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Job DescriptionA2A5R2
Confidence87.51%DateWed Jul 10 14:14:35 BST 2013
Rank33Aligned Residues347
% Identity11%Templated1xm9a1
SCOP infoalpha-alpha superhelix ARM repeat Plakophilin 1 helical region
Resolution2.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   10891090.........1100.........1110.........1120.........1130 .........1140.......
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Query Sequence  LDGNAIVDFVRWLCAVSMDELASPHHPRMFSLQKIVEISYYN. MNRIRLQWSRIWHVIGD
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Template Sequence  LTIPKAVQYLSS. . . . . . . . . . QDEKYQAIGAYYIQHTCFQDESAKQQVYQLG. . . . GIC
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   245....250...... ...260.........270.........280....... ..290
 
   1148.1150.........1160.........1170.........1180.........1190.........1200.......
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Query Sequence  HFNKVGCNPNEDVAIFAVDSLRQLSMKFLEKGELANFRFQKDFLRPFEHIMKKNRSPTIR
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Template Sequence  KLVDLLRSPNQNVQQAAAGALRNLV. . . FRSTTNKLETRRQNGIREAVSLLRRTGNAEIQ
Template Known Secondary structure  TTSS
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   291........300.........310..... ....320.........330.........340.......
 
   1208.1210.........1220. ........1230.........1240.........1250.........1260.
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Query Sequence  DMVIRCIAQMVSSQ. . . . . . AANIRSGWKNIFAVFHQAASDHDGNIVELAFQTTGHIVST
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Template Conservation    
   
  
                     
             
   
   
  
   
Template Sequence  KQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCVVDPEVFFNATGCLRNLSSA
Template Known Secondary structure  TSSSTTTT




TTS
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   348.350.........360.........370.........380.........390.........400.......
 
   1262.......1270.........1280.. .......1290.........1300.........1310..
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Query Sequence  IFQHHFPAAIDSFQDAVKCLS. . EFACNAAFPDTSMEAIRLIRFCGKYVSERP. . . . . . .
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Template Sequence  DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL
Template Known Secondary structure  TTSTTT
TT
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   417..420.........430.........440.........450.........460.........470......
 
   1313......1320........
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . RVLQEYTSDDMNVAPG
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Template Conservation      
                  
  
   
               
             
Template Sequence  EYNALPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG
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SS

GGGGGGS


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   477..480.........490.........500.........510.........520.........530......
 
   13291330.........1340.........1350.........1360.........1370.........1380... ....
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Query Sequence  DRVWVRGWFPILFELSCIINRCKLDVRTRGLTVMFEIMKSYGHTFAKHWWQDLFR. IVFR
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Template Sequence  MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR. . . . . . HPLLHRVMGNQVFPE
Template Known Secondary structure  TTS

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   565....570.........580.........590.........600... ......610........
 
   1388.1390.........1400.........1410.........1420.........1430.........1440......
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Query Sequence  IFDNMKLPEQQSEKSEWMTTTCNHALYAICDVFTQFYEALHEVLLSDVFAQLQWCVKQD.
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Template Sequence  VTRLLTSHTGNTSNS. . . EDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSA
Template Known Secondary structure  TTTS

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STT...TT
T


TT
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   619620.........630... ......640.........650.........660.........670.....
 
   1447..1450.........1460.
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Query Sequence  NEQLARSGTNCLENL
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Template Conservation     
   
   
  
Template Sequence  SPKAAEAARLLLSDM
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TT
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   676...680.........690
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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