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Job DescriptionA2A5R2
Confidence93.71%DateWed Jul 10 14:14:35 BST 2013
Rank23Aligned Residues716
% Identity11%Templatec3w3zA_
PDB info PDB header:protein transport/nuclear proteinChain: A: PDB Molecule:importin subunit beta-3; PDBTitle: crystal structure of kap121p bound to rangtp
Resolution2.70 Å
Model Dimensions (Å)X:84.862 Y:100.734 Z:71.584

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   905....910.........920.........930.........940.........950.........960....
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Query Sequence  WTPLLAAYSIGLQNCDDTEVASLCLEGIRCAVRIACIFGMQLERDAYVQALARFSLLTAS
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Template Sequence  WPELLQALIESL. KSGNPNFRESSFRILTT. . . VPYLITLPIFQS. . . . . . . . . . . . . . .
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GGGG

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   137..140........ .150.........160..... ....170.......
 
   965....970.........980.........990.........1000.........1010.........1020....
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Query Sequence  SSITEMKQKNIDTIKTLITVAHTDGNYLGNSWHEILKCISQLELAQLIGTGVKTRYLSGS
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Template Sequence  GFTDASDNVKIAAVTAFVGYFKQLPKSEWSKLGILLPSLLNSL. . . . . . . . . . . . . . . . .
Template Known Secondary structure  TT
S
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GGGTTTT.................
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   185....190.........200.........210.........220.......
 
   1025....1030.........1040.........1050.........1060.........1070.........1080....
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Query Sequence  GREREGSLKGHSLAGEEFMGLGLGNLVSGGVDKRQMASFQESVGETSSQSVVVAVDRIFT
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Template Conservation  ....................................                     
  
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . PRFLDDGKDDALASVFESLIELVE
Template Known Secondary structure  ....................................TT
T
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   228.230.........240.........250.
 
   1085....1090.........1100.........1110.........1120.........1130.........1140....
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Query Sequence  GSTRLDGNAIVDFVRWLCAVSMDELASPHHPRMFSLQKIVEISYYNMNRIRLQWSRIWHV
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Template Conservation                  
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Template Sequence  LAPKLFKDXFDQIIQFTDXVIKNKDLEP. PARTTALELLTVFSENAPQXCKSNQNYGQTL
Template Known Secondary structure  T
GGGGGGG
TTS
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   252.......260.........270......... 280.........290.........300.........310
 
   1145....1150... ......1160.........1170.........1180......
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Query Sequence  IGDHFNKVG. . . . . . . . . . . . . . . . . . CNPNEDVAIFAVDSLRQLSMKFLEKGELANFRF
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Template Sequence  VXVTLIXXTEVSIDDDDAAEWIESDDTDDEEEVTYDHARQALDRVALKLGGEY. . . . . . .
Template Known Secondary structure  T

STT
TT
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TT

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   311........320.........330.........340.........350.........360...
 
   1187..1190.........1200.........1210.........1220.........1230.........1240......
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Query Sequence  QKDFLRPFEHIMKKNRSPTIRDMVIRCIAQMVSSQAANIRSGWKNIFAVFHQAASDHDGN
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Template Conservation          
                  
                 
   
   
      
Template Sequence  LAAPLFQYLQQXITSTEWRERFAAXXALSSAAEGCADVLIGEIPKILDXVIPLINDPHPR
Template Known Secondary structure  T
S
TTTTTSSGGGGG
SS
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   364.....370.........380.........390.........400.........410.........420...
 
   1247..1250.........1260.........1270.........1280.........1290.........1300......
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Query Sequence  IVELAFQTTGHIVSTIFQHHFPAAIDSFQDAVKCLSEFACNAAFPDTSMEAIRLIRFCGK
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Template Sequence  VQYGCCNVLGQISTDFSPFI. . . QRTAHDRILPALISKLTSECTSRVQTHAAAALVNFSE
Template Known Secondary structure  TTT...TSTTS
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   424.....430.........440... ......450.........460.........470.........480
 
   1307..1310.........1320.........1330.........1340.........1350.........1360......
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Query Sequence  YVSERPRVLQEYTSDDMNVAPGDRVWVRGWFPILFELSCIINRCKLDVRTRGLTVMFEIM
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Template Conservation    ...................        
      
   
              
  
 
Template Sequence  FA. . . . . . . . . . . . . . . . . . . SKDILEPYLDSLLTNLLVLLQSNKLYVQEQALTTIAFIA
Template Known Secondary structure  T
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GGGT
SST
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   481. .......490.........500.........510.........520.
 
   1367..1370.........1380.........1390.........1400.........1410.........1420......
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Query Sequence  KSYGHTFAKHWWQDLFRIVFRIFDNMKLPEQQSEKSEWMTTTCNHALYAICDVFTQFYEA
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Template Conservation             .  
   
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Template Sequence  EAAKNKFIKYY. DTLXPLLLNVLKN. . . . . . . . . . . . . . SVLKGKCXECATLIGFAVGKE
Template Known Secondary structure  TTGGGT.

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   522.......530.. .......540..... ....550.........560......
 
   1427..1430.........1440.........1450.........1460.........1470.........1480......
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Query Sequence  LHEVLLSDVFAQLQWCVKQDNEQLARSGTNCLENLVISNGEKFSPAVWDETCNCMLDIFK
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Template Conservation          
   
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Template Sequence  KFHEHSQELISILVA. LQNSDDALRSYLEQSWSRICRILGDDFVPLLPIVIPPLLITAKA
Template Known Secondary structure  .T


GGGGGGGTT
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   572.......580...... ...590.........600.........610.........620.........630
 
   1487..1490.........1500.........1510.........1520.........1530.........1540......
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Query Sequence  TTIPHVLLTWRPAGMEEEVSDRHLDVDLDRQSLSSIDRNASERGQSQLSNPTDDSWKGAP
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Template Conservation                                  
          
   
            
Template Sequence  TQDVGLIEEEEAANFQQYPDWDVVQVQGKHIAIHTSVLDDKVSAXELLQSYATLLRGQFA
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TTGGG
TT
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GGGG
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   635....640.........650.........660.........670.........680.........690....
 
   1547..1550.........1560 .........1570.........1580.........1590.........
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Query Sequence  YAHQKLLASLLIKC. . . . . . . VVQLELIQTIDNIVFYPATSKKEDAEHMVAAQQDTLDAE
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Template Sequence  VYVKEVXEEIALPSLDFYLHDGVRAAGATLIPILLSCLL. . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTT
TT
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   695....700.........710.........720.........730...
 
   1600.........1610.........1620.........1630.........1640.........1650.........
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Query Sequence  IHIETENQGMYKFMSSQHLFKLLDCLQESHSFSKAFNSNYEQRTVLWRAGFKGKSKPNLL
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Template Conservation  .....                
   
       
       
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Template Sequence  . . . . . AATEELVLLWHKASSKLIGGLXSEPXPEITQVYHNSLVNGIKVXGDN. CLSEDQL
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TT.
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   734.....740.........750.........760.........770.........780 .......
 
   1660.........1670.........1680.........1690.... .....1700.......
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Query Sequence  KQETSSLACCLRILFRMYVDENRRDSWDEIQQRLL. . . . . . . . . . . . RVCSEALAYFITV
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Template Conservation            
                       
  
               
      
Template Sequence  AAFTKGVSANLTDTYERXQDRFTDEDLLDEINKSIAAVLKTTNGHYLKNLENIWPXINTF
Template Known Secondary structure  TT

TTTTT
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   792.......800.........810.........820.........830.........840.........850.
 
   1708.1710.........1720.........1730.........1740.........1750.........1760.......
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Query Sequence  NSESHREAWTSLLLLLLTKTLKISDEKFKAHASMYYPYLCEIMQFDLIPELRAVLRKFFL
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Template Sequence  LLPILVIFALVVIGDLIQYEQT. . . . . . ASXKNAFIPKVTECLISPDA. RIRQAASYIIG
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   868.870.........880......... 890.........900......... 910.........920
 
   1768.1770..
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Query Sequence  RIGLV
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Template Conservation   
   
Template Sequence  VCAQY
Template Known Secondary structure 
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   926...930
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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