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Job DescriptionA2A5R2
Confidence20.44%DateWed Jul 10 14:14:35 BST 2013
Rank100Aligned Residues317
% Identity10%Templatec3a6pA_
PDB info PDB header:protein transport/nuclear protein/rnaChain: A: PDB Molecule:exportin-5; PDBTitle: crystal structure of exportin-5:rangtp:pre-mirna complex
Resolution2.92 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1142.......1150.........1160.........1170 .........1180.........1190.........1200
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Query Sequence  WHVIGDHFNKVGCNPNEDVAIFAVDSLRQ. LSMKFLEKGELANFRFQKDFLRPFEHIMKK
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Template Sequence  CVPCGLRL. . AEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIANGTLN
Template Known Secondary structure  ..TSTTS
SGGGS
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   47..50.... .....60.........70.........80.........90.........100....
 
   1201.. ......1210.........1220.........1230.........1240.........1250........
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Query Sequence  NRS. . PTIRDMVIRCIAQMVSSQAANIRSGWKNIFAVFHQAASDHDGNIVELAFQTTGHI
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Template Sequence  ILEEENHIKDALSRIVVEMIKREWPQ. . . HWPDMLIELDTLSK. QGETQTELVMFILLRL
Template Known Secondary structure  TTSS
STT...T
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   105....110.........120.........130 .........140.... .....150.........160
 
   12591260.. .......1270.........1280.........1290.......
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Query Sequence  VSTI. . . . . . . . . . . . . . . . . . . . . FQHHFPAAIDSFQDAVKCLSEFACNAAFPDTSMEA
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Template Sequence  AEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQAN
Template Known Secondary structure  TS

S
TTT
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   161........170.........180.........190.........200.........210.........220
 
   1298.1300.........1310.........1320.........1330......... 1340.........
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Query Sequence  IRLIRFCGKYVSERPRVLQEYTSDDMNVAPGDRVWVRGWFPI. . . . . . . . LFELSCIINR
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Template Sequence  CRVGVAALNTLAGYID. . . . . . . . . . . . . . . . . . . . . . WVSMSHITAENCKLLEILCLLL
Template Known Secondary structure  TTTT......................TS
TTTSGG
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   221........230...... ...240.........250........
 
   1350.........1360.........1370. ........1380.........1390.........1400
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Query Sequence  CKLDVRTRGLTVMFEIMKSYGH. . . . . . . . . TFAKHWWQDLFRIVFRIFDNMKLPEQQSE
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Template Sequence  NEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTA. DGGGLVEKHYV
Template Known Secondary structure  G
TTTT

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GGGGGGGST
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   259260.........270.........280.........290.........300...... ...310.......
 
   1401........1410.........1420.........1430.........1440.........1450.........1460
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Query Sequence  KSEWMTTTCNHALYAICDVFTQFYEALHEVLLSDVFAQLQWCVKQDNEQLARSGTNCLEN
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Template Sequence  FLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGA
Template Known Secondary structure  T
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   318.320.........330.........340.........350.........360.........370.......
 
   1461........1470.........1480.......
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Query Sequence  LVISNGEKFSPAVWDETCNCMLDIFKT
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Template Sequence  LFRHEILSRDPLLLAIIPKYLRASMTN
Template Known Secondary structure  S
TTTTT
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   378.380.........390.........400....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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