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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1lshA_

Fold library idPDB HeaderMoleculeTitle
c1lshA_PDB header: lipid binding proteinChain: A: PDB Molecule: lipovitellin (lv-1n, lv-1c);PDBTitle: lipid-protein interactions in lipovitellin


Added to library: Tue Mar 16 14:06:24 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence FQPGKVYRYSYDAFSISGLPEPGVNRAGLSGEMKIEIHGHTHNQATLKITQVNLKYFLGPWPSDSFYPLT
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Known secondary structure (DSSP)

BT
SSTTS
SSSSSS



 .........80.........90.........100.........110.........120.........130.........140
Sequence GGYDHFIQQLEVPVRFDYSAGRIGDIYAPPQVTDTAVNIVRGILNLFQLSLKKNQQTFELQETGVEGICQ
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Known secondary structure (DSSP) TT
TS
TT

TTS
T




TT
STT
 .........150.........160.........170.........180.........190.........200.........210
Sequence TTYVVQEGYRTNEMAVVKTKDLNNCDHKVYKTMGTAYAERCPTCQKMNKNLRSTAVYNYAIFDEPSGYII
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Known secondary structure (DSSP)
SSSS

S
TT



STT
 .........220.........230.........240.........250.........260.........270.........280
Sequence KSAHSEEIQQLSVFDIKEGNVVIESRQKLILEGIQSAPAASQAASLQNRGGLMYKFPSSAITKMSSLFVT
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Known secondary structure (DSSP)
SS
GGG



S







B


SS



TTS
SS


 .........290.........300.........310.........320.........330.........340.........350
Sequence KGKNLESEIHTVLKHLVENNQLSVHEDAPAKFLRLTAFLRNVDAGVLQSIWHKLHQQKDYRRWILDAVPA
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Known secondary structure (DSSP) TTS

SSS

TTTTS
TTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence MATSEALLFLKRTLASEQLTSAEATQIVASTLSNQQATRESLSYARELLNTSFIRNRPILRKTAVLGYGS
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Known secondary structure (DSSP)
STT
S
T



T
T
 .........430.........440.........450.........460.........470.........480.........490
Sequence LVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQPNSIKKIQRFLPGQGKSLDEYS
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Known secondary structure (DSSP) TT
SS

GGGTTT
T
GGGTTSTTSSS



S
 .........500.........510.........520.........530.........540.........550.........560
Sequence TRVQAEAIMALRNIAKRDPRKVQEIVLPIFLNVAIKSELRIRSCIVFFESKPSVALVSMVAVRLRREPNL
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Known secondary structure (DSSP) TTTTGGGT

TTS
T


TT
S
 .........570.........580.........590.........600.........610.........620.........630
Sequence QVASFVYSQMRSLSRSSNPEFRDVAAACSVAIKMLGSKLDRLGCRYSKAVHVDTFNARTMAGVSADYFRI
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Known secondary structure (DSSP) TT

SGGGTTS
SGGGG

TTS
TTTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence NSPSGPLPRAVAAKIRGQGMGYASDIVEFGLRAEGLQELLYDWKSVPEERPLASGYVKVHGQEVVFAELD
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Known secondary structure (DSSP) TTTT











STTS
 .........710.........720.........730.........740.........750.........760.........770
Sequence KKMQEQIGAVVSKLEQGMDVLLTKGYVVSEVRYMQPVCIGIPMDLNLLVSGVTTNRANLSASFSSLPADM
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Known secondary structure (DSSP) TT

T

TTSS
SS

TT
 .........780.........790.........800.........810.........820.........830.........840
Sequence KLADLLATNIELRVAATTSMSQHAVAIMGLTTDLAKAGMQTHYKTSAGLGVNGKIEMNARESNFKASLKP
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Known secondary structure (DSSP)
TTS

SS
TTTT

 .........850.........860.........870.........880.........890.........900.........910
Sequence FQQKTVVVLSTMESIVFVRDPSGSRILPVLPPKMTQKQIHDIMTARPVMRRKQSCSKSAALSSKVCFSAR
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Known secondary structure (DSSP)

S
TTSS
SS


S
SS




TTTT
 .........920.........930.........940.........950....
Sequence LRNAAFIRNALLYKITGDYVSKVYVQPTSSKAQITKVELELQAG
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Known secondary structure (DSSP) STTT
S
TS

SS




S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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