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Job DescriptionA2A5R2
Confidence83.89%DateWed Jul 10 14:14:35 BST 2013
Rank35Aligned Residues313
% Identity9%Templatec2ynsA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:importin subunit alpha-1a; PDBTitle: rimp_alpha_b54nls
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   1147..1150.........1160.........1170.........1180.........1190.........1200......
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Query Sequence  DHFNKVGCNPNEDVAIFAVDSLRQLSMKFLEKGELANFRFQKDFLRPFEHIMKKNRSPTI
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Template Sequence  PAMIGGVYSDDNNLQLEATTQFRKLLSI. . ERSPPIEEVIQSGVVPRFVQFLTREDFPQL
Template Known Secondary structure  TSS
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TT
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   75....80.........90.........100.. .......110.........120.........130..
 
   1207..1210.........1220....... ..1230.........1240.........1250.........1260.....
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Query Sequence  RDMVIRCIAQMVSSQAANIRS. GWKNIFAVFHQAASDHDGNIVELAFQTTGHIVSTIFQH
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Template Sequence  QFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKC
Template Known Secondary structure  TTS
TTGGG
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   133......140.........150.........160.........170.........180.........190..
 
   1266...1270.........1280.........1290.........1300..... ....1310.......
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Query Sequence  HFPAAIDSFQDAVKCLSEFACNAAFPDTSMEAIRLIRFCG. . . . . . . . KYVSERPRVLQE
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Template Sequence  R. . . DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALAR
Template Known Secondary structure  ...TT
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   193 ......200.........210.........220.........230.........240.........
 
   1318.1320.... .....1330.........1340.........1350.........1360...
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Query Sequence  YTSDDMN. . . . . . . . . . . . . . VAPGDRVWVRGWFPILFELSCIINRCKLDVRTRGLTVMF
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Template Sequence  LIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG
Template Known Secondary structure  TT


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   250.........260.........270.........280.........290.........300.........
 
   1364.....1370.........1380.........1390.........1400.........1410.........1420...
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Query Sequence  EIMKSYGHTFAKHWWQDLFRIVFRIFDNMKLPEQQSEKSEWMTTTCNHALYAICDVFTQF
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Template Sequence  NIVTGDDAQTQCIIDHQALPCLLSLLTQN. . . . . . . . . . . LKKSIKKEACWTISNITAGN
Template Known Secondary structure  TTS
TTTS
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   310.........320.........330........ .340.........350........
 
   1424.....1430.........1440.........1450.........1460.........1470.....
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Query Sequence  YEALHEVLLSDVFAQLQWCVKQDNEQLARSGTNCLENLVISNGEKFSPAVWD
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Template Sequence  KDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVS
Template Known Secondary structure  TT
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   359360.........370.........380.........390.........400.........410
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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