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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c2po4A_

Fold library idPDB HeaderMoleculeTitle
c2po4A_PDB header: transferaseChain: A: PDB Molecule: virion rna polymerase;PDBTitle: x-ray crystal structure of polymerase domain of the2 bacteriophage n4 virion rna polymerase


Added to library: Tue Mar 16 14:39:11 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GIDAVYPSLVGTADSKAEGIKNYFKLSFTLPEEQKSRTVGSEAPLKDVAQALSSRARYELFTEKETANPA
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Known secondary structure (DSSP)
STTBSSBS
TTSSS
B


SS

BTTTT
S
T
T
SS

TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence FNGEVIKRYKELMEHGEGIADILRSRLAKFLNTKDVGKRFAQGTEANRWVGGKLLNIVEQDGDTFKYNEQ
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Known secondary structure (DSSP)

TSTTTTT

GGGSTT
GGGGGTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence LLQTAVLAGLQWRLTATSNTAIKDAKDVAAITGIDQALLPEGLVEQFDTGMTLTEAVSSLAQKIESYWGL
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Known secondary structure (DSSP) S



SS
GGGS
TTST
 .........220.........230.........240.........250.........260.........270.........280
Sequence SRNPNAPLGYTKGIPTAMAAEILAAFVESTDVVENIVDMSEIDPDNKKTIGLYTITELDSFDPINSFPTA
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Known secondary structure (DSSP)
TTSBTTS
STTT
TT







TT
GGGGSTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence IEEAVLVNPTEKMFFGDDIPPVANTQLRNPAVRNTPEQKAALKAEQATEFYVHTPMVQFYETLGKDRILE
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Known secondary structure (DSSP) BSS
SS

TT





STT



B

 .........360.........370.........380.........390.........400.........410.........420
Sequence LMGAGTLNKELLNDNHAKSLEGKNRSVEDSYNQLFSVIEQVRAQSEDISTVPIHYAYNMTRVGRMQMLGK
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Known secondary structure (DSSP) TTS


GGGS

SSGGG




TTS
SSS
 .........430.........440.........450.........460.........470.........480.........490
Sequence YNPQSAKLVREAILPTKATLDLSNQNNEDFSAFQLGLAQALDIKVHTMTREVMSDELTKLLEGNLKPAID
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Known secondary structure (DSSP) SSTTT
TTS



SSTTSTT

GGGS
TTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence MMVEFNTTGSLPENAVDVLNTALGDRKSFVALMALMEYSRYLVAEDKSAFVTPLYVEADGVTNGPINAMM
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Known secondary structure (DSSP) S


TTGGG
S
S
GGG

SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence LMTGGLFTPDWIRNIAKGGLFIGSPNKTMNEHRSTADNNDLYQASTNALMESLGKLRSNYASNMPIQSQI
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Known secondary structure (DSSP)

S


TTTS
TT

T



TTT
 .........640.........650.........660.........670.........680.........690.........700
Sequence DSLLSLMDLFLPDINLGENGALELKRGIAKNPLTITIYGSGARGIAGKLVSSVTDAIYERMSDVLKARAK
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Known secondary structure (DSSP)
S




S

TTS







TT

 .........710.........720.........730.........740.........750.........760.........770
Sequence DPNISAAMAMFGKQAASEAHAEELLARFLKDMETLTSTVPVKRKGVLELQSTGTGAKGKINPKTYTIKGE
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Known secondary structure (DSSP)
TTS
TTS
SSTT
S



S


TTT



 .........780.........790.........800.........810.........820.........830.........840
Sequence QLKALQENMLHFFVEPLRNGITQTVGESLVYSTEQLQKATQIQSVVLEDMFKQRVQEKLAEKAKDPTWKK
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Known secondary structure (DSSP) T
TT
TT

T
 .........850.........860.........870.........880.........890.........900.........910
Sequence GDFLTQKELNDIQASLNNLAPMIETGSQTFYIAGSENAEVANQVLATNLDDRMRVPMSIYAPAQAGVAGI
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Known secondary structure (DSSP) TS

BTGGG



SS

TTSTTT
S

TTS
S





TTT
 .........920.........930.........940.........950.........960.........970.........980
Sequence PFMTIGTGDGMMMQTLSTMKGAPKNTLKIFDGMNIGLNDITDASRKANEAVYTSWQGNPIKNVYESYAKF
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Known secondary structure (DSSP) TSTT


S

SSTTSTT

 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence MKNVDFSKLSPEALEAIGKSALEYDQRENATVDDIANAASLIERNLRNIALGVDIRHKVLDKVNLSIDQM
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Known secondary structure (DSSP)

GGGS
S
TT

B

S
 .........1060.........1070.........1080.........1090....
Sequence AAVGAPYQNNGKIDLSNMTPEQQADELNKLFREELEARKQKVAK
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Known secondary structure (DSSP) SS





SB

TT



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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