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Job DescriptionA2A5R2
Confidence97.39%DateWed Jul 10 14:14:35 BST 2013
Rank12Aligned Residues311
% Identity13%Templatec1m5nS_
PDB info PDB header:protein transportChain: S: PDB Molecule:importin beta-1 subunit; PDBTitle: crystal structure of heat repeats (1-11) of importin b2 bound to the non-classical nls(67-94) of pthrp
Resolution2.90 Å
Model Dimensions (Å)X:59.673 Y:83.751 Z:47.444

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1142.......1150.........1160.........1170.........1180.........1190.........1200.
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Query Sequence  WHVIGDHFNKVGCNPNEDVAIFAVDSLRQLSMKFLEKGELANFRFQKDFLRPFEHIMKKN
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Template Conservation     
       
                                       
   
    
Template Sequence  WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEE
Template Known Secondary structure 
TTS
SS

TS
TTT
SS
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   126...130.........140.........150.........160.........170.........180.....
 
   1202.......1210.........1220......... 1230.........1240.........1250.........
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Query Sequence  RSPTIRDMVIRCIAQMVSSQAANIRSGW. . KNIFAVFHQAASDHDGNIVELAFQTTGHIV
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Template Conservation      
   
                                              
  
 
Template Sequence  PSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM
Template Known Secondary structure  S
GGG
SGGG
S
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   186...190.........200.........210.........220.........230.........240.....
 
   1260.........1270.........1280.........1290.........1300.........1310.........
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Query Sequence  STIFQHHFPAAIDSFQDAVKCLSEFACNAAFPDTSMEAIRLIRFCGKYVSERPRVLQEYT
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Template Conservation       ....         
              
   
   
                  
Template Sequence  SLYYQ. . . . YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAA
Template Known Secondary structure 
TT....GGGGTTTTTTT
SSTT
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   246...250 .........260.........270.........280.........290.........300.
 
   1320....... ..1330...
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Query Sequence  SDDMNVAP. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GDRVWV
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Template Conservation                                                    
         
Template Sequence  EQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED
Template Known Secondary structure  TTTS

SS



TT


SS

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T
T
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   302.......310.........320.........330.........340.........350.........360.
 
   1334.....1340.........1350.........1360.........1370.........1380.........1390...
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Query Sequence  RGWFPILFELSCIINRCKLDVRTRGLTVMFEIMKSYGHTFAKHWWQDLFRIVFRIFDNMK
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Template Sequence  DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMK. . .
Template Known Secondary structure  TGGGSS
SSTTTSSS
GGGTTTTT...
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   362.......370.........380.........390.........400.........410........
 
   1394.....1400.........1410.........1420.........1430.........1440.........1450...
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Query Sequence  LPEQQSEKSEWMTTTCNHALYAICDVFTQFYEALHEVLLSDVFAQLQWCVKQDNEQLARS
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Template Sequence  . . . . . . DPSVVVRDTAAWTVGRICELLPEAAINDV. . YLAPLLQCLIEGLSA. EPRVASN
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SSS
SGGGS
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   419420.........430.........440....... ..450.........460.. .......
 
   1454.....1460........
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Query Sequence  GTNCLENLVISNGEK
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Template Conservation 
  

  
       
Template Sequence  VCWAFSSLAEAAYEA
Template Known Secondary structure  S
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   470.........480....
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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