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Job DescriptionA1L3T7
Confidence96.50%DateTue Jul 30 12:55:19 BST 2013
Rank56Aligned Residues158
% Identity11%Templatec3tt9A_
PDB info PDB header:cell adhesionChain: A: PDB Molecule:plakophilin-2; PDBTitle: crystal structure of the stable degradation fragment of human2 plakophilin 2 isoform a (pkp2a) c752r variant
Resolution1.55 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   776...780.........790. ........800....... ..810.........820.....
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Query Sequence  QLTKEVTLIEELSCAG. . PAKALRKLHGKCLSQL. . . . . . . . QPLPQTLQAWALLQLDGP
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Template Sequence  EMTLE. RAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQN
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   350.... .....360.........370.........380.........390.........400........
 
   826...830.........840..... ....850......... 860.........870........
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Query Sequence  PRLCRAARTRLASAARNKRF. . . . . . REKALLYYTNALND. SDAKVQQAACVALQQLGGI
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Template Sequence  EDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN
Template Known Secondary structure  TT
TT


TS
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   409410.........420.........430.........440.........450.........460........
 
   879880........ .890.........900...... ...910
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Query Sequence  ESCEQIVSLC. . . . . . . . . . . . . . . . . . . . . . . . . QSDLEAVRVAAREATLSF. . . GEKG
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Template Sequence  DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADG
Template Known Secondary structure  GGGT


GGG




TT

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   469470.........480.........490.........500.........510.........520........
 
   911..... ...920.........930....
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Query Sequence  RLAFEK. . . . MDKLHSEQEAFCQEADVE
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Template Sequence  RKAMRRCDGLIDSLVHYVRGTIADYQPD
Template Known Secondary structure  TSTTTT
TT
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   529530.........540.........550......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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