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Job DescriptionA2A5R2
Confidence90.15%DateWed Jul 10 14:14:35 BST 2013
Rank28Aligned Residues567
% Identity10%Templatec2ot8B_
PDB info PDB header:transport proteinChain: B: PDB Molecule:transportin-1; PDBTitle: karyopherin beta2/transportin-hnrnpm nls complex
Resolution3.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1134.....1140.........1150.........1160.........1170.........1180.........1190...
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Query Sequence  IRLQWSRIWHVIGDHFNKVGCNPNEDVAIFAVDSLRQLSMKFLEKGELANFRFQKDFLRP
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Template Conservation          

 
   
   
           
  
  
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Template Sequence  ASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEPLN. . . . . . . . IMIPK
Template Known Secondary structure  TTTTTT
STTTTTS
S


GG........GG
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   118.120.........130.........140.........150.........160.... .....
 
   1194.....1200.........1210.........1220.........1230.........1240.........1250...
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Query Sequence  FEHIMKKNRSPTIRDMVIRCIAQMVSSQAANIRSGWKNIFAVFHQAASDHDGNIVELAFQ
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Template Conservation 
   
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Template Sequence  FLQFFK. HSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCR
Template Known Secondary structure  TT.
S
GGGTTTT
TSS
S
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   179180.... .....190.........200.........210.........220.........230.......
 
   1254.....1260........ .1270.........1280.........1290........
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Query Sequence  TTGHIVSTIFQHHFP. . . . . . . . . . . . . . . AAIDSFQDAVKCLSEFACNAAFPDTSMEAI
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Template Conservation                                            
                 
Template Sequence  ALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHL
Template Known Secondary structure 
GGGT
SSTSTTGGGT
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   238.240.........250.........260.........270.........280.........290.......
 
   12991300.........1310.........1320.......
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Query Sequence  RLIRFCGKYVSERPRVLQEYTSDDMNVAP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Conservation    
   
                              
  
                   
Template Sequence  PKLIPVLVNGMKYSDIDIILLKDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKEL
Template Known Secondary structure  TS
TT





SS
S
GGG
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   298.300.........310.........320.........330.........340.........350.......
 
   1328.1330.........1340.........1350.........1360.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . GDRVWVRGWFPILFELSCIINRCKLDVRTRGLTVMFEI
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Template Conservation                 
                                

      
   
Template Sequence  LFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRY
Template Known Secondary structure  S
SSTGGGTT
SSTT
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   406...410.........420.........430.........440.........450.........460.....
 
   1366...1370.........1380.........1390.........1400.........1410.........1420.....
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Query Sequence  MKSYGHTFAKHWWQDLFRIVFRIFDNMKLPEQQSEKSEWMTTTCNHALYAICDVFTQFYE
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Template Conservation                              ............  
                 
Template Sequence  AHWVVSQPPDTYLKPLMTELLKRILDSN. . . . . . . . . . . . KRVQEAACSAFATLEEEACT
Template Known Secondary structure  S
TTTTT
SS............GG
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   466...470.........480.........490... ......500.........510...
 
   1426...1430.........1440.........1450.........1460....... ..1470.........1480....
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Query Sequence  ALHEVLLSDVFAQLQWCVKQDNEQLARSGTNCLENLVISNGE. KFSPAVWDETCNCMLDI
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Template Conservation       .   
   
                                      
       
Template Sequence  ELVPY. LAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQK
Template Known Secondary structure  GGGGG.

GGGG
S
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   514.... .520.........530.........540.........550.........560.........570..
 
   1485... .1490.........1500.........1510.........1520.........1530....
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Query Sequence  FKTT. . . . . . . . . . IPHVLLTWRPAGMEEEVSDRHLDVDLDRQSLSSIDRNASERGQSQL
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Template Conservation                                                              
Template Sequence  WNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQ
Template Known Secondary structure  S
TT
TTSSSGGG
TTT
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   573......580.........590.........600.........610.........620.........630..
 
   1535....1540.........1550.........1560.........1570.........1580.........1590....
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Query Sequence  SNPTDDSWKGAPYAHQKLLASLLIKCVVQLELIQTIDNIVFYPATSKKEDAEHMVAAQQD
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Template Conservation                                          ....................
Template Sequence  YEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLM. . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  S



TGGGGTS
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   633......640.........650.........660.........670..
 
   1595....1600.........1610.........1620.........1630.........1640.........1650....
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Query Sequence  TLDAEIHIETENQGMYKFMSSQHLFKLLDCLQESHSFSKAFNSNYEQRTVLWRAGFKGKS
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Template Conservation  ............          
       
                     
   
   
Template Sequence  . . . . . . . . . . . . YQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPE
Template Known Secondary structure  ............
SS
GGGT

TT
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   673......680.........690.........700.........710.........720
 
   1655....1660.........1670.........1680.........1690.........1700.........1710....
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Query Sequence  KPNLLKQETSSLACCLRILFRMYVDENRRDSWDEIQQRLLRVCSEALAYFITVNSESHRE
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Template Conservation         
   
  
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Template Sequence  FISVCNNATWAIGEISIQMG. . . . . . . . . IEMQPYIPMVLHQLVEIIN. . . . . . RPNTPK
Template Known Secondary structure  SG.........GGGGGG......
TT

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   721........730.........740 .........750......... 760.....
 
   1715....1720.........1730.........1740.........1750.........1760.........
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Query Sequence  AWTSLLLLLLTKTLKISDEKFKAHASMYYPYLCEIMQFDLIPELRAVLRKFFLRI
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Template Conservation   
       
  
           
          
               
  
Template Sequence  TLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEKDSAFRGICTM
Template Known Secondary structure 
GGGTTS
S
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   766...770.........780.........790.........800.........810.........820
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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