidence: 97.9%
Identity: 10%
PDB header:cell adhesion
Chain: A: PDB Molecule:catenin beta-1;
PDBTitle: crystal structure of beta-catenin armadillo repeat region2 and its c-terminal domain

Phyre2

PDB 1xqr chain A

3D model

Region: 771 - 932
Aligned: 162
Modelled: 162
Confidence: 97.9%
Identity: 14%
PDB header:chaperone
Chain: A: PDB Molecule:hspbp1 protein;
PDBTitle: crystal structure of the hspbp1 core domain

Phyre2

PDB 3v6a chain A

3D model

Region: 790 - 930
Aligned: 141
Modelled: 141
Confidence: 97.9%
Identity: 16%
PDB header:apoptosis inhibitor
Chain: A: PDB Molecule:apoptosis inhibitor 5;
PDBTitle: helical repeat structure of apoptosis inhibitor 5 reveals protein-2 protein interaction modules

Phyre2

PDB 1xqr chain A domain 1

3D model

Region: 771 - 927
Aligned: 157
Modelled: 157
Confidence: 97.8%
Identity: 13%
Fold: alpha-alpha superhelix
Superfamily: ARM repeat
Family: HspBP1 domain

Phyre2

PDB 1gw5 chain B

3D model

Region: 716 - 923
Aligned: 208
Modelled: 208
Confidence: 97.7%
Identity: 10%
Fold: alpha-alpha superhelix
Superfamily: ARM repeat
Family: Clathrin adaptor core protein

Phyre2

PDB 3ifq chain B

3D model

Region: 782 - 919
Aligned: 138
Modelled: 138
Confidence: 97.7%
Identity: 13%
PDB header:cell adhesion
Chain: B: PDB Molecule:plakoglobin;
PDBTitle: interction of plakoglobin and beta-catenin with desmosomal2 cadherins

Phyre2

PDB 1jdh chain A

3D model

Region: 782 - 906
Aligned: 125
Modelled: 125
Confidence: 97.7%
Identity: 13%
Fold: alpha-alpha superhelix
Superfamily: ARM repeat
Family: Armadillo repeat

Phyre2

PDB 2ep6 chain A domain 1

3D model

Region: 201 - 315
Aligned: 113
Modelled: 113
Confidence: 95.5%
Identity: 24%
Fold: C2 domain-like
Superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
Family: PLC-like (P variant)

Phyre2

PDB 1urf chain A

3D model

Region: 135 - 198
Aligned: 60
Modelled: 60
Confidence: 94.6%
Identity: 27%
Fold: Long alpha-hairpin
Superfamily: HR1 repeat
Family: HR1 repeat

Phyre2

PDB 1cxz chain B

3D model

Region: 137 - 200
Aligned: 58
Modelled: 58
Confidence: 93.0%
Identity: 22%
Fold: Long alpha-hairpin
Superfamily: HR1 repeat
Family: HR1 repeat

Phyre2

PDB 3l9b chain A

3D model

Region: 225 - 319
Aligned: 95
Modelled: 95
Confidence: 92.8%
Identity: 17%
PDB header:membrane protein
Chain: A: PDB Molecule:otoferlin;
PDBTitle: crystal structure of rat otoferlin c2a

Phyre2

PDB 1sxj chain C domain 1

3D model

Region: 69 - 161
Aligned: 78
Modelled: 78
Confidence: 77.7%
Identity: 13%
Fold: post-AAA+ oligomerization domain-like
Superfamily: post-AAA+ oligomerization domain-like
Family: DNA polymerase III clamp loader subunits, C-terminal domain

Phyre2
1
c3l6yE_
2
d1oyza_
3
c3ltjA_
4
c3l9tA_
5
c3b2aA_
6
d1te4a_
7
c2db0B_
8
c3c5wA_
9
c3nowA_
10
d1b3ua_
11
c4adyA_
12
c3nmwA_
13
c3u0rA_
14
c2z6hA_
15
c1xqrA_
16
c3v6aA_
17
d1xqra1
18
d1gw5b_
19
c3ifqB_
20
d1jdha_
21
22
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24
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d2ep6a1
65
66
67
d1urfa_
68
69
70
71
72
73
74
75
d1cxzb_
76
c3l9bA_
77
78
79
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d1sxjc1
89
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3l6yE_
98.9 15 PDB header:cell adhesion
Chain: E: PDB Molecule:catenin delta-1;
PDBTitle: crystal structure of p120 catenin in complex with e-cadherin
2d1oyza_
98.9 11 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:PBS lyase HEAT-like repeat
3c3ltjA_
98.8 18 PDB header:protein binding
Chain: A: PDB Molecule:alpharep-4;
PDBTitle: structure of a new family of artificial alpha helicoidal repeat2 proteins (alpha-rep) based on thermostable heat-like repeats
4c3l9tA_
98.7 14 PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein smu.31;
PDBTitle: the crystal structure of smu.31 from streptococcus mutans ua159
5c3b2aA_
98.6 15 PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the archaeal heat-like repeats protein ton_19372 from thermococcus onnurineus na1
6d1te4a_
98.6 14 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:PBS lyase HEAT-like repeat
7c2db0B_
98.3 11 PDB header:protein binding
Chain: B: PDB Molecule:253aa long hypothetical protein;
PDBTitle: crystal structure of ph0542
8c3c5wA_
98.3 12 PDB header:hydrolase
Chain: A: PDB Molecule:pp2a a subunit;
PDBTitle: complex between pp2a-specific methylesterase pme-1 and pp2a core2 enzyme
9c3nowA_
98.3 16 PDB header:protein binding
Chain: A: PDB Molecule:unc-45 protein, sd10334p;
PDBTitle: unc-45 from drosophila melanogaster
10d1b3ua_
98.2 14 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:HEAT repeat
11c4adyA_
98.2 12 PDB header:protein binding
Chain: A: PDB Molecule:26s proteasome regulatory subunit rpn2;
PDBTitle: crystal structure of 26s proteasome subunit rpn2
12c3nmwA_
98.1 12 PDB header:cell adhesion/cell cycle
Chain: A: PDB Molecule:apc variant protein;
PDBTitle: crytal structure of armadillo repeats domain of apc
13c3u0rA_
98.1 16 PDB header:apoptosis inhibitor
Chain: A: PDB Molecule:apoptosis inhibitor 5;
PDBTitle: helical repeat structure of apoptosis inhibitor 5 reveals protein-2 protein interaction modules
14c2z6hA_
97.9 10 PDB header:cell adhesion
Chain: A: PDB Molecule:catenin beta-1;
PDBTitle: crystal structure of beta-catenin armadillo repeat region2 and its c-terminal domain
15c1xqrA_
97.9 14 PDB header:chaperone
Chain: A: PDB Molecule:hspbp1 protein;
PDBTitle: crystal structure of the hspbp1 core domain
16c3v6aA_
97.9 16 PDB header:apoptosis inhibitor
Chain: A: PDB Molecule:apoptosis inhibitor 5;
PDBTitle: helical repeat structure of apoptosis inhibitor 5 reveals protein-2 protein interaction modules
17d1xqra1
97.8 13 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:HspBP1 domain
18d1gw5b_
97.7 10 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Clathrin adaptor core protein
19c3ifqB_
97.7 13 PDB header:cell adhesion
Chain: B: PDB Molecule:plakoglobin;
PDBTitle: interction of plakoglobin and beta-catenin with desmosomal2 cadherins
20d1jdha_
97.7 13 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Armadillo repeat
21c2z6gA_
not modelled 97.7 13 PDB header:cell adhesion
Chain: A: PDB Molecule:b-catenin;
PDBTitle: crystal structure of a full-length zebrafish beta-catenin
22c4g3aA_
not modelled 97.6 18 PDB header:cell cycle
Chain: A: PDB Molecule:clip-associating protein;
PDBTitle: crystal structure of mast/orbit n-terminal domain
23d1ee4a_
not modelled 97.6 11 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Armadillo repeat
24c3sl9G_
not modelled 97.5 14 PDB header:signaling protein, protein binding
Chain: G: PDB Molecule:catenin beta-1;
PDBTitle: x-ray structure of beta catenin in complex with bcl9
25c3w3zA_
not modelled 97.5 7 PDB header:protein transport/nuclear protein
Chain: A: PDB Molecule:importin subunit beta-3;
PDBTitle: crystal structure of kap121p bound to rangtp
26c4k92B_
not modelled 97.5 11 PDB header:structural protein
Chain: B: PDB Molecule:clip-associating protein 1;
PDBTitle: a cryptic tog domain with a distinct architecture underlies clasp-2 dependent bipolar spindle formation
27c3slaC_
not modelled 97.5 13 PDB header:signaling protein
Chain: C: PDB Molecule:catenin beta-1;
PDBTitle: x-ray structure of first four repeats of human beta-catenin
28c3gq2B_
not modelled 97.4 16 PDB header:transport protein
Chain: B: PDB Molecule:general vesicular transport factor p115;
PDBTitle: crystal structure of the dimer of the p115 tether globular head domain
29d1xm9a1
not modelled 97.4 14 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Plakophilin 1 helical region
30c3bctA_
not modelled 97.4 14 PDB header:armadillo repeat
Chain: A: PDB Molecule:beta-catenin;
PDBTitle: the armadillo repeat region from murine beta-catenin
31c3sl9A_
not modelled 97.3 13 PDB header:signaling protein, protein binding
Chain: A: PDB Molecule:catenin beta-1;
PDBTitle: x-ray structure of beta catenin in complex with bcl9
32c3slaB_
not modelled 97.3 13 PDB header:signaling protein
Chain: B: PDB Molecule:catenin beta-1;
PDBTitle: x-ray structure of first four repeats of human beta-catenin
33c3l6yA_
not modelled 97.3 13 PDB header:cell adhesion
Chain: A: PDB Molecule:catenin delta-1;
PDBTitle: crystal structure of p120 catenin in complex with e-cadherin
34c3sl9E_
not modelled 97.2 10 PDB header:signaling protein, protein binding
Chain: E: PDB Molecule:catenin beta-1;
PDBTitle: x-ray structure of beta catenin in complex with bcl9
35c2of3A_
not modelled 97.2 11 PDB header:structural protein, cell cycle
Chain: A: PDB Molecule:zyg-9;
PDBTitle: tog domain structure from c.elegans zyg9
36c3sl9B_
not modelled 97.2 10 PDB header:signaling protein, protein binding
Chain: B: PDB Molecule:catenin beta-1;
PDBTitle: x-ray structure of beta catenin in complex with bcl9
37d1v18a1
not modelled 97.2 17 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Armadillo repeat
38c3oqsA_
not modelled 97.2 13 PDB header:protein transport
Chain: A: PDB Molecule:importin subunit alpha-2;
PDBTitle: crystal structure of importin-alpha bound to a clic4 nls peptide
39d1q1sc_
not modelled 97.1 11 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Armadillo repeat
40c3slaD_
not modelled 97.1 13 PDB header:signaling protein
Chain: D: PDB Molecule:catenin beta-1;
PDBTitle: x-ray structure of first four repeats of human beta-catenin
41c3slaA_
not modelled 97.1 11 PDB header:signaling protein
Chain: A: PDB Molecule:catenin beta-1;
PDBTitle: x-ray structure of first four repeats of human beta-catenin
42c2ynsA_
not modelled 97.1 9 PDB header:transport protein
Chain: A: PDB Molecule:importin subunit alpha-1a;
PDBTitle: rimp_alpha_b54nls
43c3tjzB_
not modelled 97.0 11 PDB header:protein transport/protein binding
Chain: B: PDB Molecule:coatomer subunit gamma;
PDBTitle: crystal structure of arf1 bound to the gamma/zeta-cop core complex
44c3slaE_
not modelled 97.0 12 PDB header:signaling protein
Chain: E: PDB Molecule:catenin beta-1;
PDBTitle: x-ray structure of first four repeats of human beta-catenin
45d1lrva_
not modelled 97.0 16 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Leucine-rich repeat variant
46c2c1tA_
not modelled 97.0 10 PDB header:protein transport/membrane protein
Chain: A: PDB Molecule:importin alpha subunit;
PDBTitle: structure of the kap60p:nup2 complex
47c1pjmB_
not modelled 96.9 13 PDB header:protein transport
Chain: B: PDB Molecule:importin alpha-2 subunit;
PDBTitle: mouse importin alpha-bipartite nls from human2 retinoblastoma protein complex
48c4db8B_
not modelled 96.9 15 PDB header:de novo protein
Chain: B: PDB Molecule:armadillo-repeat protein;
PDBTitle: designed armadillo-repeat protein
49c1w63A_
not modelled 96.9 11 PDB header:endocytosis
Chain: A: PDB Molecule:adapter-related protein complex 1 gamma 1
PDBTitle: ap1 clathrin adaptor core
50d1u6gc_
not modelled 96.8 15 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:HEAT repeat
51c4hxtA_
not modelled 96.8 16 PDB header:de novo protein
Chain: A: PDB Molecule:de novo protein or329;
PDBTitle: crystal structure of engineered protein. northeast structural genomics2 consortium target or329
52c3t7uA_
not modelled 96.7 14 PDB header:cell adhesion
Chain: A: PDB Molecule:adenomatous polyposis coli protein;
PDBTitle: a new crytal structure of apc-arm
53c2w3cA_
not modelled 96.7 18 PDB header:transport protein
Chain: A: PDB Molecule:general vesicular transport factor p115;
PDBTitle: globular head region of the human general vesicular2 transport factor p115
54c4db9A_
not modelled 96.7 18 PDB header:de novo protein
Chain: A: PDB Molecule:armadillo repeat protein, yiiim3aiii;
PDBTitle: designed armadillo repeat protein (yiiim3aiii)
55c4a0cB_
not modelled 96.6 10 PDB header:cell cycle
Chain: B: PDB Molecule:cullin-associated nedd8-dissociated protein 1;
PDBTitle: structure of the cand1-cul4b-rbx1 complex
56c3tt9A_
not modelled 96.5 11 PDB header:cell adhesion
Chain: A: PDB Molecule:plakophilin-2;
PDBTitle: crystal structure of the stable degradation fragment of human2 plakophilin 2 isoform a (pkp2a) c752r variant
57c3nmzB_
not modelled 96.5 13 PDB header:cell adhesion/cell cycle
Chain: B: PDB Molecule:apc variant protein;
PDBTitle: crytal structure of apc complexed with asef
58c2jdqB_
not modelled 96.4 12 PDB header:protein transport
Chain: B: PDB Molecule:importin alpha-1 subunit;
PDBTitle: c-terminal domain of influenza a virus polymerase pb22 subunit in complex with human importin alpha5
59c4ffbC_
not modelled 96.0 9 PDB header:hydrolase
Chain: C: PDB Molecule:protein stu2;
PDBTitle: a tog:alpha/beta-tubulin complex structure reveals conformation-based2 mechanisms for a microtubule polymerase
60c4i2wA_
not modelled 96.0 10 PDB header:chaperone/protein binding
Chain: A: PDB Molecule:protein unc-45;
PDBTitle: crystal structure of the myosin chaperone unc-45 from c.elegans in2 complex with a hsp70 peptide
61d1ibrb_
not modelled 95.9 21 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Armadillo repeat
62c2ot8B_
not modelled 95.9 13 PDB header:transport protein
Chain: B: PDB Molecule:transportin-1;
PDBTitle: karyopherin beta2/transportin-hnrnpm nls complex
63c1m5nS_
not modelled 95.8 10 PDB header:protein transport
Chain: S: PDB Molecule:importin beta-1 subunit;
PDBTitle: crystal structure of heat repeats (1-11) of importin b2 bound to the non-classical nls(67-94) of pthrp
64d2ep6a1
95.5 24 Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:PLC-like (P variant)
65c2qnaA_
not modelled 95.4 15 PDB header:transport protein
Chain: A: PDB Molecule:importin subunit beta-1;
PDBTitle: crystal structure of human importin-beta (127-876) in complex with the2 ibb-domain of snurportin1 (1-65)
66c2qk1A_
not modelled 95.3 11 PDB header:protein binding
Chain: A: PDB Molecule:protein stu2;
PDBTitle: structural basis of microtubule plus end tracking by2 xmap215, clip-170 and eb1
67d1urfa_
94.6 27 Fold:Long alpha-hairpin
Superfamily:HR1 repeat
Family:HR1 repeat
68d1gmia_
not modelled 94.4 13 Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:PLC-like (P variant)
69c2qk2A_
not modelled 94.4 14 PDB header:protein binding
Chain: A: PDB Molecule:lp04448p;
PDBTitle: structural basis of microtubule plus end tracking by xmap215, clip-1702 and eb1
70c2jkrL_
not modelled 94.2 17 PDB header:endocytosis
Chain: L: PDB Molecule:ap-2 complex subunit alpha-2;
PDBTitle: ap2 clathrin adaptor core with dileucine peptide rm(2 phosphos)qikrllse
71d2bpta1
not modelled 94.1 15 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Armadillo repeat
72d1wa5b_
not modelled 93.9 18 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Armadillo repeat
73c1wa5B_
not modelled 93.9 18 PDB header:nuclear transport
Chain: B: PDB Molecule:importin alpha subunit;
PDBTitle: crystal structure of the exportin cse1p complexed with its2 cargo (kap60p) and rangtp
74c1lshA_
not modelled 93.7 11 PDB header:lipid binding protein
Chain: A: PDB Molecule:lipovitellin (lv-1n, lv-1c);
PDBTitle: lipid-protein interactions in lipovitellin
75d1cxzb_
93.0 22 Fold:Long alpha-hairpin
Superfamily:HR1 repeat
Family:HR1 repeat
76c3l9bA_
92.8 17 PDB header:membrane protein
Chain: A: PDB Molecule:otoferlin;
PDBTitle: crystal structure of rat otoferlin c2a
77d1lsha1
not modelled 91.4 11 Fold:alpha-alpha superhelix
Superfamily:Lipovitellin-phosvitin complex, superhelical domain
Family:Lipovitellin-phosvitin complex, superhelical domain
78d1qgra_
not modelled 90.6 15 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Armadillo repeat
79c3jzyA_
not modelled 90.5 14 PDB header:endocytosis
Chain: A: PDB Molecule:intersectin 2;
PDBTitle: crystal structure of human intersectin 2 c2 domain
80d1qbkb_
not modelled 90.3 15 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Armadillo repeat
81d1wfja_
not modelled 87.3 21 Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:Synaptotagmin-like (S variant)
82d1rlwa_
not modelled 85.9 18 Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:PLC-like (P variant)
83c3opbA_
not modelled 85.7 13 PDB header:protein binding
Chain: A: PDB Molecule:swi5-dependent ho expression protein 4;
PDBTitle: crystal structure of she4p
84c2dmhA_
not modelled 85.5 16 PDB header:lipid binding protein
Chain: A: PDB Molecule:myoferlin;
PDBTitle: solution structure of the first c2 domain of human myoferlin
85d2nq3a1
not modelled 85.5 20 Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:PLC-like (P variant)
86c2nq3A_
not modelled 85.5 20 PDB header:ligase
Chain: A: PDB Molecule:itchy homolog e3 ubiquitin protein ligase;
PDBTitle: crystal structure of the c2 domain of human itchy homolog2 e3 ubiquitin protein ligase
87d2cjsa1
not modelled 78.2 16 Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:PLC-like (P variant)
88d1sxjc1
77.7 13 Fold:post-AAA+ oligomerization domain-like
Superfamily:post-AAA+ oligomerization domain-like
Family:DNA polymerase III clamp loader subunits, C-terminal domain
89d2cm5a1
not modelled 75.1 20 Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:Synaptotagmin-like (S variant)
90c4gmnA_
not modelled 74.9 22 PDB header:rna binding protein
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: structural basis of rpl5 recognition by syo1
91c2nsqA_
not modelled 72.6 18 PDB header:ligase
Chain: A: PDB Molecule:e3 ubiquitin-protein ligase nedd4-like protein;
PDBTitle: crystal structure of the c2 domain of the human e3 ubiquitin-protein2 ligase nedd4-like protein
92c3sqgG_
not modelled 72.4 58 PDB header:transferase
Chain: G: PDB Molecule:methyl coenzyme m reductase, alpha subunit;
PDBTitle: crystal structure of a methyl-coenzyme m reductase purified from black2 sea mats
93c3kwtA_
not modelled 70.2 16 PDB header:metal binding protein
Chain: A: PDB Molecule:munc13-1;
PDBTitle: munc13-1 c2b-domain, calcium-free
94c2raxY_
not modelled 68.1 25 PDB header:cell cycle
Chain: Y: PDB Molecule:borealin;
PDBTitle: crystal structure of borealin (20-78) bound to survivin (1-120)
95c1hbuD_
not modelled 67.4 75 PDB header:methanogenesis
Chain: D: PDB Molecule:methyl-coenzyme m reductase i alpha subunit;
PDBTitle: methyl-coenzyme m reductase in the mcr-red1-silent state in2 complex with coenzyme m
96c1deqO_
not modelled 66.6 9 PDB header:blood clotting
Chain: O: PDB Molecule:fibrinogen (beta chain);
PDBTitle: the crystal structure of modified bovine fibrinogen (at ~42 angstrom resolution)
97c2fk9A_
not modelled 65.7 18 PDB header:transferase
Chain: A: PDB Molecule:protein kinase c, eta type;
PDBTitle: human protein kinase c, eta
98d1wa5c_
not modelled 65.6 10 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Armadillo repeat
99c2ke4A_
not modelled 65.0 10 PDB header:membrane protein
Chain: A: PDB Molecule:cdc42-interacting protein 4;
PDBTitle: the nmr structure of the tc10 and cdc42 interacting domain2 of cip4
100d1hbna1
not modelled 64.7 75 Fold:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
Superfamily:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
Family:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
101c2l1lB_
not modelled 64.6 10 PDB header:nuclear protein
Chain: B: PDB Molecule:exportin-1;
PDBTitle: nmr solution structure of the phi0 pki nes peptide in complex with2 crm1-rangtp
102c1e6yA_
not modelled 64.5 50 PDB header:oxidoreductase
Chain: A: PDB Molecule:methyl-coenzyme m reductase subunit alpha;
PDBTitle: methyl-coenzyme m reductase from methanosarcina barkeri
103d1e6ya1
not modelled 64.0 50 Fold:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
Superfamily:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
Family:Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
104d2vmha1
not modelled 60.9 26 Fold:Galactose-binding domain-like
Superfamily:Galactose-binding domain-like
Family:NPCBM-like
105d2iuba1
not modelled 60.6 21 Fold:CorA soluble domain-like
Superfamily:CorA soluble domain-like
Family:CorA soluble domain-like
106c3vwaA_
not modelled 60.0 17 PDB header:hydrolase
Chain: A: PDB Molecule:cytoplasmic export protein 1;
PDBTitle: crystal structure of cex1p
107c2qfaB_
not modelled 59.7 25 PDB header:cell cycle/cell cycle/cell cycle
Chain: B: PDB Molecule:borealin;
PDBTitle: crystal structure of a survivin-borealin-incenp core complex
108c1dvpA_
not modelled 59.2 16 PDB header:transferase
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine
PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction
109d1euma_
not modelled 58.5 19 Fold:Ferritin-like
Superfamily:Ferritin-like
Family:Ferritin
110c3m7fB_
not modelled 57.4 16 PDB header:signaling protein/ligase
Chain: B: PDB Molecule:e3 ubiquitin-protein ligase nedd4;
PDBTitle: crystal structure of the nedd4 c2/grb10 sh2 complex
111d1s94a_
not modelled 56.5 15 Fold:STAT-like
Superfamily:t-snare proteins
Family:t-snare proteins
112c1s94A_
not modelled 56.5 15 PDB header:endocytosis/exocytosis
Chain: A: PDB Molecule:s-syntaxin;
PDBTitle: crystal structure of the habc domain of neuronal syntaxin from the2 squid loligo pealei
113c3gebC_
not modelled 55.2 24 PDB header:hydrolase
Chain: C: PDB Molecule:eyes absent homolog 2;
PDBTitle: crystal structure of edeya2
114c2vckC_
not modelled 54.6 10 PDB header:oxidoreductase
Chain: C: PDB Molecule:cyanobacterial phycoerythrobilin;
PDBTitle: structure of phycoerythrobilin synthase pebs from the2 cyanophage p-ssm2 in complex with the bound substrate3 biliverdin ixa
115c3ripA_
not modelled 53.4 16 PDB header:structural protein
Chain: A: PDB Molecule:gamma-tubulin complex component 4;
PDBTitle: crystal structure of human gamma-tubulin complex protein 4 (gcp4)
116d1byna_
not modelled 51.5 15 Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:Synaptotagmin-like (S variant)
117d2cjta1
not modelled 50.3 14 Fold:C2 domain-like
Superfamily:C2 domain (Calcium/lipid-binding domain, CaLB)
Family:PLC-like (P variant)
118c3qx3B_
not modelled 50.1 39 PDB header:isomerase/dna/isomerase inhibitor
Chain: B: PDB Molecule:dna topoisomerase 2-beta;
PDBTitle: human topoisomerase iibeta in complex with dna and etoposide
119c4ev6E_
not modelled 49.9 14 PDB header:metal transport
Chain: E: PDB Molecule:magnesium transport protein cora;
PDBTitle: the complete structure of cora magnesium transporter from2 methanocaldococcus jannaschii
120c3rpfC_
not modelled 49.3 21 PDB header:transferase
Chain: C: PDB Molecule:molybdopterin converting factor, subunit 1 (moad);
PDBTitle: protein-protein complex of subunit 1 and 2 of molybdopterin-converting2 factor from helicobacter pylori 26695

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