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Job DescriptionA1L3T7
Confidence95.79%DateTue Jul 30 12:55:19 BST 2013
Rank63Aligned Residues258
% Identity10%Templatec1m5nS_
PDB info PDB header:protein transportChain: S: PDB Molecule:importin beta-1 subunit; PDBTitle: crystal structure of heat repeats (1-11) of importin b2 bound to the non-classical nls(67-94) of pthrp
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   615....620.........630.........640...... ...650.........660..
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Query Sequence  LTVHLQVCKALLQKLASPNLSRMVEDCLLEEA. . . . . . . . . . . . VQQRQVLEVLSDLDLE
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Template Sequence  SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP
Template Known Secondary structure 
SS
S
GGG
SGGG
S
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   170.........180.........190.........200.........210.........220.........
 
   663......670......... 680.........690.........700.........710.
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Query Sequence  QVSKARSVEEIIPQASH. . . . . . . . . . . RKGGLALWQGCTQPGGVLACPASTLLSQLKKT
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Template Conservation             
  
               
              
   
   
      
Template Sequence  DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDE
Template Known Secondary structure 

TTGGGGTTTTTTT
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   230.........240.........250.........260.........270.........280.........
 
   712.......720..... ....730.........740.........750.........
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Query Sequence  FLHRVRGKYPGQLE. . . . . . . . . . . . IVCRRLLEQVVGCGGLLVPAGLQEEQVVTWFQFH
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Template Sequence  EMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDD. WNPCKAA
Template Known Secondary structure  TTTTTS

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TT


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   290.........300.........310.........320.........330.........340. .......
 
   760.........770.........780.........790.........800.........810..
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Query Sequence  SYLQRQSISDLEKHLAQLTKEVTLIEELSCAGPAKALRKLHGKCLSQLQPLPQ. . . . . . .
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Template Sequence  GVCLMLLATCCEDDIVPHVLP. FIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI
Template Known Secondary structure  T
TT.GGGSS
SSTTTSSS
GGGT
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   349350.........360......... 370.........380.........390.........400.......
 
   813......820.........830.........840. ........850.........860....
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Query Sequence  . TLQAWALLQLDGPPRLCRAARTRLASAAR. . . . . . . NKRFREKALLYYTNALNDSDAKV
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Template Sequence  QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA. EPRV
Template Known Secondary structure  TTTT
SSS
SGGGS
TS.
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   408.410.........420.........430.........440.........450.........460.. ....
 
   865....870.....
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Query Sequence  QQAACVALQQL
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Template Sequence  ASNVCWAFSSL
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   467..470.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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