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Job DescriptionA1L3T7
Confidence32.67%DateTue Jul 30 12:55:19 BST 2013
Rank146Aligned Residues115
% Identity19%Templated1siga_
SCOP infoSigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors Sigma2 domain of RNA polymerase sigma factors
Resolution2.60

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   66...70.........80.........90. ........100.........110.. ..
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Query Sequence  CLDPRPQQVKKIFDALKRGLREHLCE. . . . . . QQAELDYLCGRHTDTQRGSRL. . . . . AF
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Template Sequence  DLDIDPELAREKFAELRAQYVVTRDTIKAHATAQEEILKLSEVFKQFRLVPKQFDYLVNS
Template Known Secondary structure  TT


TT

TT
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   189190.........200.........210.........220.........230.........240........
 
   115....120.........130......... 140
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Query Sequence  YYDLDKQLRLVERHIRKVEFHISKV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . D
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Template Sequence  MRVMMDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHD
Template Known Secondary structure  TTS


TTT
SSGGGTTT
SGGG
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   273......280.........290.........300.........310.........320.........330..
 
   141........150....... ..160.........170.........180...
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Query Sequence  ELYEAYCIQWRLRDGAS. . . . . . . . . . . . . . NMQRAFSNSTQSRASRESLQELGRSL
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Template Sequence  VSEEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAK. . . ARRAKKEMVEANLRL
Template Known Secondary structure  TTS
...T
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   333......340.........350.........360.........370. ........380......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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