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Job DescriptionA2A5R2
Confidence65.16%DateWed Jul 10 14:14:35 BST 2013
Rank49Aligned Residues378
% Identity11%Templatec2x19B_
PDB info PDB header:nuclear transportChain: B: PDB Molecule:importin-13; PDBTitle: crystal structure of importin13 - rangtp complex
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1065....1070.........1080.........1090.........1100.........1110.... .....1120...
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Query Sequence  ESVGETSSQSVVVAVDRIFTGSTRLDGNAIVDFVRWLCAVSMDELASPHH. PRMFSLQKI
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Template Conservation            
      
                  
   
            
  
  
Template Sequence  SDEKEQFRIYRVDISDTLXYVYEXLGAELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGF
Template Known Secondary structure  TT


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   414.....420.........430.........440.........450.........460.........470...
 
   1124.....1130.........1140.........1150.........1160.........1170.........1180...
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Query Sequence  VEISYYNMNRIRLQWSRIWHVIGDHFNKVGCNPNEDVAIFAVDSLRQLSMKFLEKGELAN
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Template Sequence  QSIAETIDVNYSDVVPGLIGLIPRI. . . . . SISNVQLADTVXFTIGALSEWLADHPV. . .
Template Known Secondary structure  TTS

SS

SGGGS.....


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   474.....480.........490........ .500.........510.........520.....
 
   1184.....1190.........1200.........1210.........1220.........1230.........1240 .
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Query Sequence  FRFQKDFLRPFEHIMKKNRSPTIRDMVIRCIAQMVSSQAANIRSGWKNIFAVFHQAA. . S
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Template Sequence  . . . . . XINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLXKQ
Template Known Secondary structure  .....TTTTT
GGGTGGG
TTTTT
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   526...530.........540.........550.........560.........570.........580
 
   1242.......1250.........1260... ......1270.........1280.........1290.........1300
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Query Sequence  DHDGNIVELAFQTTGHIVSTIF. QHHFPAAIDSFQDAVKCLSEFACNAAFPDTSMEAIRL
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Template Conservation           
      
               
                           
Template Sequence  IHKTSQCXWLXQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHI
Template Known Secondary structure 
S
TTS
SS
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   581........590.........600.........610.........620.........630.........640
 
   1301........1310.........1320.........1330.........1340.........1350......
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Query Sequence  IRFCGKYVSERPRVLQEYTSDDMNVAPGDRVWVRGWFPILFELSCIINRCKLDVRT. . . .
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Template Sequence  LGLLSNLFTTL. . . . . . DISHHEGPNPVVVVLQQVF. QLIQKVLSKWLNDAQVVEAVCAI
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   641........650. ........660.........670 .........680.........690...
 
   1357..1360.........1370. ........1380.
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RGLTVMFEIMKSYGH. . TFAKHWWQDL
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Template Conservation                    
                
     
                  
Template Sequence  FEKSVKTLLDDFAPXVPQLCEXLGRXYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALF
Template Known Secondary structure  SSSTTGGGS

TT
TTT
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   709710.........720.........730.........740.........750.........760........
 
   1382.......1390.........1400.........1410.........1420....... ..1430.........
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Query Sequence  FRIVFRIFDNMKLPEQQSEKSEWMTTTCNHALYAICDVFTQFYEAL. . HEVLLSDVFAQL
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Template Sequence  LLVTSVTLTLFQQGPRDH. . . . . . PDIVDSFXQLLAQALKRKPDLFLCERLDVKAVFQCA
Template Known Secondary structure 
TTT
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GGGGG
TTS
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   769770.........780...... ...790.........800.........810.........820..
 
   1440.........1450.........1460........
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Query Sequence  QWCVKQDNEQLARSGTNCLENLVISNGEK
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Template Conservation     
              
  

      
Template Sequence  VLALKFPEAPTVKASCGFFTELLPRCGEV
Template Known Secondary structure  TT
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GGGTTSS
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   823......830.........840.........850.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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