PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c3ltjA_

Fold library id	PDB Header	Molecule	Title
c3ltjA_	PDB header: protein binding	Chain: A: PDB Molecule: alpharep-4;	PDBTitle: structure of a new family of artificial alpha helicoidal repeat2 proteins (alpha-rep) based on thermostable heat-like repeats

Links to external resources
Added to library: Tue Oct 19 11:32:42 2010

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence H H H H T D P E K V E M Y I K N L Q D D S Y Y V R R A A A Y A L G K I G D E R A V E P L I K A L K D E D A W V R R A A A D A L G Q I G D E R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
G G G T T
S S
G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A V E P L I K A L K D E D G W V R Q S A A V A L G Q I G D E R A V E P L I K A L K D E D W F V R I A A A F A L G E I G D E R A V E P L I K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G T T
S S
G G G T T
S S T
G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 .

Sequence L K D E D G W V R Q S A A D A L G E I G G E R V R A A M E K L A E T G T G F A R K V A V N Y L E T H K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
S

Download: PDB structure FASTA sequence
Hidden Markov model

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Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	H	H	H	H	T	D	P	E	K	V	E	M	Y	I	K	N	L	Q	D	D	S	Y	Y	V	R	R	A	A	A	Y	A	L	G	K	I	G	D	E	R	A	V	E	P	L	I	K	A	L	K	D	E	D	A	W	V	R	R	A	A	A	D	A	L	G	Q	I	G	D	E	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	T	T		S																		G	G	G								T	T		S	S																	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	V	E	P	L	I	K	A	L	K	D	E	D	G	W	V	R	Q	S	A	A	V	A	L	G	Q	I	G	D	E	R	A	V	E	P	L	I	K	A	L	K	D	E	D	W	F	V	R	I	A	A	A	F	A	L	G	E	I	G	D	E	R	A	V	E	P	L	I	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G								T	T		S	S																	G	G	G								T	T		S	S															T		G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Sequence	L	K	D	E	D	G	W	V	R	Q	S	A	A	D	A	L	G	E	I	G	G	E	R	V	R	A	A	M	E	K	L	A	E	T	G	T	G	F	A	R	K	V	A	V	N	Y	L	E	T	H	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T		S	S																S