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Job DescriptionA2A5R2
Confidence39.15%DateWed Jul 10 14:14:35 BST 2013
Rank68Aligned Residues306
% Identity10%Templatec1wa5B_
PDB info PDB header:nuclear transportChain: B: PDB Molecule:importin alpha subunit; PDBTitle: crystal structure of the exportin cse1p complexed with its2 cargo (kap60p) and rangtp
Resolution2.0 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1116...1120.........1130.........1140.........1150.........1160.........1170.....
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Query Sequence  RMFSLQKIVEISYYNMNRIRLQWSRIWHVIGDHFNKVGCNPNEDVAIFAVDSLRQLSMKF
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Template Sequence  QLEAAWALTNIASGTSAQTKVVVDAD. . . AVPLFIQLLYTGSVEVKEQAIWALGNV. . . A
Template Known Secondary structure  TTS
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   148.150.........160.........170... ......180.........190.........200 .
 
   1176...1180.........1190.........1200.........1210.........1220........ .1230....
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Query Sequence  LEKGELANFRFQKDFLRPFEHIMKKNRSPTIRDMVIRCIAQMVSSQAANIRSG. WKNIFA
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Template Sequence  GDSTDYRDYVLQCNAMEPILGLFN. SNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALP
Template Known Secondary structure  TT
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   202.......210.........220..... ....230.........240.........250.........260
 
   1235....1240.........1250.........1260.........1270.........1280.........1290....
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Query Sequence  VFHQAASDHDGNIVELAFQTTGHIVSTIFQHHFPAAIDSFQDAVKCLSEFACNAAFPDTS
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Template Sequence  TLAKLIYSMDTETLVDACWAISYLSDGPQEAI. . . QAVIDVRIPKRLVELLS. HESTLVQ
Template Known Secondary structure  TT


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   261........270.........280.........290.. .......300......... 310......
 
   1295....1300.........1310.........1320.........1330.........1340.........1350....
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Query Sequence  MEAIRLIRFCGKYVSERPRVLQEYTSDDMNVAPGDRVWVRGWFPILFELSCIINRCKLDV
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Template Sequence  TPALRAVGNIVTGN. . . . . . . . . . . . . . . . . . . DLQTQVVINAGVLPALRLLLSSPKENI
Template Known Secondary structure  TTS
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   317..320.........330 .........340.........350.......
 
   1355....1360.........1370.........1380... ......1390.........1400.........1410..
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Query Sequence  RTRGLTVMFEIMKSYGHTFAKHWWQDLFR. . IVFRIFDNMKLPEQQSEKSEWMTTTCNHA
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Template Sequence  KKEACWTISNITAG. . . . . NTEQIQAVIDANLIPPLVKLLEVAEYKT. . . . . . KKEACWA
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   358.360.........370. ........380.........390......... 400......
 
   1413......1420.........1430.........1440.........1450.........1460..
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Query Sequence  LYAICDVFTQFYEALHEVLLSDVFAQLQWCVKQDNEQLARSGTNCLENLV
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Template Sequence  ISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENIL
Template Known Secondary structure  TTT
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   407..410.........420.........430.........440.........450......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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