Return to main results Retrieve Phyre Job Id

Job DescriptionA2A5R2
Confidence24.64%DateWed Jul 10 14:14:35 BST 2013
Rank87Aligned Residues309
% Identity11%Templatec1pjmB_
PDB info PDB header:protein transportChain: B: PDB Molecule:importin alpha-2 subunit; PDBTitle: mouse importin alpha-bipartite nls from human2 retinoblastoma protein complex
Resolution2.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1147..1150.........1160.........1170.........1180.........1190.........1200......
Predicted Secondary structure 













Query SS confidence 



























































Query Sequence  DHFNKVGCNPNEDVAIFAVDSLRQLSMKFLEKGELANFRFQKDFLRPFEHIMKKNRSPTI
Query Conservation    
  
    
  
   


 
 

    
   

    

   
 

  

  
    
Alig confidence 

























..































Template Conservation    

  
 
 
      
   
  

..          
   
 
  

 

       
Template Sequence  EDIVKGINSNNLESQLQATQAARKLL. . SREKQPPIDNIIRAGLIPKFVSFLGKTDCSPI
Template Known Secondary structure  SS
T..TSSS


TT
T
GGG
Template Predicted Secondary structure 




..












Template SS confidence 



























































   7980.........90.........100.... .....110.........120.........130......
 
   1207..1210.........1220.........1230. ........1240.........1250.........1260.....
Predicted Secondary structure 



.



Query SS confidence 
























.

































Query Sequence  RDMVIRCIAQMVSSQAANIRSGWKN. IFAVFHQAASDHDGNIVELAFQTTGHIVSTIFQH
Query Conservation   
 

 

  

      
 


  .

 

  

      

  

  
 

  
 
  
Alig confidence 
























.

































Template Conservation     
   
 

                   
  
                          
Template Sequence  QFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAF
Template Known Secondary structure  TS
TTTT
S
T
Template Predicted Secondary structure 















Template SS confidence 



























































   137..140.........150.........160.........170.........180.........190......
 
   1266...1270.........1280.........1290.........1300.........1310.........1320.....
Predicted Secondary structure 




















Query SS confidence 



























































Query Sequence  HFPAAIDSFQDAVKCLSEFACNAAFPDTSMEAIRLIRFCGKYVSERPRVLQEYTSDDMNV
Query Conservation          
 
 
  
  
       



 

 

    
 
                 
Alig confidence 
...














































.........
Template Conservation   ...        
  
  
                    
           .........
Template Sequence  R. . . DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAP. . . . . . . . .
Template Known Secondary structure  ...TT
T
SS
GGGS
S


SS

.........
Template Predicted Secondary structure  ...












.........
Template SS confidence 



























































   197 ..200.........210.........220.........230.........240....
 
   1326...1330.........1340.........1350.........1360.. ....
Predicted Secondary structure 





...................
Query SS confidence 




































. . . . . . . . . . . . . . . . . . .



Query Sequence  APGDRVWVRGWFPILFELSCIINRCKLDVRTRGLTVM. . . . . . . . . . . . . . . . . . . FEIM
Query Conservation            
 


  
  
  
 
 


  

 

...................
 

Alig confidence  ......






























...................



Template Conservation  ......       
   
                  
                      
Template Sequence  . . . . . . PLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL
Template Known Secondary structure  ......
TT
S
TSS
TTT
Template Predicted Secondary structure  ......










Template SS confidence 



























































   245....250.........260.........270.........280.........290........
 
   1367..1370.........1380.........1390.........1400.... .....1410.....
Predicted Secondary structure 








...........
Query SS confidence 





































. . . . . . . . . . .










Query Sequence  KSYGHTFAKHWWQDLFRIVFRIFDNMKLPEQQSEKSEW. . . . . . . . . . . MTTTCNHALYA
Query Conservation     
  
    
  
  




               
...........   
   

  
Alig confidence 





































...........










Template Conservation    
                  
                                      
Template Sequence  VKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWT
Template Known Secondary structure  T
S
TTS
TTGGGGTT
SS
Template Predicted Secondary structure 
















Template SS confidence 



























































   299300.........310.........320.........330.........340.........350........
 
   1416...1420.........1430.........1440.........1450.........1460.........1470.....
Predicted Secondary structure 









Query SS confidence 



























































Query Sequence  ICDVFTQFYEALHEVLLSDVFAQLQWCVKQDNEQLARSGTNCLENLVISNGEKFSPAVWD
Query Conservation 
  

  

  
    
   
 

  

 
  
 


 
  

  

   
  


  
 
Alig confidence 



























































Template Conservation                      
  
   
          
   
  
           
  
Template Sequence  MSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVH
Template Known Secondary structure  TTS
TT
SS
S
Template Predicted Secondary structure 















Template SS confidence 



























































   359360.........370.........380.........390.........400.........410........
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D