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Job DescriptionA1L3T7
Confidence96.36%DateTue Jul 30 12:55:19 BST 2013
Rank58Aligned Residues195
% Identity12%Templatec2jdqB_
PDB info PDB header:protein transportChain: B: PDB Molecule:importin alpha-1 subunit; PDBTitle: c-terminal domain of influenza a virus polymerase pb22 subunit in complex with human importin alpha5
Resolution2.2 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   711........720.........730.........740.........750.........760.........770
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Query Sequence  TFLHRVRGKYPGQLEIVCRRLLEQVVGCGGLLVPAGLQEEQVVTWFQFHSYLQRQSISDL
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Template Sequence  ADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQT
Template Known Secondary structure  TSS
TTTGGG
S
TTS
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   272.......280.........290.........300.........310.........320.........330.
 
   771........780.........790.........800.........810.. .......820..
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Query Sequence  EKHLAQLTKEVTLIEELSCAGPAKALRKLHGKCLSQLQPLPQ. . . . . . . . TLQAWALLQL
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Template Conservation            .     
              
  
                   
   
 
Template Sequence  QVILNCSALQ. SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ
Template Known Secondary structure  TTT.TT
SSTTS
TT
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   332.......340. ........350.........360.........370.........380.........390
 
   823......830.........840..... ....850.........860.........870.....
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Query Sequence  DGPPRLCRAARTRLASAARNKRF. . . . . . . REKALLYYTNALNDSDAKVQQAACVALQQL
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Template Conservation           
   
  
           
     
  
  

           
  
  
Template Sequence  TAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENI
Template Known Secondary structure  S


TT
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   391........400.........410.........420.........430.........440.........450
 
   876...880.........890.........900......
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . GGIESCEQIVSLCQSDLEAVRVAAREATLSF
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Template Conservation 
                    
        
  
       
   
  

   
Template Sequence  LRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHY
Template Known Secondary structure  TSS




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   451........460.........470.........480.........490.........500...
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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