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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3s4wB_

Fold library idPDB HeaderMoleculeTitle
c3s4wB_PDB header: dna binding proteinChain: B: PDB Molecule: fanconi anemia group d2 protein homolog;PDBTitle: structure of the fanci-fancd2 complex


Added to library: Sat Jul 30 09:47:27 2011
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GSVFVKLLKASGLTLKTGENQNQLGVDQVIFQRKLFQALRKHPAYPKVIEEFVNGLESYTEDSESLRNCL
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Known secondary structure (DSSP)

TT


TTS

SS
TTSS
TTSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence LSCERFYSKSLIKLLLGIDILQPAIIKMLFEKVPQFLFESENRDGINMARLIINQLKWLDRIVDGKDLTA
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Known secondary structure (DSSP) SB
B




BSTTTS



TT


GGGTT
S

SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence QMMQLISVAPVNLQHDFITSLPEILGDSQHANVGKELGELLVQNTSLTVPILDVFSSLRLDPNFLSKIRQ
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Known secondary structure (DSSP) S
TTTTS
GGG
STTS


 .........220.........230.........240.........250.........260.........270.........280
Sequence LVMGKLSSVRLEDFPVIVKFLLHSVTDTTSLEVIAELRENLNVQNSDKDCIVLVFDVIKSAIRYEKTISE
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Known secondary structure (DSSP) STTSS
TTS
SSTT



 .........290.........300.........310.........320.........330.........340.........350
Sequence AWFKAIERIESAAEHKSLDVVMLLIIYSTSTQTKKGVEKLLRNKIQSDCIQEQLLDSAFSTHYLVLKDIC
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Known secondary structure (DSSP) GGGSTT

T
TTT
S
TTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence PSILLLAQTLFHSQDQRIILFGSLLYKYAFKFFDTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVL
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Known secondary structure (DSSP) TSSSSS


 .........430.........440.........450.........460.........470.........480.........490
Sequence NASAMRLNAAFVKGILDYLENMSPQQIRKIFCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKL
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Known secondary structure (DSSP)
TGGGGGGGG


SS


T
SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence IGIIGAVTMAGIMAESEQRTQVTSLLQLVHSCTEHSPWASSLYYDEFANLIQERKLAPKTLEWVGQTIFN
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Known secondary structure (DSSP) TT

SSSS


 .........570.........580.........590.........600.........610.........620.........630
Sequence DFQDAFVVDFCAAPEGDFPFPVKALYGLEEYSTQDGIVINLLPLFYQECAKSSLCLASHFRLLRLCVARQ
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Known secondary structure (DSSP)


SS
SS

SS




SSS
SSSS



TTS
 .........640.........650.........660.........670.........680.........690.........700
Sequence HDGNLDEIDGLLDCPLFLPDLEPGEKLESMSAKDRSLMCSLTFLTFNWFREVVNAFCQQTSPEMKGKVLS
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Known secondary structure (DSSP) TT

TTTGGGSS




S
SSSSTT

TTT


 .........710.........720.........730.........740.........750.........760.........770
Sequence RLKDLVELQGILEKYLAVIPDYVPPFASVDLDTLVSLQNYRAFFRELDIEVFSILHSGLVTLGPAELLFL
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Known secondary structure (DSSP) TTS
S



SS
STT




TTTS



GGGGGGGGS





 .........780.........790.........800.........810.........820.........830.........840
Sequence LEDLSQKLENMLTFSHLHQRSVQDIVHCVVQLLTPMCNHLENIHNFFQCLTAQEQHTMACCYQKLLQVLH
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Known secondary structure (DSSP)


TTTTS


 .........850.........860.........870.........880.........890.........900.........910
Sequence ALFAWKGFTHQSKHRLLHSALEVLSNRLKQMEQDQPLEELVSQSFSYLQNFHHSVPSFQCGLYLLRLLMA
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Known secondary structure (DSSP) T
TTTTSSTTTT
TTS

S
SS

GGGGG

S
 .........920.........930.........940.........950.........960.........970.........980
Sequence LLEKSQKKEKLASLAKQLLCRAWPKNPTFNDHLHDVLYIYLEHTDNVLKAIEEITGVGVPELVSAPSSTF
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Known secondary structure (DSSP) TT

TTS




SS
TTTS



SS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence PTLTRHTFVIFFRVMMAELEKTVKGLAADSQQVHEEKLLYWNMAVRDFSILLNLMKVFDSYPVLHVCLKY
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Known secondary structure (DSSP)


STT


TTT

S
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence GRRFVEAFLKQCMPLLDFSFRKHREDVLSLLQTLQLNTRLLHHLCGHSKIRQDTRLTKHVPLLKKSLELL
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Known secondary structure (DSSP) TTTT
S
SGGGSSGGGGTT
 .........1130.........1140......
Sequence VCRVKAMLVLNNCREAFWLGTLKNRD
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Known secondary structure (DSSP)
SS

TS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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