Return to main results Retrieve Phyre Job Id

Job DescriptionA2A5R2
Confidence22.28%DateWed Jul 10 14:14:35 BST 2013
Rank96Aligned Residues175
% Identity18%Templatec2po4A_
PDB info PDB header:transferaseChain: A: PDB Molecule:virion rna polymerase; PDBTitle: x-ray crystal structure of polymerase domain of the2 bacteriophage n4 virion rna polymerase
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   795....800.........810.........820.........830.........840.........850....
Predicted Secondary structure 


































Query SS confidence 



























































Query Sequence  VKNKMTKEQYIKMNRGINDSKDLPEEYLSSIYDEIEGKKIAMKETKEHTIATKSTKQSVA
Query Conservation 

 


 
 

 
 



 
 


   
  

  
   

 
                  
Alig confidence 




















..













............










Template Conservation 





   



  


 
 ..

     




 
............
  
   
   
Template Sequence  AKNPLTITIYGSGARGIAGKL. . VSSVTDAIYERMSD. . . . . . . . . . . . VLKARAKDPNI
Template Known Secondary structure 


TT

..............
TTS
Template Predicted Secondary structure 







..............






Template SS confidence 



























































   669670.........680......... 690.........700... ......710....
 
   855... .860.........870......... 880.........890...
Predicted Secondary structure  .....................










Query SS confidence 



. . . . . . . . . . . . . . .




















. . . . . .













Query Sequence  SEKQ. . . . . . . . . . . . . . . RRLLYNVEMEQMAKTAKALME. . . . . . AVSHAKAPFTSATH
Query Conservation      ...............                  
  ......              
Alig confidence 



...............




















......













Template Conservation                           





  


     
  
  
    

    
 
Template Sequence  SAAMAMFGKQAASEAHAEELLARFLKDMETLTSTVPVKRKGVLELQSTGTGAKGKINPKT
Template Known Secondary structure 
TTS
SSTT
S



S


TTT
Template Predicted Secondary structure 























Template SS confidence 



























































   715....720.........730.........740.........750.........760.........770....
 
   894.....900.........910.........920...... ...930.........940.........950
Predicted Secondary structure 



...


Query SS confidence 
































. . .























Query Sequence  LDHVRPMFKLVWTPLLAAYSIGLQNCDDTEVAS. . . LCLEGIRCAVRIACIFGMQLERDA
Query Conservation        

   
  





  
  
 
     ...  
 
    
 

    
   


Alig confidence 
































...























Template Conservation   

   

 

        

 
 

  

 

  
   
 
 






  

  
   
Template Sequence  YTIKGEQLKALQENMLHFFVEPLRNGITQTVGESLVYSTEQLQKATQIQSVVLEDMFKQR
Template Known Secondary structure 



T
Template Predicted Secondary structure 

Template SS confidence 



























































   775....780.........790.........800.........810.........820.........830....
 
   951........960.........970.........980...
Predicted Secondary structure 











Query SS confidence 
































Query Sequence  YVQALARFSLLTASSSITEMKQKNIDTIKTLIT
Query Conservation   
  
 
 
 
           


 
   

 
Alig confidence 
































Template Conservation 
 



  
  

 


  



    
   
 
Template Sequence  VQEKLAEKAKDPTWKKGDFLTQKELNDIQASLN
Template Known Secondary structure  TT
TT

TTS

BTG
Template Predicted Secondary structure 












Template SS confidence 
































   835....840.........850.........860.......
 
Download:Text version FASTA version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions
Phyre2 is part of Genome3D