Return to main results Retrieve Phyre Job Id

Job DescriptionA1L3T7
Confidence97.13%DateTue Jul 30 12:55:19 BST 2013
Rank42Aligned Residues196
% Identity9%Templatec2ynsA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:importin subunit alpha-1a; PDBTitle: rimp_alpha_b54nls
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   711........720.........730.........740.........750.........760.........770
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Query Sequence  TFLHRVRGKYPGQLEIVCRRLLEQVVGCGGLLVPAGLQEEQVVTWFQFHSYLQRQSISDL
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Template Conservation                                                              
Template Sequence  TDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQT
Template Known Secondary structure  TSSSTT
GGG
S
TTS
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   260.........270.........280.........290.........300.........310.........
 
   771........780.........790.........800.........810 .........820..
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Query Sequence  EKHLAQLTKEVTLIEELSCAGPAKALRKLHGKCLSQLQPL. . . . . . . . PQTLQAWALLQL
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Template Conservation             
                                          
  

 
Template Sequence  QCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ
Template Known Secondary structure  TTTS


TTS
TT
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   320.........330.........340.........350.........360.........370.........
 
   823......830.........840........ .850.........860.........870....
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Query Sequence  DGPPRLCRAARTRLASAARNKRFREK. . . . . . . ALLYYTNALNDSDAKVQQAACVALQQ.
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Template Sequence  TAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENI
Template Known Secondary structure  S


TT
GGGSS
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   380.........390.........400.........410.........420.........430.........
 
   875....880.........890.........900......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . LGGIESCEQIVSLCQSDLEAVRVAAREATLSF
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Template Conservation                       
        
  
       
   
  

   
Template Sequence  LKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY
Template Known Secondary structure  TT
SS
TTGGG
S
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   440.........450.........460.........470.........480.........490..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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