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Job DescriptionA2A5R2
Confidence62.50%DateWed Jul 10 14:14:35 BST 2013
Rank51Aligned Residues196
% Identity14%Templatec3gq2B_
PDB info PDB header:transport proteinChain: B: PDB Molecule:general vesicular transport factor p115; PDBTitle: crystal structure of the dimer of the p115 tether globular head domain
Resolution2.18 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   11891190.........1200.........1210.........1220........ .1230.........1240.......
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Query Sequence  DFLRPFEHIMKKNRSPTIRDMVIRCIAQMVSSQAANIRSG. WKNIFAVFHQAASDHDGNI
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Template Sequence  ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQ. . TDRSDSEI
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   21........30.........40.........50.........60.........70 ........
 
   1248.1250.........1260.........1270.... .....1280.........1290.........1300....
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Query Sequence  VELAFQTTGHIVSTIFQHHFPAAIDSF. . . QDAVKCLSEFACNAAFPDTSMEAIRLIRFC
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Template Sequence  IGYALDTLYNIISNDEEDLGSQFTEIFIKQQENVTLLLSLLE. EFDFHVRWPGVKLLTSL
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   7980.........90.........100.........110.........120 .........130.......
 
   1305 ....1310.........1320.........1330.........1340.........1350......
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Query Sequence  G. . . . . . . . KYVSERPRVLQEYTSDDMNVAPGDRVWVRGWFPILFELSCIINRCKLDVRT
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Template Sequence  LKQLGPQVQQIILVSPM. . . . . . . . . . . . . . . . . . . . . . . . . GVSRLMDLLADSREVIRN
Template Known Secondary structure  SSTT.........................GGGT
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   150.........160...... ...170.........180....
 
   1357..1360.........1370......... 1380.........1390.........1400.........1410.....
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Query Sequence  RGLTVMFEIMKSYGHTFAKHWWQ. DLFRIVFRIFDNMKLPEQQSEKSEWMTTTCNHALYA
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Template Sequence  DGVLLLQALTRS. . . . . NGAIQKIVAFENAFERLLDIITEEGNSDGG. IVVEDCLILLQN
Template Known Secondary structure  TT.....
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   185....190...... ...200.........210.........220...... ...230........
 
   1416..
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Query Sequence  ICD
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Template Sequence  LLK
Template Known Secondary structure  T
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   239240.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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