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Job DescriptionA2A5R2
Confidence30.44%DateWed Jul 10 14:14:35 BST 2013
Rank80Aligned Residues334
% Identity11%Templatec2jkrL_
PDB info PDB header:endocytosisChain: L: PDB Molecule:ap-2 complex subunit alpha-2; PDBTitle: ap2 clathrin adaptor core with dileucine peptide rm(2 phosphos)qikrllse
Resolution2.98 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1118.1120.........1130.........1140.........1150.........1160.........1170.......
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Query Sequence  FSLQKIVEISYYNMNRIRLQWSRIWHVIGDHFNKVGCNPNEDVAIFAVDSLRQLSMKFLE
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Template Sequence  YTEKQIGYLFISVLVNSN. . . SELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREM.
Template Known Secondary structure  S



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   88.90.........100..... ....110.........120.........130.........140...
 
   1178.1180.........1190......... 1200.........1210.........1220.........1230......
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Query Sequence  KGELANFRFQKDFLRPFEHIMK. KNRSPTIRDMVIRCIAQMVSSQAANIRSGWKNIFAVF
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Template Sequence  . . . . . . . . . AEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPMG. . DWTSRV
Template Known Secondary structure  .........TT
TTS

TTTS


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   144.....150.........160.........170.........180...... ...190..
 
   1237..1240.........1250.........1260.........1270.........1280.......
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Query Sequence  HQAASDHDGNIVELAFQTTGHIVSTIFQHHFPAAIDSFQDAVKCLSEFACN. . . . . . . . .
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Template Sequence  VHLLNDQHLGVVTAATS. . . . LITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYT
Template Known Secondary structure  GGGG
SS....TTT
TTTS
SSSSTTT
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   193......200......... 210.........220.........230.........240........
 
   1288.1290.........1300.........1310.........1320.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . AAFPDTSMEAIRLIRFCGKYVSERPRVLQEYTSDDMNV
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Template Sequence  YYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPK. . . . . . . . . . . .
Template Known Secondary structure  TTSTTS
S
SSS

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   249250.........260.........270.........280.........290......
 
   1326...1330.........1340..... ....1350.........1360.........1370.........1380....
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Query Sequence  APGDRVWVRGWFPILFELSC. IINRCKLDVRTRGLTVMFEIMKSYGHTFAKHWWQDLFRI
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Template Sequence  SKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTL
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S


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   297..300.........310.........320.........330.........340.........350......
 
   1385.. ..1390.........1400.........1410... ......1420.......
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Query Sequence  VFR. . . . . IFDNMKLPEQQSEKSEWMTTTCNHAL. . . . . . . . . . . . YAICDVFTQFYEAL
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Template Sequence  ASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETA
Template Known Secondary structure  TT
SSS
SGGGGG

STT

TTTT
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   357..360.........370.........380.........390.........400.........410......
 
   1428.1430.........1440.........1450.........1460.........1470.........1480...
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Query Sequence  HEVLLSDVFAQLQWCVKQDNEQLARSGTNCLENLVISNGEKFSPAVWDETCNCMLD
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Template Sequence  DYSIREEIVLKVAILAEKYAVDYTWY. VDTILNLIRIAGDYVSEEVWYRVIQIVIN
Template Known Secondary structure 

SS.TTGGG

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   417..420.........430.........440.. .......450.........460.........470.
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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