Fold library entry viewer: d2bpta1

Added to library: Tue Mar 16 13:58:02 2010
Links to external resources

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	S	T	A	E	F	A	Q	L	L	E	N	S	I	L	S	P	D	Q	N	I	R	L	T	S	E	T	Q	L	K	K	L	S	N	D	N	F	L	Q	F	A	G	L	S	S	Q	V	L	I	D	E	N	T	K	L	E	G	R	I	L	A	A	L	T	L	K	N	E	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	S	S																															T		T	T	S														T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	K	D	S	V	K	T	Q	Q	F	A	Q	R	W	I	T	Q	V	S	P	E	A	K	N	Q	I	K	T	N	A	L	T	A	L	V	S	I	E	P	R	I	A	N	A	A	A	Q	L	I	A	A	I	A	D	I	E	L	P	H	G	A	W	P	E	L	M	K	I	M	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S															S																	T		S	S																			G	G	G	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	N	T	G	A	E	Q	P	E	N	V	K	R	A	S	L	L	A	L	G	Y	M	C	E	S	A	D	P	Q	S	Q	A	L	V	S	S	S	N	N	I	L	I	A	I	V	Q	G	A	Q	S	T	E	T	S	K	A	V	R	L	A	A	L	N	A	L	A	D	S	L	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	S	T	T	S																		T	S	S	T	T	S	S	T	T	G	G	G													S	T	T																		G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	F	I	K	N	N	M	E	R	E	G	E	R	N	Y	L	M	Q	V	V	C	E	A	T	Q	A	E	D	I	E	V	Q	A	A	A	F	G	C	L	C	K	I	M	S	K	Y	Y	T	F	M	K	P	Y	M	E	Q	A	L	Y	A	L	T	I	A	T	M	K	S	P	N	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G						T	S																T		S																				G	G	G								T									T	T		S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	K	V	A	S	M	T	V	E	F	W	S	T	I	C	E	E	E	I	D	I	A	Y	E	L	A	Q	F	P	Q	S	P	L	Q	S	Y	N	F	A	L	S	S	I	K	D	V	V	P	N	L	L	N	L	L	T	R	Q	N	E	D	E	D	D	D	W	N	V	S	M	S	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																												T	T		S																						T	T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	G	A	C	L	Q	L	F	A	Q	N	C	G	N	H	I	L	E	P	V	L	E	F	V	E	Q	N	I	T	A	D	N	W	R	N	R	E	A	A	V	M	A	F	G	S	I	M	D	G	P	D	K	V	Q	R	T	Y	Y	V	H	Q	A	L	P	S	I	L	N	L	M	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												G	G	G	G												T	T		S	S														T	S	S	S	S																			G	G	G
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	D	Q	S	L	Q	V	K	E	T	T	A	W	C	I	G	R	I	A	D	S	V	A	E	S	I	D	P	Q	Q	H	L	P	G	V	V	Q	A	C	L	I	G	L	Q	D	H	P	K	V	A	T	N	C	S	W	T	I	I	N	L	V	E	Q	L	A	E	A	T	P	S	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S																				G	G	G	S		T	T	T	T													T	S																				S	S	S	S	S		G
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	I	Y	N	F	Y	P	A	L	V	D	G	L	I	G	A	A	N	R	I	D	N	E	F	N	A	R	A	S	A	F	S	A	L	T	T	M	V	E	Y	A	T	D	T	V	A	E	T	S	A	S	I	S	T	F	V	M	D	K	L	G	Q	T	M	S	V	D	E	N	Q	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G	G													T		S			G	G	G																		G	G	G																			T	T	S		G	G	G
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	T	L	E	D	A	Q	S	L	Q	E	L	Q	S	N	I	L	T	V	L	A	A	V	I	R	K	S	P	S	S	V	E	P	V	A	D	M	L	M	G	L	F	F	R	L	L	E	K	K	D	S	A	F	I	E	D	D	V	F	Y	A	I	S	A	L	A	A	S	L	G	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																											G	G	G	T	G	G	G														S	T	T	G	G	G	T																G	G
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	G	F	E	K	Y	L	E	T	F	S	P	Y	L	L	K	A	L	N	Q	V	D	S	P	V	S	I	T	A	V	G	F	I	A	D	I	S	N	S	L	E	E	D	F	R	R	Y	S	D	A	M	M	N	V	L	A	Q	M	I	S	N	P	N	A	R	R	E	L	K	P	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G																		T	T	S																	T	G	G	G	G																		T	T			T	T
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	V	L	S	V	F	G	D	I	A	S	N	I	G	A	D	F	I	P	Y	L	N	D	I	M	A	L	C	V	A	A	Q	N	T	K	P	E	N	G	T	L	E	A	L	D	Y	Q	I	K	V	L	E	A	V	L	D	A	Y	V	G	I	V	A	G	L	H	D	K	P	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													G	G	G	G																T				S	S	S	S																									T	T	T
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	L	F	P	Y	V	G	T	I	F	Q	F	I	A	Q	V	A	E	D	P	Q	L	Y	S	E	D	A	T	S	R	A	A	V	G	L	I	G	D	I	A	A	M	F	P	D	G	S	I	K	Q	F	Y	G	Q	D	W	V	I	D	Y	I	K	R	T	R	S	G	Q	L	F	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G																			T	S																			T	T	S	T	T	G	G	G	T	T															S	S	S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860
Sequence	Q	A	T	K	D	T	A	R	W	A	R	E	Q	Q	K	R	Q	L	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			T

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PDB structure

FASTA sequence

Hidden Markov model

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