Return to main results Retrieve Phyre Job Id

Job DescriptionA1L3T7
Confidence92.76%DateTue Jul 30 12:55:19 BST 2013
Rank76Aligned Residues95
% Identity17%Templatec3l9bA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:otoferlin; PDBTitle: crystal structure of rat otoferlin c2a
Resolution1.95 Å
Model Dimensions (Å)X:44.325 Y:37.474 Z:28.602

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   225....230.........240.........250......... 260.........270..... ....280
Predicted Secondary structure 


























...



.

Query SS confidence 


































. . .















.




Query Sequence  VLMRLGRQRWRLKGRIEPDDSQTWDEEERVFVPTV. . . HENLEIKVTELRGLSS. MVVGA
Query Conservation 
    
 



  
 
     
 

 

 

 
  ...     




 
 
  .  

 
Alig confidence 


































...















.




Template Conservation 
 
       

 
       
 


 
 
           
 
 
 
      
  

 
Template Sequence  AKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNKLIGT
Template Known Secondary structure  TT



S
SS


TT

TTS

Template Predicted Secondary structure 






















Template SS confidence 



























































   21........30.........40.........50.........60.........70.........80
 
   281........290.........300.... .....310.........
Predicted Secondary structure 










....




Query SS confidence 























. . . .














Query Sequence  VTCDVADFFMARPQLVVVDITELG. . . . TIKLQLELLWNPLDS
Query Conservation 
 
     
   

   



 

....



 
 
 
 



Alig confidence 























....














Template Conservation    
 
  
           
           
 
      
 
Template Sequence  FRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQAADG
Template Known Secondary structure  SS
TTS
TT
Template Predicted Secondary structure 











Template SS confidence 










































   81........90.........100.........110.........120...
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D