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Job DescriptionA1L3T7
Confidence96.86%DateTue Jul 30 12:55:19 BST 2013
Rank49Aligned Residues289
% Identity11%Templatec1w63A_
PDB info PDB header:endocytosisChain: A: PDB Molecule:adapter-related protein complex 1 gamma 1 PDBTitle: ap1 clathrin adaptor core
Resolution4.0 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   619620.........630..... ....640...... ...650.........660.........670...
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Query Sequence  LQVCKALLQKLASPNLS. RMVEDCLLEEA. . . . VQQRQVLEVLSDLDLEQVSKARSVEEI
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Template Sequence  LLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALC
Template Known Secondary structure  S
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S

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   101........110.........120.........130.........140.........150.........160
 
   674..... 680.........690.........700.........710.........720.......
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Query Sequence  IPQASH. . . . . . RKGGLALWQGCTQPGGVLACPASTLLSQLKKTFLHRVRGKYPGQLEIV
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Template Sequence  AVHVIRKVPELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDML. AHFRKLVPQL
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GGGGGGGGGGTTTSTT




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   161........170.........180.........190.........200......... 210.........
 
   728.730.........740.........750. ........760.........770.........780.....
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Query Sequence  CRRLLEQVVGCGGLLVPAGLQEEQ. . VVTWFQFHSYLQRQSISDLEKHLAQLTKEVTLIE
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Template Sequence  VRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTE
Template Known Secondary structure  S


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   220.........230.........240.........250.........260.........270.........
 
   786...790.........800......... 810.........820.........830.........840. .
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Query Sequence  ELSCAGPAKALRKLHGKCLSQLQP. . LPQTLQAWALLQLDGPPRLCRAARTRLASAAR. N
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Template Sequence  TSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTD
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   280.........290.........300.........310.........320.........330.........
 
   843......850.........860.........870.........880... ......890........
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Query Sequence  KRFREKALLYYTNALNDSDAKVQQAACVALQQLGGIESCEQ. . . . IVSLCQSDLEAVRVA
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Template Sequence  HNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKAD
Template Known Secondary structure  GGGGGGSS


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   340.........350.........360.........370.........380.........390.........
 
   899900........
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Query Sequence  AREATLSFGE
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Template Sequence  CASGIFLAAE
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   400.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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