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Job DescriptionA2A5R2
Confidence76.81%DateWed Jul 10 14:14:35 BST 2013
Rank36Aligned Residues303
% Identity12%Templatec2c1tA_
PDB info PDB header:protein transport/membrane proteinChain: A: PDB Molecule:importin alpha subunit; PDBTitle: structure of the kap60p:nup2 complex
Resolution2.6 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1147..1150.........1160.........1170.........1180.........1190.........1200......
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Query Sequence  DHFNKVGCNPNEDVAIFAVDSLRQLSMKFLEKGELANFRFQKDFLRPFEHIMKKNRSPTI
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Template Sequence  PQMTQQLNSDDMQEQLSATVKFRQILSR. . EHRPPIDVVIQAGVVPRLVEFMRENQPEML
Template Known Secondary structure  TT
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TT
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TT
TTSTTS
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   90.........100.........110....... ..120.........130.........140.......
 
   1207..1210.........1220....... ..1230.........1240.........1250.........1260.
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Query Sequence  RDMVIRCIAQMVSSQAANIRS. GWKNIFAVFHQAASDHDGNIVELAFQTTGHIVST. . . .
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Template Conservation     
   
 

          
     
  
  
               
          
Template Sequence  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY
Template Known Secondary structure  TS
TT
S

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   148.150.........160.........170.........180.........190.........200.......
 
   1262.......1270.........1280...... .
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Query Sequence  . . . . . . . . . . . . IFQHHFPAAIDSFQDAVKCLSEFAC. . . . . . . . . . . . . . . . . . . . . . N
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Template Conservation           
                     
                      
     
Template Sequence  RDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY
Template Known Secondary structure  TT
GGGGS



STT


GGGTT
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   208.210.........220.........230.........240.........250.........260.......
 
   1288.1290.........1300.........1310.........1320... .
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Query Sequence  AAFPDTSMEAIRLIRFCGKYVSERPRVLQEYTSDDM. . . . . . . . . . . . . . . . . . . . . . . N
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Template Sequence  SMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV
Template Known Secondary structure 
S
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TTTT
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T
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   268.270.........280.........290.........300.........310.........320.......
 
   1325....1330.........1340.........1350.........1360.........1370.........1380...
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Query Sequence  VAPGDRVWVRGWFPILFELSCIINRCKLDVRTRGLTVMFEIMKSYGHTFAKHWWQDLFR.
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Template Sequence  TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG. . . . . NTEQIQAVIDA
Template Known Secondary structure  TS
TTTT
SSTTTTS.....
T
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   328.330.........340.........350.........360.........370. ........380..
 
   1384.....1390.........1400.........1410.........1420.........1430.........1440..
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Query Sequence  . IVFRIFDNMKLPEQQSEKSEWMTTTCNHALYAICDVFTQFYEALHEVLLSDVFAQLQWC
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Template Sequence  NLIPPLVKLLEVAEDKT. . . . . . KKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDL
Template Known Secondary structure  T
S
......GGGTT
TT
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   383......390......... 400.........410.........420.........430......
 
   1443......1450.........1460..
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Query Sequence  VKQDNEQLARSGTNCLENLV
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Template Conservation 
   
       
  
  

Template Sequence  LEIADNRIIEVTLDALENIL
Template Known Secondary structure  TTSS
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   437..440.........450......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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