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Job DescriptionA2A5R2
Confidence57.37%DateWed Jul 10 14:14:35 BST 2013
Rank56Aligned Residues266
% Identity15%Templatec3s4wB_
PDB info PDB header:dna binding proteinChain: B: PDB Molecule:fanconi anemia group d2 protein homolog; PDBTitle: structure of the fanci-fancd2 complex
Resolution3.41 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   11691170.........1180.........1190.........1200.........1210.........1220........
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Query Sequence  RQLSMKFLEKGELANFRFQKDFLRPFEHIMKKNRSPTIRDMVIRCIAQMVSSQAANIRSG
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Template Sequence  KDLTAQMMQLISVAPVNLQHDFITSLPEILGDS. . . . QHANVGKELGELLVQNTSLT. . .
Template Known Secondary structure  S
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GG....G
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   188.190.........200.........210.........220 .........230.........240
 
   12291230.........1240.........1250.........1260.........1270.........1280........
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Query Sequence  WKNIFAVFHQAASDHDGNIVELAFQTTGHIVSTIFQHHFPAAIDSFQDAVKCLSEFACNA
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Template Sequence  . VPILDVFSSLRLDPN. . . . . . . . . FLSKIRQLVMGKLSSVRLEDFPVIVKFLLHSV. . .
Template Known Secondary structure  .S


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   241........250..... ....260.........270.........280.......
 
   12891290.........1300.........1310.........1320.........1330.........1340....
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Query Sequence  AFPDTSMEAIRLIRFCGKYVSERPRVLQEYTSDDMNVAPGDRVWVRGWFPILFELS. . . .
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Template Sequence  . TDTTSLEVIAELRENLNVQNSDKDCIVLVFDVIKSAIRYEKTISEAWFKAIERIESAAE
Template Known Secondary structure  .SSTT



GGGSTT
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   288.290.........300.........310.........320.........330.........340......
 
   1345....1350.........1360.........1370.........1380.........1390......
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Query Sequence  . . . . . . . . CIINRCKLDVRTRGLTVMFEIMKSYGHTFAKHWWQDLFRIVFRIFDNMKLPE
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Template Sequence  HKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSD. CIQEQLLDSAFSTHYLVL. . . . . . .
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   375....380.........390.........400........ .410.........420......
 
   1397..1400.........1410.........1420... ......1430.........1440........
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Query Sequence  QQSEKSEWMTTTCNHALYAICDVFTQF. . . . . . . . YEALHEVLLSDVFAQLQWCVKQDNE
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Template Sequence  . . KDICPSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQEVVGALVTHVCSGTE
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   427..430.........440.........450.........460.........470.........480....
 
   14491450.........1460.....
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Query Sequence  QLARSGTNCLENLVISN
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Template Sequence  AEVDTALDVLLELIVLN
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   485....490.........500.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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