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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2ynsA_

Fold library idPDB HeaderMoleculeTitle
c2ynsA_PDB header: transport proteinChain: A: PDB Molecule: importin subunit alpha-1a;PDBTitle: rimp_alpha_b54nls


Added to library: Mon Jan 14 11:35:06 2013
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTN
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Known secondary structure (DSSP)
TSS
S
SS


TT
TT
TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence IASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH
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Known secondary structure (DSSP) TTS
TTGGG
S
TS
TT
T
STT
 .........150.........160.........170.........180.........190.........200.........210
Sequence TKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIE
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Known secondary structure (DSSP)


SSS


TTTT


TSSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence AGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTIS
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Known secondary structure (DSSP) TT
GGG
S
TTS
TTTS


 .........290.........300.........310.........320.........330.........340.........350
Sequence NITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLI
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Known secondary structure (DSSP) TTS
TT
S


TT
GGG
 .........360.........370.........380.........390.........400.........410.........420
Sequence CPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY
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Known secondary structure (DSSP) SS
TT
SS
TTGGG
S
 ..
Sequence WM
Predicted secondary structure

SS confidence

Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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