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Job DescriptionA2A5R2
Confidence92.83%DateWed Jul 10 14:14:35 BST 2013
Rank25Aligned Residues334
% Identity8%Templatec1w63A_
PDB info PDB header:endocytosisChain: A: PDB Molecule:adapter-related protein complex 1 gamma 1 PDBTitle: ap1 clathrin adaptor core
Resolution4.0 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1118.1120.........1130.........1140.........1150.........1160.........1170.......
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Query Sequence  FSLQKIVEISYYNMNRIRLQWSRIWHVIGDHFNKVGCNPNEDVAIFAVDSLRQLSMKFLE
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Template Sequence  FTDKRIGYLGAMLLLDER. . . QDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEM.
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   7980.........90...... ...100.........110.........120.........130....
 
   1178.1180.........1190.........1200.........1210.........1220.........1230.......
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Query Sequence  KGELANFRFQKDFLRPFEHIMKKNRSPTIRDMVIRCIAQMVSSQAANIRSGWKNIFAVFH
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Template Sequence  . . . . . . . . . . CRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEM. . . . FLPATK
Template Known Secondary structure  ..........S


GGGGGG....GGGGTT
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   135....140.........150.........160.........170.... .....180
 
   1238.1240.........1250.........1260.........1270.........1280.........1290.......
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Query Sequence  QAASDHDGNIVELAFQTTGHIVSTIFQHHFPAAIDSFQDAVKCLSEFACNAAFPDTSMEA
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Template Sequence  NLLNEKNHGVLHTSVVLLTEMCERSPDMLAH. FRKLVPQLVRILKNLIMSGYSPEHDVSG
Template Known Secondary structure  TSTT




S.TTS


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   181........190.........200.........210. ........220.........230.........
 
   1298.1300.........1310.........1320.........1330....
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Query Sequence  IRLIRFCGKYVSERPRVLQEYTSDDMNVAPGDRVWVR. . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  ISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDI
Template Known Secondary structure  SS
TTT
TTTS

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   240.........250.........260.........270.........280.........290.........
 
   1335....1340.........1350.........1360.........1370.........1380.........
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Query Sequence  . . . . . GWFPILFELSCIINRCKLDVRTRGLTVMFEIMKSYGHTFAKHWWQDLFRIVFRIF
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Template Sequence  KSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQR. . . . . . . . . . . . HR
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SSTTTGG............G
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   300.........310.........320.........330.........340..... ..
 
   1390.........1400.........1410... ......1420.........1430.........1440..
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Query Sequence  DNMKLPEQQSEKSEWMTTTCNHAL. . . . . . . YAICDVFTQFYEALHEVLLSDVFAQLQWC
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Template Sequence  STIVDCLKDLDVSIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLA
Template Known Secondary structure  GGGSS


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   348.350.........360.........370.........380.........390.........400.......
 
   1443......1450.........1460.........1470.........1480...
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Query Sequence  VKQDNEQLARSGTNCLENLVISNGEKFSPAVWDETCNCMLD
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Template Sequence  AEKYAPS. KRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITN
Template Known Secondary structure  SS


.TGGGS
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   408.410.... .....420.........430.........440.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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