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Job DescriptionA1L3T7
Confidence98.18%DateTue Jul 30 12:55:19 BST 2013
Rank11Aligned Residues242
% Identity12%Templatec4adyA_
PDB info PDB header:protein bindingChain: A: PDB Molecule:26s proteasome regulatory subunit rpn2; PDBTitle: crystal structure of 26s proteasome subunit rpn2
Resolution2.70 Å
Model Dimensions (Å)X:57.659 Y:49.797 Z:39.250

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   635....640...... ...650.........660.........670....... ..680......
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Query Sequence  SRMVEDCLLEEA. . . . VQQRQVLEVLSDLDLEQVSKARSVEEIIPQA. . . . SHRKGGLAL
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Template Sequence  LLHGASLGIGLAAXGSANIEVYEALKEVLYNDSATSGEAAALGXGLCXLGTGKPEAIHDX
Template Known Secondary structure  STT


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   442.......450.........460.........470.........480.........490.........500.
 
   687..690.........700.........710.........720.........730.........740......
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Query Sequence  WQGCTQPGGVLACPASTLLSQLKKTFLHRVRGKYPGQLEIVCRRLLEQVVGCGGLLVPAG
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Template Sequence  FTYSQETQ. . . HGNITRGL. . . . . . . AVGLALINYGRQELADDLITKXLASDESL. . . . .
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GGGG
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   502....... 510....... ..520.........530.........540......
 
   747..750.........760.........770. ........780.........790.........800..
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Query Sequence  LQEEQVVTWFQFHSYLQRQSISDLE. . . . KHLAQLTKEVTLIEELSCAGPAKALRKLHGK
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Template Sequence  . . . . . . . . . . . . . . . LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIAL
Template Known Secondary structure  ...............TTTS


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   547..550.........560.........570.........580.........590.
 
   803......810.........820.........830.........840.........850.........860..
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Query Sequence  CLSQLQPLPQTLQAWALLQLDGPPRLCRAARTRLASAARNKRFREKALLYYTNALNDSDA
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Template Sequence  GFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL. QSAIDVLDPLTKDPVD
Template Known Secondary structure  TSSS
SSTTTGGG
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   592.......600.........610.........620.........630.... .....640.........650
 
   863......870....... ..880.........890........ .900.......
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Query Sequence  KVQQAACVALQQLGG. . . . . . . . . . IESCEQIVSLCQSDLEAVRVA. . . . AREATLSFG
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Template Sequence  FVRQAAXIALSXILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIXNAG
Template Known Secondary structure  STT

TTT
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   651........660.........670.........680.........690.........700.........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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