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Job DescriptionA2A5R2
Confidence42.12%DateWed Jul 10 14:14:35 BST 2013
Rank66Aligned Residues208
% Identity11%Templatec2w3cA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:general vesicular transport factor p115; PDBTitle: globular head region of the human general vesicular2 transport factor p115
Resolution2.22 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1155....1160.........1170.........1180.........1190.........1200.........1210....
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Query Sequence  NPNEDVAIFAVDSLRQLSMKFLEKGELANFRFQKDFLRPFEHIMKKNRSPTIRDMVIRCI
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Template Sequence  RSDSEIIGYALDTLYNI. . . ISNSQFTEIFIKQQENVTLLLSLL. EEFDFHVRWPGVKLL
Template Known Secondary structure  TT
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STT.T


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   73......80......... 90.........100.........110... ......120........
 
   1215....1220......... 1230.........1240.........1250.........1260.........1270.
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Query Sequence  AQMVSSQAANIRSGW. . . KNIFAVFHQAASDHDGNIVELAFQTTGHIVSTIFQHHFPAAI
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Template Sequence  TSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQ. . . KI
Template Known Secondary structure  SSTTGGGG
SSTT
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   147..150.........160.........170.........180.........190.........200. ..
 
   1272.......1280.........1290.........1300.........1310.. .......
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Query Sequence  DSFQDAVKCLSEFACNAAFPDTSMEAIRLIRFCGKYVSERP. . . . . . . . . . . . RVLQEYT
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Template Sequence  VAFENAFERLLDIISEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWF
Template Known Secondary structure  TTTTGGGS
TT
TT
GGGGSGGG
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   204.....210.........220.........230.........240.........250.........260...
 
   1320.........1330........ .1340....... ..1350...
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Query Sequence  SDDMNVAPGDRVWVRGWFP. . . . . . . . . . . . . . . . . . . . . . . . ILFELSCII. . NRCKLD
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Template Sequence  EVGWSAQKVTNLHLMLQLVRVLVSPTNPPGATSSCQKAMFQCGLLQQLCTILMATGVPAD
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T
TTS
TT
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   264.....270.........280.........290.........300.........310.........320...
 
   1354.....1360.........
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Query Sequence  VRTRGLTVMFEIMKSY
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Template Sequence  ILTETINTVSEVIRGC
Template Known Secondary structure  TT
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   329330.........340....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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