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Job DescriptionA1L3T7
Confidence96.96%DateTue Jul 30 12:55:19 BST 2013
Rank46Aligned Residues199
% Identity10%Templatec2c1tA_
PDB info PDB header:protein transport/membrane proteinChain: A: PDB Molecule:importin alpha subunit; PDBTitle: structure of the kap60p:nup2 complex
Resolution2.6 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   706...710.........720.........730.........740.........750.........760.....
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Query Sequence  SQLKKTFLHRVRGKYPGQLEIVCRRLLEQVVGCGGLLVPAGLQEEQVVTWFQFHSYLQRQ
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Template Sequence  TETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQ. TPALRAVGNIVTG
Template Known Secondary structure  SS
TTTT
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   271........280.........290.........300.........310...... ...320.........
 
   766...770.........780.........790.........800....... ..810.......
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Query Sequence  SISDLEKHLAQLTKEVTLIEELSCAGPAKALRKLHGKCLSQL. . . . . . . . QPLPQTLQAW
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Template Sequence  NDLQTQVVINAGVLPA. LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL
Template Known Secondary structure 
TT.TT
SSTTTTS
TT
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   330.........340..... ....350.........360.........370.........380........
 
   818.820.........830.........840........ .850.........860........
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Query Sequence  ALLQLDGPPRLCRAARTRLASAARNKRFREK. . . . . . . . . ALLYYTNALNDSDAKVQQAA
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Template Sequence  VKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVT
Template Known Secondary structure  S
GGGTT
TT
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   389390.........400.........410.........420.........430.........440........
 
   869870.... .....880.........890.........900......
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Query Sequence  CVALQQ. . . . . . . . . . . . . . . . . . . . . . LGGIESCEQIVSLCQSDLEAVRVAAREATLSF
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Template Sequence  LDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETY
Template Known Secondary structure  TT
S

TTGGGSSS
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   449450.........460.........470.........480.........490.........500........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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