Return to main results Retrieve Phyre Job Id

Job DescriptionA1L3T7
Confidence34.04%DateTue Jul 30 12:55:19 BST 2013
Rank140Aligned Residues38
% Identity29%Templatec4fm9A_
PDB info PDB header:isomerase/dnaChain: A: PDB Molecule:dna topoisomerase 2-alpha; PDBTitle: human topoisomerase ii alpha bound to dna
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   208.210.........220.........230.........240.........250.........260.......
Predicted Secondary structure 








































Query SS confidence 



























































Query Sequence  MKGLVGYARLCPGDQYEVLMRLGRQRWRLKGRIEPDDSQTWDEEERVFVPTVHENLEIKV
Query Conservation 



 





 

 


    
 



  
 
     
 

 

 

 
       


Alig confidence 






....






....

















.................


Template Conservation   
   

.... 
 
  
....
 
    

         .................
 
Template Sequence  LPSYKNF. . . . KGTIEEL. . . . APNQYVISGEVAILNSTT. . . . . . . . . . . . . . . . . IEI
Template Known Secondary structure 



TT
....
S....TT




SS
.................
Template Predicted Secondary structure 






....
....





.................
Template SS confidence 



























































   889890..... ....900.. .......910.........920 ...
 
   268.270
Predicted Secondary structure 
Query SS confidence 


Query Sequence  TEL
Query Conservation 

 
Alig confidence 


Template Conservation 


Template Sequence  SEL
Template Known Secondary structure 


Template Predicted Secondary structure 
Template SS confidence 


   924..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D