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Job DescriptionA1L3T7
Confidence96.92%DateTue Jul 30 12:55:19 BST 2013
Rank47Aligned Residues151
% Identity13%Templatec1pjmB_
PDB info PDB header:protein transportChain: B: PDB Molecule:importin alpha-2 subunit; PDBTitle: mouse importin alpha-bipartite nls from human2 retinoblastoma protein complex
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   755....760.........770.........780.........790.........800.........810..
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Query Sequence  WFQFHSYLQRQSISDLEKHLAQLTKEVTLIEELSCAGPAKALRKLHGKCLSQLQPLPQ. .
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Template Sequence  ALRAIGNIVTGTDEQTQKVIDAGALAV. FPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ
Template Known Secondary structure  TTS
TTGGGG.TT
SSTTS
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   313......320.........330......... 340.........350.........360.........370.
 
   813......820.........830.........840........ .850.........
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Query Sequence  . . . . . . TLQAWALLQLDGPPRLCRAARTRLASAARNKRFREK. . . . . . . ALLYYTNALND
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Template Sequence  QVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSA
Template Known Secondary structure  TT
SS
S
TT
TT
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   372.......380.........390.........400.........410.........420.........430.
 
   860.........870.... .....880.........890.........900..
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Query Sequence  SDAKVQQAACVALQQ. . . . . . . . . . . . . . . . . LGGIESCEQIVSLCQSDLEAVRVAAREA
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Template Sequence  KDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNL
Template Known Secondary structure  S
TTTTTTSTGGGG
SS
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   432.......440.........450.........460.........470.........480.........490.
 
   903...
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Query Sequence  TLSF
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Template Conservation 
   
Template Sequence  IEKY
Template Known Secondary structure  S
Template Predicted Secondary structure 
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   492...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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