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Job DescriptionA2A5R2
Confidence89.32%DateWed Jul 10 14:14:35 BST 2013
Rank30Aligned Residues306
% Identity13%Templatec2jdqB_
PDB info PDB header:protein transportChain: B: PDB Molecule:importin alpha-1 subunit; PDBTitle: c-terminal domain of influenza a virus polymerase pb22 subunit in complex with human importin alpha5
Resolution2.2 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   11491150.........1160.........1170.........1180.........1190.........1200........
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Query Sequence  FNKVGCNPNEDVAIFAVDSLRQLSMKFLEKGELANFRFQKDFLRPFEHIMKKNRSPTIRD
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Template Sequence  MIEMIFSKSPEQQLSATQKFRKLL. SKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQF
Template Known Secondary structure  SSS
T.TSSS


TSTT
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   87..90.........100.........110 .........120.........130.........140.....
 
   12091210.........1220....... ..1230.........1240.........1250.........1260.......
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Query Sequence  MVIRCIAQMVSSQAANIRS. GWKNIFAVFHQAASDHDGNIVELAFQTTGHIVSTIFQHHF
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Template Sequence  ESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR.
Template Known Secondary structure  SS
TTTT
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   146...150.........160.........170.........180.........190.........200....
 
   1268.1270.........1280.........1290.........1300.........1310.........1320.......
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Query Sequence  PAAIDSFQDAVKCLSEFACNAAFPDTSMEAIRLIRFCGKYVSERPRVLQEYTSDDMNVAP
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Template Sequence  . . DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPE. . . . . . . . . . . . . .
Template Known Secondary structure  ..TT
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   205....210.........220.........230.........240........
 
   1328.1330.........1340.........1350.........1360.........1370.........1380... ...
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Query Sequence  GDRVWVRGWFPILFELSCIINRCKLDVRTRGLTVMFEIMKSYGHTFAKHWWQDLFR. IVF
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Template Sequence  . . . . . FAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG. . . . . PNDKIQAVIDAGVC
Template Known Secondary structure  .....GGGTT


TSS.....
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   249250.........260.........270.........280.... .....290........
 
   1387..1390.........1400.........1410.........1420.........1430.........1440......
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Query Sequence  RIFDNMKLPEQQSEKSEWMTTTCNHALYAICDVFTQFYEALHEVLLSDVFAQLQWCVKQD
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Template Sequence  RRLVELLMHNDY. . . . . . . . KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP
Template Known Secondary structure  GGG
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   299300.........310 .........320.........330.........340.........350
 
   1447..1450.........1460.........1470.........1480.........1490
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Query Sequence  NEQLARSGTNCLENLVISNGEKFSPAVWDETCNCMLDIFKTTIP
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Template Conservation             
  
                   
   
     
Template Sequence  KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEF
Template Known Secondary structure  STTS
TT
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   351........360.........370.........380.........390....
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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