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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1vsy5_

Fold library idPDB HeaderMoleculeTitle
c1vsy5_PDB header: hydrolaseChain: 5: PDB Molecule: proteasome activator blm10;PDBTitle: proteasome activator complex


Added to library: Sat Aug 28 18:52:45 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LDIYTCNYYFGNTTEEKLQNPNYLNVHRVRARIGHFFHKLYVFLSTNFENNTNMFQILLHGLKVWFTDLG
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Known secondary structure (DSSP)







SS
SSSSTTTT

TT
STT
SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence QETVFNEDPNAFIDVDFLENVQSLSHVNEPFTRTNFAIRANSLHQSRVLLHSTNRKASKLENLLLVDIIQ
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Known secondary structure (DSSP) S

SSTTS

SS



TTSS



S


B


S
 .........150.........160.........170.........180.........190.........200.........210
Sequence LATSLYPDIYKPAQGTLVHCMKQLVGSYGVVINKIIPSLEKAIKDHDYMKIQVILNVLLIKKIHRKLMTD
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Known secondary structure (DSSP) TSS
TTBTTT
S
TTSGGG
 .........220.........230.........240.........250.........260.........270.........280
Sequence YKDIGRLIFLLIECCRVNELEIGMYADKILTDIVIGIKIPSSVCVISDQAFLPLAPPDGTINLQVEAVKL
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Known secondary structure (DSSP) T
S
SSSSTTTTS




S




GGGTGGG

S
SSTTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence AKKKKREYYLSLLVDLQDKLLDKLDNEKDMGWKIRMFILRFVTQIQSNLESKPDKRAVFSIISQISTKHP
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Known secondary structure (DSSP) TTSSTT

S
T

SS



GGGGG

 .........360.........370.........380.........390.........400.........410.........420
Sequence EIIHLVVKSLLSTCNKIISLSDYEYDITRAYKNEFNPSFVEILDTSTTSFPKTFTEEMNNFDNPKYFIDL
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Known secondary structure (DSSP) TTT
GGGGSSSS


TTS
STTTS

SS


B

S
 .........430.........440.........450.........460.........470.........480.........490
Sequence RAYVGWLCWGRLMYVMSPKALKLNLRENELEVLKTAGHLLTREFLRDVTMNLVQDNETRGVFSSGNVSFF
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Known secondary structure (DSSP)


SBTTB

S
TT






TT

TTTTT



 .........500.........510.........520.........530.........540.........550.........560
Sequence SLVILLISSGFCELNMSDLFELCESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAK
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Known secondary structure (DSSP) TTTT



GGGT

SS
SS

SS

TTT
 .........570.........580.........590.........600.........610.........620.........630
Sequence CLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEF
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Known secondary structure (DSSP) SS


TTS
GGG
T








SS





SSTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence RAPDVGKLFDELVFDHPYDQVRQAVAKLLTTLVQNQSNPSISDPTTLLEAERNDPDGLGLPLKSVPEKVD
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Known secondary structure (DSSP) SS




S

S
TS



BS
S
SSSS


SS


 .........710.........720.........730.........740.........750.........760.........770
Sequence AYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVK
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Known secondary structure (DSSP) TGGGGTTSS

STTTTTSSSGGGTTTTTTTT
TTSS
 .........780.........790.........800.........810.........820.........830.........840
Sequence HKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSNQTKLQLAFIQHFLSAELLQLTEEE
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Known secondary structure (DSSP)
STT

STSSS


SS
TTTTS
SSSTTTS
TT
 .........850.........860.........870.........880.........890.........900.........910
Sequence KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDI
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Known secondary structure (DSSP) TTTTTT
SS
S

STTSSTTTSS

 .........920.........930.........940.........950.........960.........970.........980
Sequence KIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGMTGNAAKNTISEFKKVRADTWKFDRASFN
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Known secondary structure (DSSP) TT
S

SS

TTTSSS
SSTTSTTGGG

 .........990.......
Sequence TEELEDLEGVLWRSYYA
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Known secondary structure (DSSP) SSTTGGGSS



TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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