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Job DescriptionA2A5R2
Confidence47.27%DateWed Jul 10 14:14:35 BST 2013
Rank63Aligned Residues483
% Identity13%Templatec4fgvA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:chromosome region maintenance 1 (crm1) or exportin 1 PDBTitle: crystal structure of free crm1 (crystal form 1)
Resolution2.94 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1091........1100.........1110.........1120.........1130.........1140.........1150
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Query Sequence  GNAIVDFVRWLCAVSMDELASPHHPRMFSLQKIVEISYYNMNRIRLQWSRIWHVIGDHFN
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Template Sequence  KRFLVTVIKDLLGLTEMKRGKDNKAVVASNIMYIVGQYP. . . RFLKAHWKFLKTVVNKLF
Template Known Secondary structure  S
S
...T
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   511........520.........530.........540......... 550.........560.......
 
   1151........1160.........1170...... ...1180.......
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Query Sequence  KVGCNPNEDVAIFAVDSLRQLSMKFL. . . . . . . . . . . . . . . . . . . . . . . EKGELANFRFQ
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Template Conservation    
      
   
   
  
                      

         
     
Template Sequence  EFMHESHEGVQDMACDTFIKIAKQCRRHFVALQPSENEPFIEEIIRNIGKITCDLTPQQV
Template Known Secondary structure  TTSS
TTS

TT
SS
TTTT

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   568.570.........580.........590.........600.........610.........620.......
 
   1188.1190.........1200.........1210.........1220.........1230.........1240.......
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Query Sequence  KDFLRPFEHIMKKNRSPTIRDMVIRCIAQMVSSQAANIRSGWKNIFAVFHQAASDHDGNI
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Template Sequence  HTFYEACGYMVSAQGNRNQQERLLAELMAIPNAA. . . . . . . WDEIIKAATMNPGILHEPD
Template Known Secondary structure  T


T.......
GGGGGS
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   628.630.........640.........650.........660. ........670.........680
 
   1248.1250.........1260.. .......1270.........1280.........1290......
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Query Sequence  VELAFQTTGHIVSTI. . . . . . . . . . . FQHHFPAAIDSFQDAVKCLSEFACNAAFPDTSME
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Template Conservation      
  

                    
      
       
               
Template Sequence  TIKIIGNIMKTNVSACSSIGPYFFPQIGRLYNDMLQMYAATSQLISEAVARDGEIATKMP
Template Known Secondary structure  GGGG
GGGGGS
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   681........690.........700.........710.........720.........730.........740
 
   1297..1300.........1310.........1320.........1330.........1340.........1350......
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Query Sequence  AIRLIRFCGKYVSERPRVLQEYTSDDMNVAPGDRVWVRGWFPILFELSCIINRCKLDVRT
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Template Sequence  KVRGLRTIKKEILKLVETFVE. . KAEDLQAVRSQMIPGLLDSVLVDYNRNVPGARDAEVL
Template Known Secondary structure  ..
S
TS
GGG

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   741........750.........760. ........770.........780.........790........
 
   1357..1360.........1370.........1380.........1390.........1400.........1410......
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Query Sequence  RGLTVMFEIMKSYGHTFAKHWWQDLFRIVFRIFDNMKLPEQQSEKSEWMTTTCNHALYAI
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Template Conservation   
   
           
  

  
    
  
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Template Sequence  KAMTVIITRLQGLMEDQVPAIMENVFECTLDMIN. . . . . KDFAEYPEHR. VEFFNLLRAI
Template Known Secondary structure  GGGGTTT.....
SSS
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   799800.........810.........820.........830.. .......840.. .......850..
 
   1417..1420.........1430.........1440.........1450.........1460.........1470.
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Query Sequence  CDVFTQFYEALHEVLLSDVFAQLQWCVKQDNEQLARSGTNCLENLVISNGEKFSP. . . . .
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Template Conservation            
       

  
          
    
  
  
               
Template Sequence  NLYCFPALLKLDNRQFKFVIDSCMWASKHDNRDVETAGLNMCLELINNIAEKTDVQTCNA
Template Known Secondary structure 
TS
T
SSS
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   853......860.........870.........880.........890.........900.........910..
 
   1472.......1480.........1490 .........1500.........1510.......
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Query Sequence  . . . AVWDETCNCMLDIFKTTIP. . . . . . . . . . . HVLLTWRPAGMEEEVSDRHLDVDLDRQ
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Template Conservation 
       

  
   
 
  
          
  
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Template Sequence  FFNQFFIRILQDVFFVLTDTDHKAGFKTQSMLLMRLFYFVHPADGSAPKIQGPIYQPD. .
Template Known Secondary structure  SSS
GGGS
S
TTTT

S
S

S
T..
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   913......920.........930.........940.........950.........960.........970
 
   1518.1520.........1530.........1540.........1550.........1560.........1570.......
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Query Sequence  SLSSIDRNASERGQSQLSNPTDDSWKGAPYAHQKLLASLLIKCVVQLELIQTIDNIVFYP
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Template Conservation  .....................................                   
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QAQPGTGNREFLANFVGTLL. . .
Template Known Secondary structure  .....................................TT

S

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   971........980.........990
 
   1578.1580.........1590.........1600.........1610.........1620.........1630.......
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Query Sequence  ATSKKEDAEHMVAAQQDTLDAEIHIETENQGMYKFMSSQHLFKLLDCLQESHSFSKAFNS
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Template Conservation  .............................   
  
       
   
         
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . QNAFANLTPLQITTFVKDCFELNTQYDKF. .
Template Known Secondary structure  .............................
TT

SSS
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   991........1000.........1010.........
 
   1638.1640.........1650.........1660....
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Query Sequence  NYEQRTVLWRAGFKGKSKPNLLKQETS
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Template Conservation       



                  
Template Sequence  RVVLRDFLISLREFAGDNAELYQVEKE
Template Known Secondary structure  STGGGGS


TT
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   1020.........1030.........1040......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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