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Job DescriptionA2A5R2
Confidence21.39%DateWed Jul 10 14:14:35 BST 2013
Rank98Aligned Residues303
% Identity11%Templatec3ifqB_
PDB info PDB header:cell adhesionChain: B: PDB Molecule:plakoglobin; PDBTitle: interction of plakoglobin and beta-catenin with desmosomal2 cadherins
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1147..1150.........1160.........1170.........1180.........1190.........1200......
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Query Sequence  DHFNKVGCNPNEDVAIFAVDSLRQLSMKFLEKGELANFRFQKDFLRPFEHIMKKNRSPTI
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Template Sequence  PELTKLLNDEDPVVVTKAAMIVNQLSKKEASRRALMG. . . SPQLVAAVVRTMQNTSDLDT
Template Known Secondary structure  SS
TTS...
TT


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   145....150.........160.........170.........180. ........190.........200.
 
   1207..1210....... ..1220.........1230.........
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Query Sequence  RDMVIRCIAQM. . . . . . . . . . . . . . . VSSQAANIRSGWKNIFAVFHQA. . . . . . . . . . . .
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Template Conservation     
   
  
             
 
  

  
          
   
           
Template Sequence  ARCTTSILHNLSHHREGLLAIFKSGGIPALVRMLSSPVESVLFYAITTLHNLLLYQEGAK
Template Known Secondary structure  TTSTTTTS


TSTT
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   202.......210.........220.........230.........240.........250.........260.
 
   1240.........1250.........1260.........1270.........1280....
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Query Sequence  . . . . . . . . . . . . . . . ASDHDGNIVELAFQTTGHIVSTIFQHHFPAAIDSFQDAVKCLSEF
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Template Sequence  MAVRLADGLQKMVPLLNKNNPKFLAITTDCLQLLAYGNQESK. . . LIILANGGPQALVQI
Template Known Secondary structure  TTGGGTTSS
TT
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   262.......270.........280.........290.........300... ......310........
 
   1285....1290.........1300.........1310.........1320.........1330.........1340....
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Query Sequence  ACNAAFPDTSMEAIRLIRFCGKYVSERPRVLQEYTSDDMNVAPGDRVWVRGWFPILFELS
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Template Conservation 
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Template Sequence  MRNYSYEKLLWTTSRVLKVLSVCPSNKPAIVEAG. . . . . . . . . . . . . . . . . . . . GMQALG
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   319320.........330.........340.........350.. ......
 
   1345....1350.........1360.........1370.........1380.........1390.........1400....
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Query Sequence  CIINRCKLDVRTRGLTVMFEIMKSYGHTFAKHWWQDLFRIVFRIFDNMKLPEQQSEKSEW
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Template Conservation   
                  
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Template Sequence  KHLTSNSPRLVQNCLWTLRNLSDVATKQEGLES. . . . . . . . VLKILVNQLSVDDVNVLTC
Template Known Secondary structure  GGGG
S
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   359360.........370.........380.........390. ........400.........410
 
   1405....1410.........1420.........1430.........1440.........1450.........1460....
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Query Sequence  MTTTCNHALYAICDVFTQFYEALHEVLLSDVFAQLQWCVKQDNEQLARSGTNCLENLVIS
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Template Sequence  ATGTLSNLTCNNSKNKTLVTQNSGVEALIHAILRA. . . . . GDKDDITEPAVCALRHLTSR
Template Known Secondary structure  TTT
TTT.....TT
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   411........420.........430.........440..... ....450.........460.....
 
   1465....1470.........1480........
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Query Sequence  NGEKFSPAVWDETCNCMLDIFKTT
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Template Conservation                     
   
Template Sequence  HPEAEMAQNSVRLNYGIPAIVKLL
Template Known Secondary structure  STTTTGG
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   466...470.........480.........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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