Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionA2A5R2
DateWed Jul 10 14:14:35 BST 2013
Unique Job ID2603581db20acf58
SequenceMQESQTKSMF ... Download FASTA

Summary 

Top model
Image coloured by rainbow N → C terminus
Model dimensions (Å):X:64.851 Y:48.325 Z:45.439
Model (left) based on template d1pbva_
Top template information
Fold:alpha-alpha superhelix
Superfamily:Sec7 domain
Family:Sec7 domain
Confidence and coverage
Confidence:100.0% Coverage: 11%
193 residues ( 11% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
1002 residues ( 56%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MQESQTKSMFVSRALEKILADKEVKRPQHSQLRRACQVALDEIKAELEKQRLGAAAPPKA
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   .........70.........80.........90.........100.........110.........120
Sequence  NFIEADKYFLPFELACQSKSPRVVSTSLDCLQKLIAYGHITGNAPDSGAPGKRLIDRIVE
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   .........130.........140.........150.........160.........170.........180
Sequence  TICNCFQGPQTDEGVQLQIIKALLTAVTSPHIEIHEGTILQTVRTCYNIYLASKNLINQT
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   .........190.........200.........210.........220.........230.........240
Sequence  TAKATLTQMLNVIFTRMENQVLQEARELEKPMQSKPQSPVIQATAGSPKFSRLKQSQAQS
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   .........250.........260.........270.........280.........290.........300
Sequence  KPTTPEKAELPNGDHAQSGLGKVSLENGEAPRERGSPVSGRAEPSRGTDSGAQEVVKDIL
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   .........310.........320.........330.........340.........350.........360
Sequence  EDVVTSAVKEAAEKHGLPEPDRALGALECQECAVPPGVDENSQTNGIADDRQSLSSADNL
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   .........370.........380.........390.........400.........410.........420
Sequence  EPDVQGHQVAARFSHILQKDAFLVFRSLCKLSMKPLGEGPPDPKSHELRSKVVSLQLLLS
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   .........430.........440.........450.........460.........470.........480
Sequence  VLQNAGPVFRSHEMFVTAIKQYLCVALSKNGVSSVPDVFELSLAIFLTLLSNFKMHLKMQ
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   .........490.........500.........510.........520.........530.........540
Sequence  IEVFFKEIFLNILETSTSSFEHRWMVIQTLTRICADAQCVVDIYVNYDCDLNAANIFERL
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   .........550.........560.........570.........580.........590.........600
Sequence  VNDLSKIAQGRSGHELGMTPLQELSLRKKGLECLVSILKCMVEWSKDLYVNPNHQATLGQ
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   .........610.........620.........630.........640.........650.........660
Sequence  ERLPDQEMGDGKGLDMARRCSVTSVESTVSSGTQTAIQDDPEQFEVIKQQKEIIEHGIEL
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   .........670.........680.........690.........700.........710.........720
Sequence  FNKKPKRGIQFLQEQGMLGAAVEDIAQFLHQEERLDSTQVGEFLGDSTRFNKEVMYAYVD
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   .........730.........740.........750.........760.........770.........780
Sequence  QLDFCEKEFVSALRTFLEGFRLPGEAQKIDRLMEKFAARYIECNQGQTLFASADTAYVLA
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   .........790.........800.........810.........820.........830.........840
Sequence  YSIIMLTTDLHSPQVKNKMTKEQYIKMNRGINDSKDLPEEYLSSIYDEIEGKKIAMKETK
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   .........850.........860.........870.........880.........890.........900
Sequence  EHTIATKSTKQSVASEKQRRLLYNVEMEQMAKTAKALMEAVSHAKAPFTSATHLDHVRPM
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   .........910.........920.........930.........940.........950.........960
Sequence  FKLVWTPLLAAYSIGLQNCDDTEVASLCLEGIRCAVRIACIFGMQLERDAYVQALARFSL
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   .........970.........980.........990.........1000.........1010.........1020
Sequence  LTASSSITEMKQKNIDTIKTLITVAHTDGNYLGNSWHEILKCISQLELAQLIGTGVKTRY
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   .........1030.........1040.........1050.........1060.........1070.........1080
Sequence  LSGSGREREGSLKGHSLAGEEFMGLGLGNLVSGGVDKRQMASFQESVGETSSQSVVVAVD
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   .........1090.........1100.........1110.........1120.........1130.........1140
Sequence  RIFTGSTRLDGNAIVDFVRWLCAVSMDELASPHHPRMFSLQKIVEISYYNMNRIRLQWSR
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   .........1150.........1160.........1170.........1180.........1190.........1200
Sequence  IWHVIGDHFNKVGCNPNEDVAIFAVDSLRQLSMKFLEKGELANFRFQKDFLRPFEHIMKK
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   .........1210.........1220.........1230.........1240.........1250.........1260
Sequence  NRSPTIRDMVIRCIAQMVSSQAANIRSGWKNIFAVFHQAASDHDGNIVELAFQTTGHIVS
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   .........1270.........1280.........1290.........1300.........1310.........1320
Sequence  TIFQHHFPAAIDSFQDAVKCLSEFACNAAFPDTSMEAIRLIRFCGKYVSERPRVLQEYTS
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   .........1330.........1340.........1350.........1360.........1370.........1380
Sequence  DDMNVAPGDRVWVRGWFPILFELSCIINRCKLDVRTRGLTVMFEIMKSYGHTFAKHWWQD
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   .........1390.........1400.........1410.........1420.........1430.........1440
Sequence  LFRIVFRIFDNMKLPEQQSEKSEWMTTTCNHALYAICDVFTQFYEALHEVLLSDVFAQLQ
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   .........1450.........1460.........1470.........1480.........1490.........1500
Sequence  WCVKQDNEQLARSGTNCLENLVISNGEKFSPAVWDETCNCMLDIFKTTIPHVLLTWRPAG
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   .........1510.........1520.........1530.........1540.........1550.........1560
Sequence  MEEEVSDRHLDVDLDRQSLSSIDRNASERGQSQLSNPTDDSWKGAPYAHQKLLASLLIKC
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   .........1570.........1580.........1590.........1600.........1610.........1620
Sequence  VVQLELIQTIDNIVFYPATSKKEDAEHMVAAQQDTLDAEIHIETENQGMYKFMSSQHLFK
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   .........1630.........1640.........1650.........1660.........1670.........1680
Sequence  LLDCLQESHSFSKAFNSNYEQRTVLWRAGFKGKSKPNLLKQETSSLACCLRILFRMYVDE
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   .........1690.........1700.........1710.........1720.........1730.........1740
Sequence  NRRDSWDEIQQRLLRVCSEALAYFITVNSESHREAWTSLLLLLLTKTLKISDEKFKAHAS
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   .........1750.........1760.........1770.........1780.........1790..
Sequence  MYYPYLCEIMQFDLIPELRAVLRKFFLRIGLVYKIWIPEEPSQVPAALSSTW
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Confidence Key
High(9)                    Low (0)
?Disordered ( 33%)
Alpha helix ( 62%)
Beta strand ( 0%)

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1pbv chain A

3D model

Region: 643 - 837
Aligned: 193
Modelled: 195
Confidence: 100.0%
Identity: 46%
Fold: alpha-alpha superhelix
Superfamily: Sec7 domain
Family: Sec7 domain

Phyre2

PDB 2r09 chain A

3D model

Region: 648 - 850
Aligned: 201
Modelled: 203
Confidence: 100.0%
Identity: 45%
PDB header:signaling protein
Chain: A: PDB Molecule:cytohesin-3;
PDBTitle: crystal structure of autoinhibited form of grp1 arf gtpase exchange2 factor

Phyre2

PDB 1ku1 chain A

3D model

Region: 648 - 837
Aligned: 188
Modelled: 190
Confidence: 100.0%
Identity: 37%
Fold: alpha-alpha superhelix
Superfamily: Sec7 domain
Family: Sec7 domain

Phyre2

PDB 1bc9 chain A

3D model

Region: 646 - 843
Aligned: 196
Modelled: 198
Confidence: 100.0%
Identity: 49%
Fold: alpha-alpha superhelix
Superfamily: Sec7 domain
Family: Sec7 domain

Phyre2

PDB 2r09 chain A domain 1

3D model

Region: 649 - 838
Aligned: 188
Modelled: 190
Confidence: 100.0%
Identity: 48%
Fold: alpha-alpha superhelix
Superfamily: Sec7 domain
Family: Sec7 domain

Phyre2

PDB 1re0 chain B

3D model

Region: 645 - 840
Aligned: 191
Modelled: 196
Confidence: 100.0%
Identity: 38%
Fold: alpha-alpha superhelix
Superfamily: Sec7 domain
Family: Sec7 domain

Phyre2

PDB 1r8s chain E

3D model

Region: 652 - 839
Aligned: 186
Modelled: 188
Confidence: 100.0%
Identity: 49%
Fold: alpha-alpha superhelix
Superfamily: Sec7 domain
Family: Sec7 domain

Phyre2

PDB 1xsz chain A domain 1

3D model

Region: 648 - 837
Aligned: 188
Modelled: 190
Confidence: 100.0%
Identity: 40%
Fold: alpha-alpha superhelix
Superfamily: Sec7 domain
Family: Sec7 domain

Phyre2

PDB 1xsz chain A

3D model

Region: 649 - 843
Aligned: 193
Modelled: 195
Confidence: 100.0%
Identity: 38%
PDB header:signaling protein
Chain: A: PDB Molecule:guanine nucleotide exchange protein;
PDBTitle: the structure of ralf

Phyre2

PDB 3l8n chain A

3D model

Region: 648 - 835
Aligned: 178
Modelled: 188
Confidence: 100.0%
Identity: 92%
PDB header:nucleotide-binding protein, metal-bindin
Chain: A: PDB Molecule:brefeldin a-inhibited guanine nucleotide-exchange
PDBTitle: crystal structure of a domain of brefeldin a-inhibited2 guanine nucleotide-exchange protein 2 (brefeldina-inhibited3 gep 2) from homo sapiens (human). northeast structural4 genomics consortium target id hr5562a

Phyre2

PDB 1u6g chain C

3D model

Region: 1147 - 1481
Aligned: 285
Modelled: 315
Confidence: 98.1%
Identity: 13%
Fold: alpha-alpha superhelix
Superfamily: ARM repeat
Family: HEAT repeat

Phyre2

PDB 1m5n chain S

3D model

Region: 1142 - 1468
Aligned: 311
Modelled: 327
Confidence: 97.4%
Identity: 13%
PDB header:protein transport
Chain: S: PDB Molecule:importin beta-1 subunit;
PDBTitle: crystal structure of heat repeats (1-11) of importin b2 bound to the non-classical nls(67-94) of pthrp

Phyre2

PDB 4a0c chain B

3D model

Region: 1090 - 1470
Aligned: 355
Modelled: 381
Confidence: 97.1%
Identity: 12%
PDB header:cell cycle
Chain: B: PDB Molecule:cullin-associated nedd8-dissociated protein 1;
PDBTitle: structure of the cand1-cul4b-rbx1 complex

Phyre2

PDB 2bpt chain A domain 1

3D model

Region: 1087 - 1774
Aligned: 609
Modelled: 635
Confidence: 96.9%
Identity: 11%
Fold: alpha-alpha superhelix
Superfamily: ARM repeat
Family: Armadillo repeat

Phyre2

PDB 2qk1 chain A

3D model

Region: 1149 - 1370
Aligned: 201
Modelled: 206
Confidence: 96.8%
Identity: 13%
PDB header:protein binding
Chain: A: PDB Molecule:protein stu2;
PDBTitle: structural basis of microtubule plus end tracking by2 xmap215, clip-170 and eb1

Phyre2

PDB 4k92 chain B

3D model

Region: 1155 - 1370
Aligned: 184
Modelled: 197
Confidence: 96.5%
Identity: 7%
PDB header:structural protein
Chain: B: PDB Molecule:clip-associating protein 1;
PDBTitle: a cryptic tog domain with a distinct architecture underlies clasp-2 dependent bipolar spindle formation

Phyre2

PDB 4ffb chain C

3D model

Region: 1193 - 1439
Aligned: 203
Modelled: 222
Confidence: 96.4%
Identity: 11%
PDB header:hydrolase
Chain: C: PDB Molecule:protein stu2;
PDBTitle: a tog:alpha/beta-tubulin complex structure reveals conformation-based2 mechanisms for a microtubule polymerase

Phyre2

PDB 2qk2 chain A

3D model

Region: 1149 - 1370
Aligned: 189
Modelled: 202
Confidence: 96.2%
Identity: 12%
PDB header:protein binding
Chain: A: PDB Molecule:lp04448p;
PDBTitle: structural basis of microtubule plus end tracking by xmap215, clip-1702 and eb1

Phyre2

PDB 3b2a chain A

3D model

Region: 1147 - 1367
Aligned: 183
Modelled: 199
Confidence: 96.1%
Identity: 9%
PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the archaeal heat-like repeats protein ton_19372 from thermococcus onnurineus na1

Phyre2

PDB 4g3a chain A

3D model

Region: 1149 - 1393
Aligned: 208
Modelled: 224
Confidence: 95.9%
Identity: 13%
PDB header:cell cycle
Chain: A: PDB Molecule:clip-associating protein;
PDBTitle: crystal structure of mast/orbit n-terminal domain

Phyre2

PDB 3w3z chain A

3D model

Region: 905 - 1772
Aligned: 716
Modelled: 696
Confidence: 93.7%
Identity: 11%
PDB header:protein transport/nuclear protein
Chain: A: PDB Molecule:importin subunit beta-3;
PDBTitle: crystal structure of kap121p bound to rangtp

Phyre2

PDB 2qna chain A

3D model

Region: 443 - 1471
Aligned: 706
Modelled: 706
Confidence: 57.7%
Identity: 12%
PDB header:transport protein
Chain: A: PDB Molecule:importin subunit beta-1;
PDBTitle: crystal structure of human importin-beta (127-876) in complex with the2 ibb-domain of snurportin1 (1-65)

Phyre2
1

d1pbva_
2

c2r09A_
3

d1ku1a_
4

d1bc9a_
5

d2r09a1
6

d1re0b_
7

d1r8se_
8

d1xsza1
9

c1xszA_
10

c3l8nA_
11

d1u6gc_
12

c1m5nS_
13

c4a0cB_
14

d2bpta1
15

c2qk1A_
16

c4k92B_
17

c4ffbC_
18

c2qk2A_
19

c3b2aA_
20

c4g3aA_
21



22



23

c3w3zA_
24



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26



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28



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38



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42



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44



45



46



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49



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55

c2qnaA_
56



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101






Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1d1pbva_



100.0 46 Fold:alpha-alpha superhelix
Superfamily:Sec7 domain
Family:Sec7 domain
2c2r09A_



100.0 45 PDB header:signaling protein
Chain: A: PDB Molecule:cytohesin-3;
PDBTitle: crystal structure of autoinhibited form of grp1 arf gtpase exchange2 factor
3d1ku1a_



100.0 37 Fold:alpha-alpha superhelix
Superfamily:Sec7 domain
Family:Sec7 domain
4d1bc9a_



100.0 49 Fold:alpha-alpha superhelix
Superfamily:Sec7 domain
Family:Sec7 domain
5d2r09a1



100.0 48 Fold:alpha-alpha superhelix
Superfamily:Sec7 domain
Family:Sec7 domain
6d1re0b_



100.0 38 Fold:alpha-alpha superhelix
Superfamily:Sec7 domain
Family:Sec7 domain
7d1r8se_



100.0 49 Fold:alpha-alpha superhelix
Superfamily:Sec7 domain
Family:Sec7 domain
8d1xsza1



100.0 40 Fold:alpha-alpha superhelix
Superfamily:Sec7 domain
Family:Sec7 domain
9c1xszA_



100.0 38 PDB header:signaling protein
Chain: A: PDB Molecule:guanine nucleotide exchange protein;
PDBTitle: the structure of ralf
10c3l8nA_



100.0 92 PDB header:nucleotide-binding protein, metal-bindin
Chain: A: PDB Molecule:brefeldin a-inhibited guanine nucleotide-exchange
PDBTitle: crystal structure of a domain of brefeldin a-inhibited2 guanine nucleotide-exchange protein 2 (brefeldina-inhibited3 gep 2) from homo sapiens (human). northeast structural4 genomics consortium target id hr5562a
11d1u6gc_



98.1 13 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:HEAT repeat
12c1m5nS_



97.4 13 PDB header:protein transport
Chain: S: PDB Molecule:importin beta-1 subunit;
PDBTitle: crystal structure of heat repeats (1-11) of importin b2 bound to the non-classical nls(67-94) of pthrp
13c4a0cB_



97.1 12 PDB header:cell cycle
Chain: B: PDB Molecule:cullin-associated nedd8-dissociated protein 1;
PDBTitle: structure of the cand1-cul4b-rbx1 complex
14d2bpta1



96.9 11 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Armadillo repeat
15c2qk1A_



96.8 13 PDB header:protein binding
Chain: A: PDB Molecule:protein stu2;
PDBTitle: structural basis of microtubule plus end tracking by2 xmap215, clip-170 and eb1
16c4k92B_



96.5 7 PDB header:structural protein
Chain: B: PDB Molecule:clip-associating protein 1;
PDBTitle: a cryptic tog domain with a distinct architecture underlies clasp-2 dependent bipolar spindle formation
17c4ffbC_



96.4 11 PDB header:hydrolase
Chain: C: PDB Molecule:protein stu2;
PDBTitle: a tog:alpha/beta-tubulin complex structure reveals conformation-based2 mechanisms for a microtubule polymerase
18c2qk2A_



96.2 12 PDB header:protein binding
Chain: A: PDB Molecule:lp04448p;
PDBTitle: structural basis of microtubule plus end tracking by xmap215, clip-1702 and eb1
19c3b2aA_



96.1 9 PDB header:unknown function
Chain: A: PDB Molecule:putative uncharacterized protein;
PDBTitle: crystal structure of the archaeal heat-like repeats protein ton_19372 from thermococcus onnurineus na1
20c4g3aA_



95.9 13 PDB header:cell cycle
Chain: A: PDB Molecule:clip-associating protein;
PDBTitle: crystal structure of mast/orbit n-terminal domain
21d1qbkb_



not modelled 95.6 8 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Armadillo repeat
22c2db0B_



not modelled 94.6 9 PDB header:protein binding
Chain: B: PDB Molecule:253aa long hypothetical protein;
PDBTitle: crystal structure of ph0542
23c3w3zA_



93.7 11 PDB header:protein transport/nuclear protein
Chain: A: PDB Molecule:importin subunit beta-3;
PDBTitle: crystal structure of kap121p bound to rangtp
24d1ibrb_



not modelled 93.1 10 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Armadillo repeat
25c1w63A_



not modelled 92.8 8 PDB header:endocytosis
Chain: A: PDB Molecule:adapter-related protein complex 1 gamma 1
PDBTitle: ap1 clathrin adaptor core
26d1wa5c_



not modelled 92.4 9 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Armadillo repeat
27c3c5wA_



not modelled 92.4 11 PDB header:hydrolase
Chain: A: PDB Molecule:pp2a a subunit;
PDBTitle: complex between pp2a-specific methylesterase pme-1 and pp2a core2 enzyme
28c2ot8B_



not modelled 90.1 10 PDB header:transport protein
Chain: B: PDB Molecule:transportin-1;
PDBTitle: karyopherin beta2/transportin-hnrnpm nls complex
29d1ee4a_



not modelled 89.7 10 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Armadillo repeat
30c2jdqB_



not modelled 89.3 13 PDB header:protein transport
Chain: B: PDB Molecule:importin alpha-1 subunit;
PDBTitle: c-terminal domain of influenza a virus polymerase pb22 subunit in complex with human importin alpha5
31d1w9ca_



not modelled 88.4 13 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Exportin HEAT-like repeat
32c3nowA_



not modelled 88.3 11 PDB header:protein binding
Chain: A: PDB Molecule:unc-45 protein, sd10334p;
PDBTitle: unc-45 from drosophila melanogaster
33d1xm9a1



not modelled 87.5 11 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Plakophilin 1 helical region
34d1gw5b_



not modelled 85.4 14 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Clathrin adaptor core protein
35c2ynsA_



not modelled 83.9 9 PDB header:transport protein
Chain: A: PDB Molecule:importin subunit alpha-1a;
PDBTitle: rimp_alpha_b54nls
36c2c1tA_



not modelled 76.8 12 PDB header:protein transport/membrane protein
Chain: A: PDB Molecule:importin alpha subunit;
PDBTitle: structure of the kap60p:nup2 complex
37c2z6hA_



not modelled 76.7 10 PDB header:cell adhesion
Chain: A: PDB Molecule:catenin beta-1;
PDBTitle: crystal structure of beta-catenin armadillo repeat region2 and its c-terminal domain
38c4hxtA_



not modelled 73.5 9 PDB header:de novo protein
Chain: A: PDB Molecule:de novo protein or329;
PDBTitle: crystal structure of engineered protein. northeast structural genomics2 consortium target or329
39c3nmwA_



not modelled 72.3 10 PDB header:cell adhesion/cell cycle
Chain: A: PDB Molecule:apc variant protein;
PDBTitle: crytal structure of armadillo repeats domain of apc
40c4db9A_



not modelled 69.8 13 PDB header:de novo protein
Chain: A: PDB Molecule:armadillo repeat protein, yiiim3aiii;
PDBTitle: designed armadillo repeat protein (yiiim3aiii)
41c3slaB_



not modelled 67.6 8 PDB header:signaling protein
Chain: B: PDB Molecule:catenin beta-1;
PDBTitle: x-ray structure of first four repeats of human beta-catenin
42c3opbA_



not modelled 67.1 16 PDB header:protein binding
Chain: A: PDB Molecule:swi5-dependent ho expression protein 4;
PDBTitle: crystal structure of she4p
43c3sl9B_



not modelled 66.6 8 PDB header:signaling protein, protein binding
Chain: B: PDB Molecule:catenin beta-1;
PDBTitle: x-ray structure of beta catenin in complex with bcl9
44c3sl9E_



not modelled 66.6 8 PDB header:signaling protein, protein binding
Chain: E: PDB Molecule:catenin beta-1;
PDBTitle: x-ray structure of beta catenin in complex with bcl9
45d1jdha_



not modelled 66.2 8 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Armadillo repeat
46c4i2wA_



not modelled 66.1 10 PDB header:chaperone/protein binding
Chain: A: PDB Molecule:protein unc-45;
PDBTitle: crystal structure of the myosin chaperone unc-45 from c.elegans in2 complex with a hsp70 peptide
47c1vsy5_



not modelled 65.5 12 PDB header:hydrolase
Chain: 5: PDB Molecule:proteasome activator blm10;
PDBTitle: proteasome activator complex
48c2of3A_



not modelled 65.4 9 PDB header:structural protein, cell cycle
Chain: A: PDB Molecule:zyg-9;
PDBTitle: tog domain structure from c.elegans zyg9
49c2x19B_



not modelled 65.2 11 PDB header:nuclear transport
Chain: B: PDB Molecule:importin-13;
PDBTitle: crystal structure of importin13 - rangtp complex
50c1dvpA_



not modelled 62.8 14 PDB header:transferase
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine
PDBTitle: crystal structure of the vhs and fyve tandem domains of hrs,2 a protein involved in membrane trafficking and signal3 transduction
51c3gq2B_



not modelled 62.5 14 PDB header:transport protein
Chain: B: PDB Molecule:general vesicular transport factor p115;
PDBTitle: crystal structure of the dimer of the p115 tether globular head domain
52c3l6yE_



not modelled 61.8 10 PDB header:cell adhesion
Chain: E: PDB Molecule:catenin delta-1;
PDBTitle: crystal structure of p120 catenin in complex with e-cadherin
53d1q1sc_



not modelled 61.4 14 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Armadillo repeat
54c3slaA_



not modelled 57.9 8 PDB header:signaling protein
Chain: A: PDB Molecule:catenin beta-1;
PDBTitle: x-ray structure of first four repeats of human beta-catenin
55c2qnaA_



57.7 12 PDB header:transport protein
Chain: A: PDB Molecule:importin subunit beta-1;
PDBTitle: crystal structure of human importin-beta (127-876) in complex with the2 ibb-domain of snurportin1 (1-65)
56c3s4wB_



not modelled 57.4 15 PDB header:dna binding protein
Chain: B: PDB Molecule:fanconi anemia group d2 protein homolog;
PDBTitle: structure of the fanci-fancd2 complex
57c2l1lB_



not modelled 53.3 14 PDB header:nuclear protein
Chain: B: PDB Molecule:exportin-1;
PDBTitle: nmr solution structure of the phi0 pki nes peptide in complex with2 crm1-rangtp
58c3zyqA_



not modelled 51.3 21 PDB header:signaling
Chain: A: PDB Molecule:hepatocyte growth factor-regulated tyrosine kinase
PDBTitle: crystal structure of the tandem vhs and fyve domains of hepatocyte2 growth factor-regulated tyrosine kinase substrate (hgs-hrs) at 1.483 a resolution
59c2m9xA_



not modelled 49.9 19 PDB header:transferase
Chain: A: PDB Molecule:microtubule-associated serine/threonine-protein kinase 1;
PDBTitle: solution nmr structure of microtubule-associated serine/threonine-2 protein kinase 1 from homo sapiens, northeast structural genomics3 consortium (nesg) target hr9151a
60c3sl9A_



not modelled 49.3 8 PDB header:signaling protein, protein binding
Chain: A: PDB Molecule:catenin beta-1;
PDBTitle: x-ray structure of beta catenin in complex with bcl9
61c3slaD_



not modelled 49.3 8 PDB header:signaling protein
Chain: D: PDB Molecule:catenin beta-1;
PDBTitle: x-ray structure of first four repeats of human beta-catenin
62c3sl9G_



not modelled 48.0 8 PDB header:signaling protein, protein binding
Chain: G: PDB Molecule:catenin beta-1;
PDBTitle: x-ray structure of beta catenin in complex with bcl9
63c4fgvA_



not modelled 47.3 13 PDB header:transport protein
Chain: A: PDB Molecule:chromosome region maintenance 1 (crm1) or exportin 1
PDBTitle: crystal structure of free crm1 (crystal form 1)
64c3trkA_



not modelled 46.3 14 PDB header:hydrolase
Chain: A: PDB Molecule:nonstructural polyprotein;
PDBTitle: structure of the chikungunya virus nsp2 protease
65c1x5bA_



not modelled 44.4 16 PDB header:protein binding
Chain: A: PDB Molecule:signal transducing adaptor molecule 2;
PDBTitle: the solution structure of the vhs domain of human signal2 transducing adaptor molecule 2
66c2w3cA_



not modelled 42.1 11 PDB header:transport protein
Chain: A: PDB Molecule:general vesicular transport factor p115;
PDBTitle: globular head region of the human general vesicular2 transport factor p115
67c3slaC_



not modelled 40.8 13 PDB header:signaling protein
Chain: C: PDB Molecule:catenin beta-1;
PDBTitle: x-ray structure of first four repeats of human beta-catenin
68c1wa5B_



not modelled 39.2 10 PDB header:nuclear transport
Chain: B: PDB Molecule:importin alpha subunit;
PDBTitle: crystal structure of the exportin cse1p complexed with its2 cargo (kap60p) and rangtp
69d1wa5b_



not modelled 39.2 10 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Armadillo repeat
70d2jdia1



not modelled 38.4 16 Fold:Left-handed superhelix
Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
71d1v9va1



not modelled 38.0 20 Fold:Bromodomain-like
Superfamily:MAST3 pre-PK domain-like
Family:MAST3 pre-PK domain-like
72c2nppE_



not modelled 36.9 12 PDB header:hydrolase/hydrolase inhibitor
Chain: E: PDB Molecule:serine/threonine-protein phosphatase 2a 56 kda regulatory
PDBTitle: structure of the protein phosphatase 2a holoenzyme
73d2nppb1



not modelled 36.9 12 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:B56-like
74c3u0rA_



not modelled 36.9 18 PDB header:apoptosis inhibitor
Chain: A: PDB Molecule:apoptosis inhibitor 5;
PDBTitle: helical repeat structure of apoptosis inhibitor 5 reveals protein-2 protein interaction modules
75d1s1ma2



not modelled 35.6 26 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
76d2vo1a1



not modelled 34.1 29 Fold:P-loop containing nucleoside triphosphate hydrolases
Superfamily:P-loop containing nucleoside triphosphate hydrolases
Family:Nitrogenase iron protein-like
77c2z6gA_



not modelled 33.7 10 PDB header:cell adhesion
Chain: A: PDB Molecule:b-catenin;
PDBTitle: crystal structure of a full-length zebrafish beta-catenin
78c3tjzB_



not modelled 32.7 13 PDB header:protein transport/protein binding
Chain: B: PDB Molecule:coatomer subunit gamma;
PDBTitle: crystal structure of arf1 bound to the gamma/zeta-cop core complex
79d1rz4a2



not modelled 31.9 25 Fold:alpha-alpha superhelix
Superfamily:ARM repeat
Family:Eukaryotic translation initiation factor 3 subunit 12, eIF3k, N-terminal domain
80c2jkrL_



not modelled 30.4 11 PDB header:endocytosis
Chain: L: PDB Molecule:ap-2 complex subunit alpha-2;
PDBTitle: ap2 clathrin adaptor core with dileucine peptide rm(2 phosphos)qikrllse
81c2h7vD_



not modelled 30.0 22 PDB header:signaling protein
Chain: D: PDB Molecule:protein kinase ypka;
PDBTitle: co-crystal structure of ypka-rac1
82c4db8B_



not modelled 28.9 16 PDB header:de novo protein
Chain: B: PDB Molecule:armadillo-repeat protein;
PDBTitle: designed armadillo-repeat protein
83c1o1nA_



not modelled 28.4 12 PDB header:oxygen storage/transport
Chain: A: PDB Molecule:hemoglobin alpha chain;
PDBTitle: deoxy hemoglobin (a-glyglygly-c:v1m,l29w; b,d:v1m)
84d1l8qa1



not modelled 27.9 15 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:TrpR-like
Family:Chromosomal replication initiation factor DnaA C-terminal domain IV
85c1rz4A_



not modelled 26.6 25 PDB header:biosynthetic protein
Chain: A: PDB Molecule:eukaryotic translation initiation factor 3 subunit 11;
PDBTitle: crystal structure of human eif3k
86c3nvaB_



not modelled 25.1 24 PDB header:ligase
Chain: B: PDB Molecule:ctp synthase;
PDBTitle: dimeric form of ctp synthase from sulfolobus solfataricus
87c1pjmB_



not modelled 24.6 11 PDB header:protein transport
Chain: B: PDB Molecule:importin alpha-2 subunit;
PDBTitle: mouse importin alpha-bipartite nls from human2 retinoblastoma protein complex
88c2ad5B_



not modelled 24.5 26 PDB header:ligase
Chain: B: PDB Molecule:ctp synthase;
PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution.
89d1o5ha_



not modelled 24.4 14 Fold:Methenyltetrahydrofolate cyclohydrolase-like
Superfamily:Methenyltetrahydrofolate cyclohydrolase-like
Family:Methenyltetrahydrofolate cyclohydrolase-like
90d1dvpa1



not modelled 24.3 13 Fold:alpha-alpha superhelix
Superfamily:ENTH/VHS domain
Family:VHS domain
91c2eqxA_



not modelled 23.3 14 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:kelch repeat and btb domain-containing protein 4;
PDBTitle: solution structure of the back domain of kelch repeat and2 btb domain-containing protein 4
92c2fbqA_



not modelled 23.2 17 PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: the crystal structure of transcriptional regulator pa3006
93c3npiB_



not modelled 22.9 21 PDB header:gene regulation
Chain: B: PDB Molecule:tetr family regulatory protein;
PDBTitle: crystal structure of a tetr family regulatory protein (dip1788) from2 corynebacterium diphtheriae at 2.96 a resolution
94c1vcnA_



not modelled 22.9 19 PDB header:ligase
Chain: A: PDB Molecule:ctp synthetase;
PDBTitle: crystal structure of t.th. hb8 ctp synthetase complex with sulfate2 anion
95c3oqsA_



not modelled 22.8 11 PDB header:protein transport
Chain: A: PDB Molecule:importin subunit alpha-2;
PDBTitle: crystal structure of importin-alpha bound to a clic4 nls peptide
96c2po4A_



not modelled 22.3 18 PDB header:transferase
Chain: A: PDB Molecule:virion rna polymerase;
PDBTitle: x-ray crystal structure of polymerase domain of the2 bacteriophage n4 virion rna polymerase
97d1j1va_



not modelled 22.1 20 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:TrpR-like
Family:Chromosomal replication initiation factor DnaA C-terminal domain IV
98c3ifqB_



not modelled 21.4 11 PDB header:cell adhesion
Chain: B: PDB Molecule:plakoglobin;
PDBTitle: interction of plakoglobin and beta-catenin with desmosomal2 cadherins
99c3v6aA_



not modelled 20.9 12 PDB header:apoptosis inhibitor
Chain: A: PDB Molecule:apoptosis inhibitor 5;
PDBTitle: helical repeat structure of apoptosis inhibitor 5 reveals protein-2 protein interaction modules
100c3a6pA_



not modelled 20.4 10 PDB header:protein transport/nuclear protein/rna
Chain: A: PDB Molecule:exportin-5;
PDBTitle: crystal structure of exportin-5:rangtp:pre-mirna complex
101c2lmdA_



not modelled 20.3 21 PDB header:transcription
Chain: A: PDB Molecule:prospero homeobox protein 1;
PDBTitle: minimal constraints solution nmr structure of prospero homeobox2 protein 1 from homo sapiens, northeast structural genomics consortium3 target hr4660b

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