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Job DescriptionA2A5R2
Confidence22.83%DateWed Jul 10 14:14:35 BST 2013
Rank95Aligned Residues304
% Identity11%Templatec3oqsA_
PDB info PDB header:protein transportChain: A: PDB Molecule:importin subunit alpha-2; PDBTitle: crystal structure of importin-alpha bound to a clic4 nls peptide
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1147..1150.........1160.........1170.........1180.........1190.........1200......
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Query Sequence  DHFNKVGCNPNEDVAIFAVDSLRQLSMKFLEKGELANFRFQKDFLRPFEHIMKKNRSPTI
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Template Sequence  EDIVKGINSNNLESQLQATQAARKLL. . SREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI
Template Known Secondary structure  TSS
T..TSSS


TTT
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   7980.........90.........100.... .....110.........120.........130......
 
   1207..1210.........1220........ .1230.........1240.........1250.........1260.....
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Query Sequence  RDMVIRCIAQMVSSQAANIRSG. WKNIFAVFHQAASDHDGNIVELAFQTTGHIVSTIFQH
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Template Sequence  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF
Template Known Secondary structure  TS
TTTT
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   137..140.........150.........160.........170.........180.........190......
 
   1266...1270.........1280.........1290.........1300.........1310.........1320.....
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Query Sequence  HFPAAIDSFQDAVKCLSEFACNAAFPDTSMEAIRLIRFCGKYVSERPRVLQEYTSDDMNV
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Template Sequence  R. . . DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR. . . . . . . . . . . . . . .
Template Known Secondary structure  ...TT
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   197 ..200.........210.........220.........230........
 
   1326...1330.........1340.........1350.........1360.........1370.........1380...
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Query Sequence  APGDRVWVRGWFPILFELSCIINRCKLDVRTRGLTVMFEIMKSYGHTFAKHWWQDLFR. .
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Template Sequence  NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG. . . . . PNERIEMVVKKG
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   239240.........250.........260.........270.........280. ........290...
 
   1384.....1390.........1400.... .....1410
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Query Sequence  IVFRIFDNMKLPEQQSEKSEW. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . MTTTCN
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Template Sequence  VVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQK
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T
S
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TTGGGGTT
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   294.....300.........310.........320.........330.........340.........350...
 
   1411........1420.........1430.........1440.........1450.........1460.........1470
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Query Sequence  HALYAICDVFTQFYEALHEVLLSDVFAQLQWCVKQDNEQLARSGTNCLENLVISNGEKFS
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Template Conservation                     
        
   
          
   
  
         
Template Sequence  EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQI
Template Known Secondary structure  TTS
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   354.....360.........370.........380.........390.........400.........410...
 
   1471....
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Query Sequence  PAVWD
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Template Sequence  VYLVH
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   414....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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