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Job DescriptionA1L3T7
Confidence95.94%DateTue Jul 30 12:55:19 BST 2013
Rank62Aligned Residues131
% Identity13%Templatec2ot8B_
PDB info PDB header:transport proteinChain: B: PDB Molecule:transportin-1; PDBTitle: karyopherin beta2/transportin-hnrnpm nls complex
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   776...780.........790.........800.........
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Query Sequence  QLTKEVTLIEELSCAGPAKALRKLHGKCLSQLQP. . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  GLQQILQLLKESQSPDTTIQRTVQQKLEQLNNNYLIFVLTKLKRSLSGLILKNNVKAHFQ
Template Known Secondary structure 
SGGGTTTSS

TTT


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   11........20.........30.........40.........50.........60.........70
 
   810...... ...820.........830.........840. ........850.........860.
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Query Sequence  . . . . . LPQTLQA. WALLQLDGPPRLCRAARTRLASAAR. . NKRFREKALLYYTNALNDSD
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Template Sequence  NFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDLLPKLCSLLDSED
Template Known Secondary structure  TS
SSTTTTT
SSTTTTTT
STTTTTS
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   82.......90.........100.........110.........120.........130.........140.
 
   862.......870..... ....880.........890.........900......
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Query Sequence  AKVQQAACVALQQL. . . . . . GGIESCEQIVSLCQSDLEAVRVAAREATLSF
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Template Sequence  YNTCEGAFGALQKICEDSAEPLNIMIPKFLQFFKHSSPKIRSHAVACVNQF
Template Known Secondary structure 

GGGGTT
S
GGG
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   142.......150.........160.........170.........180.........190..
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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