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Job DescriptionA1L3T7
Confidence93.90%DateTue Jul 30 12:55:19 BST 2013
Rank73Aligned Residues149
% Identity18%Templatec1wa5B_
PDB info PDB header:nuclear transportChain: B: PDB Molecule:importin alpha subunit; PDBTitle: crystal structure of the exportin cse1p complexed with its2 cargo (kap60p) and rangtp
Resolution2.0 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   782.......790.........800..... ....810.........820.........830...
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Query Sequence  TLIEELSCAGPAKALRKLHGKCLS. . . . . . . . QLQPLPQTLQAWALLQLDGPPRLCRAAR
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Template Sequence  RLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEAC
Template Known Secondary structure  GGG
S
TTS
TTTT
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   303......310.........320.........330.........340.........350.........360..
 
   834.....840.........850. ........860.........870....
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Query Sequence  TRLASAARNKRFREKALL. . . . . . YYTNALNDSDAKVQQAACVALQQ. . . . . . . . . . . . .
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Template Sequence  WTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIR
Template Known Secondary structure  TTS
TT
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TTT
T
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   363......370.........380.........390.........400.........410.........420..
 
   875....880.........890.........900.........910.. .
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Query Sequence  . LGGIESCEQIVSLCQSDLEAVRVAAREATLSFGEKGRL. . . . . . . . . . . . . . . . . . . . A
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Template Sequence  YLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGG
Template Known Secondary structure  TT
TTT

T
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TT
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   423......430.........440.........450.........460.........470.........480..
 
   914.....920.........930
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Query Sequence  FEKMDKLHSEQEAFCQE
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Template Conservation     
  
       
  
Template Sequence  MEKIFNCQQNENDKIYE
Template Known Secondary structure  GGGG
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   483......490.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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