Return to main results Retrieve Phyre Job Id

Job DescriptionA2A5R2
Confidence97.06%DateWed Jul 10 14:14:35 BST 2013
Rank13Aligned Residues355
% Identity12%Templatec4a0cB_
PDB info PDB header:cell cycleChain: B: PDB Molecule:cullin-associated nedd8-dissociated protein 1; PDBTitle: structure of the cand1-cul4b-rbx1 complex
Resolution3.80 Å
Model Dimensions (Å)X:56.861 Y:86.924 Z:51.040

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1090.........1100.........1110..... ....1120.........1130.........1140.......
Predicted Secondary structure 






..


Query SS confidence 

























. .































Query Sequence  DGNAIVDFVRWLCAVSMDELASPHHP. . RMFSLQKIVEISYYNMNRIRLQWSRIWHVIGD
Query Conservation     

  

 

  

  

     
..
 
 
 

 

   
  

   
  

  
  
Alig confidence 

























..


















....








Template Conservation             
   
               
   
  
        ....       
 
Template Sequence  GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLL. . . . VNFHPSILT
Template Known Secondary structure 

S
TTSTTSTTS
GGG....TTT
Template Predicted Secondary structure 



....
Template SS confidence 



























































   123......130.........140.........150.........160......... 170........
 
   1148.1150.........1160.........1170.........1180.........1190.........1200.......
Predicted Secondary structure 













Query SS confidence 



























































Query Sequence  HFNKVGCNPNEDVAIFAVDSLRQLSMKFLEKGELANFRFQKDFLRPFEHIMKKNRSPTIR
Query Conservation   
  
    
  
   


 
 

    
   

    

   
 

  

  
    
 
Alig confidence 





























.......






















Template Conservation   
   
      

  
   
  
      .......      
  

  
         
Template Sequence  CLLPQLTSPRLAVRKRTIIALGHLVMSCGN. . . . . . . IVFVDLIEHLLSELSKNDSMSTT
Template Known Secondary structure  GGGSS
S
S
T.......TS
S
Template Predicted Secondary structure 





.......




Template SS confidence 



























































   179180.........190.........200........ .210.........220.........230.
 
   1208.1210.........1220.........1230.........1240.........1250.........1260.......
Predicted Secondary structure 









Query SS confidence 



























































Query Sequence  DMVIRCIAQMVSSQAANIRSGWKNIFAVFHQAASDHDGNIVELAFQTTGHIVSTIFQHHF
Query Conservation 
 

 

  

      
 


  

 

  

      

  

  
 

  
 
    
Alig confidence 



























































Template Conservation        
                     
                               
Template Sequence  RTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVY
Template Known Secondary structure 
SGGGGTTTS

STT


Template Predicted Secondary structure 







Template SS confidence 



























































   232.......240.........250.........260.........270.........280.........290.
 
   1268.1270.........1280.........1290.........1300.........1310.........1320...
Predicted Secondary structure 
















....
Query SS confidence 























































. . . .
Query Sequence  PAAIDSFQDAVKCLSEFACNAAFPDTSMEAIRLIRFCGKYVSERPRVLQEYTSDDM. . . .
Query Conservation        
 
 
  
  
       



 

 

    
 
               ....
Alig confidence 
....


















































....
Template Conservation   ....        
           

                            
    
Template Sequence  P. . . . HVSTIINICLKYLTYDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRF
Template Known Secondary structure  S....TS







GGGT




TGG
Template Predicted Secondary structure  ....












Template SS confidence 



























































   292 .......300.........310.........320.........330.........340.......
 
   1324.....1330.........1340.........1350.........1360.
Predicted Secondary structure  ......................







Query SS confidence  . . . . . . . . . . . . . . . . . . . . . .





































Query Sequence  . . . . . . . . . . . . . . . . . . . . . . NVAPGDRVWVRGWFPILFELSCIINRCKLDVRTRGLTV
Query Conservation  ......................            
 


  
  
  
 
 


  

 
Alig confidence  ......................





































Template Conservation                
  
                   
                      
Template Sequence  KEREENVKADVFHAYLSLLKQTRPETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNM
Template Known Secondary structure  G
SSS



TT
S
Template Predicted Secondary structure 















Template SS confidence 



























































   384.....390.........400.........410.........420.........430.........440...
 
   1362.......1370.........1380.........1390.........1400.........1410.........1420.
Predicted Secondary structure 








Query SS confidence 



























































Query Sequence  MFEIMKSYGHTFAKHWWQDLFRIVFRIFDNMKLPEQQSEKSEWMTTTCNHALYAICDVFT
Query Conservation 

 

   
  
    
  
  




               
   
   

  
  

 
Alig confidence 













....


















.......















Template Conservation 
  
          ....    
   
   
      .......                
Template Sequence  LTELVNVLPGALTQ. . . . HIPVLVPGIIFSLNDKSSS. . . . . . . SNLKIDALSCLYVILC
Template Known Secondary structure  STTTTTT....TSS


.......
Template Predicted Secondary structure  ....



.......
Template SS confidence 



























































   458.460.........470. ........480.........490 .........500......
 
   1422.......1430.........1440.........1450.........1460.........1470
Predicted Secondary structure 









Query SS confidence 
















































Query Sequence  QFYEALHEVLLSDVFAQLQWCVKQDNEQLARSGTNCLENLVISNGEKFS
Query Conservation   

  
    
   
 

  

 
  
 


 
  

  

   
  

Alig confidence 
















































Template Conservation               
   
          
   

               
Template Sequence  NHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQ
Template Known Secondary structure  SS
TTTTS
SSS
SSS
Template Predicted Secondary structure 






Template SS confidence 
















































   507..510.........520.........530.........540.........550.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D