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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c3trkA_

Fold library idPDB HeaderMoleculeTitle
c3trkA_PDB header: hydrolaseChain: A: PDB Molecule: nonstructural polyprotein;PDBTitle: structure of the chikungunya virus nsp2 protease


Added to library: Sat Oct 1 10:08:37 2011
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NAFQNKANVCWAKSLVPILETAGIKLNDRQWSQIIQAFKEDKAYSPEVALNEICTRXYGVDLDSGLFSKP
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Known secondary structure (DSSP)


TT
SS
TT




TT



SS
GGG
TTBS
 .........80.........90.........100.........110.........120.........130.........140
Sequence LVSVYYADNHWDNRPGGKXFGFNPEAASILERKYPFTKGKWNINKQICVTTRRIEDFNPTTNIIPVNRRL
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Known secondary structure (DSSP)

SS


SSSB


GGGTT
TTSS
TTTTS

TTS

S
SS


 .........150.........160.........170.........180.........190.........200.........210
Sequence PHSLVAEHRPVKGERXEWLVNKINGHHVLLVSGYNLALPTKRVTWVAPLGVRGADYTYNLELGLPATLGR
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Known secondary structure (DSSP) SS


SS

B




TTTS

SSS



TTSTT
SS
S
GGG


GGG

 .........220.........230.........240.........250.........260.........270.........280
Sequence YDLVVINIHTPFRIHHYQQCVDHAXKLQXLGGDSLRLLKPGGSLLIRAYGYADRTSERVICVLGRKFRSS
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Known secondary structure (DSSP)





SSGGGG



STT
 .........290.........300.........310.........320.
Sequence RALKPPCVTSNTEXFFLFSNFDNGRRNFTTHVXNNQLNAAF
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Known secondary structure (DSSP)

TT

BTT








S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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