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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c1o1nA_

Fold library idPDB HeaderMoleculeTitle
c1o1nA_PDB header: oxygen storage/transportChain: A: PDB Molecule: hemoglobin alpha chain;PDBTitle: deoxy hemoglobin (a-glyglygly-c:v1m,l29w; b,d:v1m)


Added to library: Tue Mar 16 13:32:54 2010
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MLSPADKTNVKAAWGKVGAHAGEYGAEAWERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAV
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Known secondary structure (DSSP)


GGG
GGGGGG
TTS

STT
 .........80.........90.........100.........110.........120.........130.........140
Sequence AHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSKY
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Known secondary structure (DSSP) TGGGTTT


T
TTT

TTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence RVLSPADKTNVKAAWGKVGAHAGEYGAEAWERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNA
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Known secondary structure (DSSP)



GGG
GGGGGG
TTS

STT
 .........220.........230.........240.........250.........260.........270.........280
Sequence VAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFLASVSTVLTSK
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Known secondary structure (DSSP) TTTSTTT


T
TTT

TTT
 ..
Sequence YR
Predicted secondary structure

SS confidence

Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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