Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP0C093
DateThu Jan 5 11:29:51 GMT 2012
Unique Job ID581ae91541906f38

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c3qbmA_
Top template information
PDB header:transcription regulator
Chain: A: PDB Molecule:tetr transcriptional regulator;
PDBTitle: crystal structure of a tetr transcriptional regulator (caur_2221) from2 chloroflexus aurantiacus j-10-fl at 1.80 a resolution
Confidence and coverage
Confidence: 99.9% Coverage: 97%
192 residues ( 97% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MAEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFD
Secondary structure 



















SS confidence 



























































Disorder  ????????



















































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   .........70.........80.........90.........100.........110.........120
Sequence  SLIEFIEDSLITRINLILKDEKDTTARLRLIVLLLLGFGERNPGLTRILTGHALMFEQDR
Secondary structure 








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Disorder 

















??
??





























?????

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   .........130.........140.........150.........160.........170.........180
Sequence  LQGRINQLFERIEAQLRQVLREKRMREGEGYTTDETLLASQILAFCEGMLSRFVRSEFKY
Secondary structure 













SS confidence 



























































Disorder 
























?????


























??
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   .........190........
Sequence  RPTDDFDARWPLIAAQLQ
Secondary structure 


SS confidence 

















Disorder 














???
Disorder confidence 

















 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 3qbm chain A

3D model

Region: 6 - 198
Aligned: 192
Modelled: 193
Confidence: 99.9%
Identity: 18%
PDB header:transcription regulator
Chain: A: PDB Molecule:tetr transcriptional regulator;
PDBTitle: crystal structure of a tetr transcriptional regulator (caur_2221) from2 chloroflexus aurantiacus j-10-fl at 1.80 a resolution

Phyre2

PDB 1vi0 chain B

3D model

Region: 11 - 198
Aligned: 186
Modelled: 185
Confidence: 99.9%
Identity: 17%
PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a transcriptional regulator

Phyre2

PDB 2pbx chain B

3D model

Region: 1 - 193
Aligned: 191
Modelled: 193
Confidence: 99.9%
Identity: 13%
PDB header:transcription
Chain: B: PDB Molecule:hemagglutinin/protease regulatory protein;
PDBTitle: vibrio cholerae hapr

Phyre2

PDB 2gen chain A

3D model

Region: 11 - 198
Aligned: 186
Modelled: 188
Confidence: 99.9%
Identity: 18%
PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: structural genomics, the crystal structure of a probable2 transcriptional regulator from pseudomonas aeruginosa pao1

Phyre2

PDB 2hyj chain A

3D model

Region: 7 - 196
Aligned: 189
Modelled: 190
Confidence: 99.9%
Identity: 17%
PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: the crystal structure of a tetr-family transcriptional regulator from2 streptomyces coelicolor

Phyre2

PDB 2f07 chain A

3D model

Region: 2 - 197
Aligned: 192
Modelled: 196
Confidence: 99.9%
Identity: 14%
PDB header:transcription
Chain: A: PDB Molecule:yvdt;
PDBTitle: crystal structure of yvdt from bacillus subtilis

Phyre2

PDB 2g7s chain A

3D model

Region: 7 - 193
Aligned: 186
Modelled: 187
Confidence: 99.9%
Identity: 17%
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the crystal structure of transcriptional regulator, tetr family, from2 agrobacterium tumefaciens

Phyre2

PDB 3him chain A

3D model

Region: 10 - 197
Aligned: 184
Modelled: 188
Confidence: 99.9%
Identity: 16%
PDB header:transcription regulator
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: the crystal structure of a bacterial regulatory protein in the tetr2 family from rhodococcus rha1 to 2.2a

Phyre2

PDB 3eup chain A

3D model

Region: 3 - 194
Aligned: 191
Modelled: 192
Confidence: 99.9%
Identity: 13%
PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the crystal structure of the transcriptional regulator, tetr family2 from cytophaga hutchinsonii

Phyre2

PDB 2nx4 chain A

3D model

Region: 3 - 195
Aligned: 190
Modelled: 193
Confidence: 99.9%
Identity: 18%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:transcriptional regulator, tetr family protein;
PDBTitle: the crystal structure of athe putative tetr-family transcriptional2 regulator rha06780 from rhodococcus sp. rha1.

Phyre2

PDB 3anp chain D

3D model

Region: 10 - 197
Aligned: 185
Modelled: 187
Confidence: 99.9%
Identity: 15%
PDB header:transcription
Chain: D: PDB Molecule:transcriptional repressor, tetr family;
PDBTitle: crystal structure of thermus thermophilus fadr, a tetr familly2 transcriptional repressor, in complex with lauroyl-coa.

Phyre2

PDB 3lwj chain A

3D model

Region: 7 - 194
Aligned: 183
Modelled: 188
Confidence: 99.9%
Identity: 18%
PDB header:transcription regulator
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of putative tetr-family transcriptional regulator2 (yp_752756.1) from syntrophomonas wolfei str. goettingen at 2.07 a3 resolution

Phyre2

PDB 3dcf chain B

3D model

Region: 10 - 198
Aligned: 181
Modelled: 189
Confidence: 99.9%
Identity: 15%
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator of the tetr/acrr
PDBTitle: crystal structure of transcriptional regulator of the2 tetr/acrr family (yp_290855.1) from thermobifida fusca yx-3 er1 at 2.50 a resolution

Phyre2

PDB 3e7q chain B

3D model

Region: 1 - 195
Aligned: 193
Modelled: 195
Confidence: 99.9%
Identity: 16%
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: the crystal structure of the putative transcriptional regulator from2 pseudomonas aeruginosa pao1

Phyre2

PDB 1rkt chain A

3D model

Region: 2 - 198
Aligned: 195
Modelled: 197
Confidence: 99.9%
Identity: 13%
PDB header:transcription
Chain: A: PDB Molecule:protein yfir;
PDBTitle: crystal structure of yfir, a putative transcriptional regulator from2 bacillus subtilis

Phyre2

PDB 3nxc chain A

3D model

Region: 10 - 198
Aligned: 176
Modelled: 189
Confidence: 99.9%
Identity: 93%
PDB header:dna binding protein
Chain: A: PDB Molecule:hth-type protein slma;
PDBTitle: molecular mechanism by which the escherichia coli nucleoid occlusion2 factor, slma, keeps cytokinesis in check

Phyre2

PDB 3on2 chain C

3D model

Region: 3 - 198
Aligned: 191
Modelled: 196
Confidence: 99.9%
Identity: 17%
PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:probable transcriptional regulator;
PDBTitle: structure of a protein with unknown function from rhodococcus sp. rha1

Phyre2

PDB 3pas chain A

3D model

Region: 5 - 197
Aligned: 187
Modelled: 193
Confidence: 99.9%
Identity: 16%
PDB header:transcription regulator
Chain: A: PDB Molecule:tetr family transcription regulator;
PDBTitle: crystal structure of a tetr family transcription regulator (maqu_1417)2 from marinobacter aquaeolei vt8 at 1.90 a resolution

Phyre2

PDB 3ppb chain B

3D model

Region: 9 - 197
Aligned: 185
Modelled: 188
Confidence: 99.9%
Identity: 18%
PDB header:transcription regulator
Chain: B: PDB Molecule:putative tetr family transcription regulator;
PDBTitle: crystal structure of a putative tetr family transcription regulator2 (shew_3104) from shewanella sp. pv-4 at 2.10 a resolution

Phyre2

PDB 3bcg chain A

3D model

Region: 5 - 197
Aligned: 192
Modelled: 193
Confidence: 99.9%
Identity: 17%
PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional regulator acrr;
PDBTitle: conformational changes of the acrr regulator reveal a2 mechanism of induction

Phyre2
1

c3qbmA_
2

c1vi0B_
3

c2pbxB_
4

c2genA_
5

c2hyjA_
6

c2f07A_
7

c2g7sA_
8

c3himA_
9

c3eupA_
10

c2nx4A_
11

c3anpD_
12

c3lwjA_
13

c3dcfB_
14

c3e7qB_
15

c1rktA_
16

c3nxcA_
17

c3on2C_
18

c3pasA_
19

c3ppbB_
20

c3bcgA_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c3qbmA_



99.9 18 PDB header:transcription regulator
Chain: A: PDB Molecule:tetr transcriptional regulator;
PDBTitle: crystal structure of a tetr transcriptional regulator (caur_2221) from2 chloroflexus aurantiacus j-10-fl at 1.80 a resolution
2c1vi0B_



99.9 17 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a transcriptional regulator
3c2pbxB_



99.9 13 PDB header:transcription
Chain: B: PDB Molecule:hemagglutinin/protease regulatory protein;
PDBTitle: vibrio cholerae hapr
4c2genA_



99.9 18 PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: structural genomics, the crystal structure of a probable2 transcriptional regulator from pseudomonas aeruginosa pao1
5c2hyjA_



99.9 17 PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: the crystal structure of a tetr-family transcriptional regulator from2 streptomyces coelicolor
6c2f07A_



99.9 14 PDB header:transcription
Chain: A: PDB Molecule:yvdt;
PDBTitle: crystal structure of yvdt from bacillus subtilis
7c2g7sA_



99.9 17 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the crystal structure of transcriptional regulator, tetr family, from2 agrobacterium tumefaciens
8c3himA_



99.9 16 PDB header:transcription regulator
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: the crystal structure of a bacterial regulatory protein in the tetr2 family from rhodococcus rha1 to 2.2a
9c3eupA_



99.9 13 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the crystal structure of the transcriptional regulator, tetr family2 from cytophaga hutchinsonii
10c2nx4A_



99.9 18 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:transcriptional regulator, tetr family protein;
PDBTitle: the crystal structure of athe putative tetr-family transcriptional2 regulator rha06780 from rhodococcus sp. rha1.
11c3anpD_



99.9 15 PDB header:transcription
Chain: D: PDB Molecule:transcriptional repressor, tetr family;
PDBTitle: crystal structure of thermus thermophilus fadr, a tetr familly2 transcriptional repressor, in complex with lauroyl-coa.
12c3lwjA_



99.9 18 PDB header:transcription regulator
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of putative tetr-family transcriptional regulator2 (yp_752756.1) from syntrophomonas wolfei str. goettingen at 2.07 a3 resolution
13c3dcfB_



99.9 15 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator of the tetr/acrr
PDBTitle: crystal structure of transcriptional regulator of the2 tetr/acrr family (yp_290855.1) from thermobifida fusca yx-3 er1 at 2.50 a resolution
14c3e7qB_



99.9 16 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: the crystal structure of the putative transcriptional regulator from2 pseudomonas aeruginosa pao1
15c1rktA_



99.9 13 PDB header:transcription
Chain: A: PDB Molecule:protein yfir;
PDBTitle: crystal structure of yfir, a putative transcriptional regulator from2 bacillus subtilis
16c3nxcA_



99.9 93 PDB header:dna binding protein
Chain: A: PDB Molecule:hth-type protein slma;
PDBTitle: molecular mechanism by which the escherichia coli nucleoid occlusion2 factor, slma, keeps cytokinesis in check
17c3on2C_



99.9 17 PDB header:structural genomics, unknown function
Chain: C: PDB Molecule:probable transcriptional regulator;
PDBTitle: structure of a protein with unknown function from rhodococcus sp. rha1
18c3pasA_



99.9 16 PDB header:transcription regulator
Chain: A: PDB Molecule:tetr family transcription regulator;
PDBTitle: crystal structure of a tetr family transcription regulator (maqu_1417)2 from marinobacter aquaeolei vt8 at 1.90 a resolution
19c3ppbB_



99.9 18 PDB header:transcription regulator
Chain: B: PDB Molecule:putative tetr family transcription regulator;
PDBTitle: crystal structure of a putative tetr family transcription regulator2 (shew_3104) from shewanella sp. pv-4 at 2.10 a resolution
20c3bcgA_



99.9 17 PDB header:transcription regulator
Chain: A: PDB Molecule:hth-type transcriptional regulator acrr;
PDBTitle: conformational changes of the acrr regulator reveal a2 mechanism of induction
21c2uxoB_



not modelled 99.9 16 PDB header:transcription
Chain: B: PDB Molecule:hth-type transcriptional regulator ttgr;
PDBTitle: ttgr in complex with tetracycline
22c2g3bB_



not modelled 99.9 15 PDB header:transcription
Chain: B: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of putative tetr-family transcriptional regulator2 from rhodococcus sp.
23c2iaiA_



not modelled 99.9 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative transcriptional regulator sco3833;
PDBTitle: crystal structure of sco3833, a member of the tetr transcriptional2 regulator family from streptomyces coelicolor a3
24c2ibdB_



not modelled 99.9 18 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:possible transcriptional regulator;
PDBTitle: crystal structure of probable transcriptional regulatory protein2 rha5900
25c1u9nA_



not modelled 99.9 17 PDB header:dna binding protein
Chain: A: PDB Molecule:transcriptional repressor ethr;
PDBTitle: crystal structure of the transcriptional regulator ethr in2 a ligand bound conformation opens therapeutic perspectives3 against tuberculosis and leprosy
26c3s5rA_



not modelled 99.9 20 PDB header:dna binding protein
Chain: A: PDB Molecule:transcriptional regulator tetr family;
PDBTitle: crystal structure of a putative transcriptional regulator of the tetr2 family (syn_02108) from syntrophus aciditrophicus at 2.60 a3 resolution
27c3bruA_



not modelled 99.9 16 PDB header:transcription
Chain: A: PDB Molecule:regulatory protein, tetr family;
PDBTitle: crystal structure of regulatory protein tetr from rhodobacter2 sphaeroides
28c2hkuB_



not modelled 99.9 13 PDB header:transcription regulator
Chain: B: PDB Molecule:a putative transcriptional regulator;
PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional regulator from rhodococcus sp. rha1
29c3ccyA_



not modelled 99.9 16 PDB header:transcription regulator
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of a tetr-family transcriptional regulator from2 bordetella parapertussis 12822
30c1zkgB_



not modelled 99.9 17 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of transcriptional regulator, tetr family (tm1030)2 from thermotoga maritima at 2.30 a resolution
31c2gfnA_



not modelled 99.9 18 PDB header:transcription
Chain: A: PDB Molecule:hth-type transcriptional regulator pksa related protein;
PDBTitle: crystal structure of hth-type transcriptional regulator pksa related2 protein from rhodococcus sp. rha1
32c1jumB_



not modelled 99.9 16 PDB header:transcription
Chain: B: PDB Molecule:hypothetical transcriptional regulator in qaca
PDBTitle: crystal structure of the multidrug binding transcriptional2 repressor qacr bound to the natural drug berberine
33c3nrgA_



not modelled 99.9 13 PDB header:transcription
Chain: A: PDB Molecule:tetr family transcriptional regulator;
PDBTitle: crystal structure of a tetr family transcriptional regulator2 (caur_2714) from chloroflexus aurantiacus j-10-fl at 2.56 a3 resolution
34c2rasB_



not modelled 99.9 12 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a putative tetr/acrr family transcriptional2 regulator (saro_0558) from novosphingobium aromaticivorans dsm at3 1.80 a resolution
35c3f1bA_



not modelled 99.9 18 PDB header:transcription regulator
Chain: A: PDB Molecule:tetr-like transcriptional regulator;
PDBTitle: the crystal structure of a tetr-like transcriptional regulator from2 rhodococcus sp. rha1.
36c3he0A_



not modelled 99.9 16 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the structure of a putative transcriptional regulator tetr family2 protein from vibrio parahaemolyticus.
37c1pb6D_



not modelled 99.9 15 PDB header:transcription
Chain: D: PDB Molecule:hypothetical transcriptional regulator ycdc;
PDBTitle: crystal structure of hypothetical transcriptional regulator ycdc
38c3knwB_



not modelled 99.9 15 PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator (tetr/acrr family);
PDBTitle: crystal structure of a putative transcriptional regulator (tetr/acrr2 family member) from putative transcriptional regulator (tetr/acrr3 family)
39c3gziA_



not modelled 99.9 10 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a transcriptional regulator of the tetr family2 (shew_3567) from shewanella loihica pv-4 at 2.05 a resolution
40c2hytA_



not modelled 99.9 17 PDB header:transcription
Chain: A: PDB Molecule:tetr-family transcriptional regulator;
PDBTitle: crystal structure of a tetr-family transcriptional regulator (eca1819)2 from pectobacterium atrosepticum at 1.64 a resolution
41c3dewA_



not modelled 99.9 12 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the structure of a putative tetr family transcriptional regulator from2 geobacter sulfurreducens pca.
42c3bhqB_



not modelled 99.9 15 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a putative tetr-family transcriptional regulator2 (mlr_4833) from mesorhizobium loti maff303099 at 1.54 a resolution
43c3lsjA_



not modelled 99.9 14 PDB header:transcription
Chain: A: PDB Molecule:dest;
PDBTitle: crystal structure of dest in complex with palmitoyl-coa
44c2wuiA_



not modelled 99.9 16 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of mexz, a key repressor responsible for2 antibiotic resistance in pseudomonas aeruginosa.
45c3f0cA_



not modelled 99.9 17 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of transcriptional regulator from cytophaga2 hutchinsonii atcc 33406
46c3g7rB_



not modelled 99.9 11 PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of sco4454, a tetr-family transcriptional2 regulator from streptomyces coelicolor
47c2qibA_



not modelled 99.9 15 PDB header:transcription
Chain: A: PDB Molecule:tetr-family transcriptional regulator;
PDBTitle: crystal structure of tetr-family transcriptional regulator from2 streptomyces coelicolor
48c3qkxB_



not modelled 99.9 14 PDB header:transcription regulator
Chain: B: PDB Molecule:uncharacterized hth-type transcriptional regulator hi_0893;
PDBTitle: crystal structure of a tetr-family transcriptional regulator (hi0893)2 from haemophilus influenzae rd at 2.35 a resolution
49c2qtqB_



not modelled 99.9 12 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a predicted dna-binding transcriptional regulator2 (saro_1072) from novosphingobium aromaticivorans dsm at 1.85 a3 resolution
50c2zb9A_



not modelled 99.9 17 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of tetr family transcription regulator2 sco0332
51c2of7A_



not modelled 99.9 13 PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: structural genomics, the crystal structure of a tetr-family2 transcriptional regulator from streptomyces coelicolor a3
52c3dpjB_



not modelled 99.9 19 PDB header:dna binding protein
Chain: B: PDB Molecule:transcription regulator, tetr family;
PDBTitle: the crystal structure of a tetr transcription regulator2 from silicibacter pomeroyi dss
53c2raeA_



not modelled 99.9 12 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, acrr family protein;
PDBTitle: crystal structure of a tetr/acrr family transcriptional regulator from2 rhodococcus sp. rha1
54c2dg8D_



not modelled 99.9 18 PDB header:gene regulation
Chain: D: PDB Molecule:putative tetr-family transcriptional regulatory protein;
PDBTitle: crystal structure of the putative trasncriptional regulator sco75182 from streptomyces coelicolor a3(2)
55c2id3A_



not modelled 99.9 15 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of transcriptional regulator sco5951 from2 streptomyces coelicolor a3(2)
56c3mvpA_



not modelled 99.9 17 PDB header:transcription regulator
Chain: A: PDB Molecule:tetr/acrr transcriptional regulator;
PDBTitle: the crystal structure of a tetr/acrr transcriptional regulator from2 streptococcus mutans to 1.85a
57c1ui6B_



not modelled 99.9 15 PDB header:antibiotic
Chain: B: PDB Molecule:a-factor receptor homolog;
PDBTitle: crystal structure of gamma-butyrolactone receptor (arpa-like protein)
58c3b81A_



not modelled 99.9 19 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, acrr family;
PDBTitle: crystal structure of predicted dna-binding transcriptional regulator2 of tetr/acrr family (np_350189.1) from clostridium acetobutylicum at3 2.10 a resolution
59c3rh2A_



not modelled 99.9 19 PDB header:dna binding protein
Chain: A: PDB Molecule:hypothetical tetr-like transcriptional regulator;
PDBTitle: crystal structure of a hypothetical tetr-like transcriptional2 regulator (sama_0099) from shewanella amazonensis sb2b at 2.42 a3 resolution
60c2np5A_



not modelled 99.9 21 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a transcriptional regulator (rha1_ro04179) from2 rhodococcus sp. rha1.
61c3c07B_



not modelled 99.9 16 PDB header:transcription regulator
Chain: B: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of a tetr family transcriptional regulator from2 streptomyces coelicolor a3(2)
62c2fq4A_



not modelled 99.9 15 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: the crystal structure of the transcriptional regulator (tetr family)2 from bacillus cereus
63c2fbqA_



not modelled 99.9 16 PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: the crystal structure of transcriptional regulator pa3006
64c3cjdB_



not modelled 99.9 15 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of putative tetr transcriptional regulator2 (yp_510936.1) from jannaschia sp. ccs1 at 1.79 a resolution
65c2i10A_



not modelled 99.9 14 PDB header:transcription
Chain: A: PDB Molecule:putative tetr transcriptional regulator;
PDBTitle: putative tetr transcriptional regulator from rhodococcus sp. rha1
66c3nnrA_



not modelled 99.9 17 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of a tetr-family transcriptional regulator2 (maqu_3571) from marinobacter aquaeolei vt8 at 2.49 a resolution
67c3npiB_



not modelled 99.8 17 PDB header:gene regulation
Chain: B: PDB Molecule:tetr family regulatory protein;
PDBTitle: crystal structure of a tetr family regulatory protein (dip1788) from2 corynebacterium diphtheriae at 2.96 a resolution
68c3jsjC_



not modelled 99.8 19 PDB header:transcription
Chain: C: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of a putative tetr-transcriptional regulator2 (sav143) from streptomyces avermitilis ma-4680 at 2.10 a resolution
69c3mnlA_



not modelled 99.8 21 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulatory protein (probably tetr-family);
PDBTitle: the crystal structure of kstr (rv3574) from mycobacterium tuberculosis2 h37rv
70c3kkcB_



not modelled 99.8 16 PDB header:transcription regulator
Chain: B: PDB Molecule:tetr family transcriptional regulator;
PDBTitle: the crystal structure of tetr transcriptional regulator from2 streptococcus agalactiae 2603v
71c1sgmA_



not modelled 99.8 17 PDB header:transcription
Chain: A: PDB Molecule:putative hth-type transcriptional regulator yxaf;
PDBTitle: crystal structure of hypothetical protein yxaf
72c3cwrA_



not modelled 99.8 17 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of transcriptional regulator of tetr2 family (yp_425770.1) from rhodospirillum rubrum atcc 111703 at 1.50 a resolution
73c3iuvA_



not modelled 99.8 12 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized tetr family protein;
PDBTitle: the structure of a member of tetr family (sco1917) from2 streptomyces coelicolor a3
74c2qwtA_



not modelled 99.8 17 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of the tetr transcription regulatory2 protein from mycobacterium vanbaalenii
75c1zk8A_



not modelled 99.8 16 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of transcriptional regulator from bacillus cereus2 atcc 14579
76c3on4D_



not modelled 99.8 19 PDB header:transcription
Chain: D: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of tetr transcriptional regulator from legionella2 pneumophila
77c3colB_



not modelled 99.8 15 PDB header:transcription regulator
Chain: B: PDB Molecule:putative transcription regulator;
PDBTitle: crystal structure of putative transcription regulator from2 lactobacillus plantarum
78c2oi8A_



not modelled 99.8 16 PDB header:transcription
Chain: A: PDB Molecule:putative regulatory protein sco4313;
PDBTitle: crystal structure of putative regulatory protein sco4313
79c3c2bA_



not modelled 99.8 13 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of tetr transcriptional regulator from agrobacterium2 tumefaciens
80c2dg7A_



not modelled 99.8 15 PDB header:gene regulation
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: crystal structure of the putative transcriptional regulator sco03372 from streptomyces coelicolor a3(2)
81c3aqsD_



not modelled 99.8 12 PDB header:transcription regulator
Chain: D: PDB Molecule:bacterial regulatory proteins, tetr family;
PDBTitle: crystal structure of rolr (ncgl1110) without ligand
82c2rekA_



not modelled 99.8 16 PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of tetr-family transcriptional regulator
83c3g56A_



not modelled 99.8 13 PDB header:dna binding protein
Chain: A: PDB Molecule:regulator of macrolide 2'-phosphotransferase i;
PDBTitle: structure of the macrolide biosensor protein, mphr(a)
84c2zcxA_



not modelled 99.8 16 PDB header:transcription
Chain: A: PDB Molecule:tetr-family transcriptional regulator;
PDBTitle: crystal structure of tetr family transcriptional regulator2 sco7815
85c2o7tA_



not modelled 99.8 15 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of a tetr family transcriptional regulator2 (ncgl1578, cgl1640) from corynebacterium glutamicum at 2.10 a3 resolution
86c3geuC_



not modelled 99.8 18 PDB header:cell adhesion
Chain: C: PDB Molecule:intercellular adhesion protein r;
PDBTitle: crystal structure of icar from staphylococcus aureus, a member of the2 tetracycline repressor protein family
87c2q24A_



not modelled 99.8 15 PDB header:transcription
Chain: A: PDB Molecule:putative tetr family transcriptional regulator;
PDBTitle: crystal structure of tetr transcriptional regulator sco0520 from2 streptomyces coelicolor
88c3bjbE_



not modelled 99.8 17 PDB header:transcription regulator
Chain: E: PDB Molecule:probable transcriptional regulator, tetr family protein;
PDBTitle: crystal structure of a tetr transcriptional regulator from rhodococcus2 sp. rha1
89c3crjC_



not modelled 99.8 18 PDB header:transcription regulator
Chain: C: PDB Molecule:transcription regulator;
PDBTitle: crystal structure of a tetr transcription regulator from haloarcula2 marismortui atcc 43049
90c2qcoA_



not modelled 99.8 12 PDB header:transcription
Chain: A: PDB Molecule:cmer;
PDBTitle: crystal structure of the transcriptional regulator cmer from2 campylobacter jejuni
91c2jk3A_



not modelled 99.8 14 PDB header:transcription
Chain: A: PDB Molecule:hemolysin ii regulatory protein;
PDBTitle: crystal structure of the hlyiir mutant protein with2 residues 169-186 substituted by gssgssg linker
92c1t33B_



not modelled 99.8 16 PDB header:transcription
Chain: B: PDB Molecule:putative transcriptional repressor (tetr/acrr family);
PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional repressor (tetr/acrr family) from salmonella3 typhimurim lt2
93c2eh3A_



not modelled 99.8 20 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of aq_1058, a transcriptional regulator (terr/acrr2 family) from aquifex aeolicus vf5
94c2iu5A_



not modelled 99.8 12 PDB header:transcription
Chain: A: PDB Molecule:hth-type dhaklm operon transcriptional activator dhas;
PDBTitle: dihydroxyacetone kinase operon activator dhas
95c3o60A_



not modelled 99.8 13 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:lin0861 protein;
PDBTitle: the crystal structure of lin0861 from listeria innocua to 2.8a
96c3cdlA_



not modelled 99.8 16 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator aefr;
PDBTitle: crystal structure of a tetr family transcriptional regulator from2 pseudomonas syringae pv. tomato str. dc3000
97c2yvhA_



not modelled 99.8 17 PDB header:transcription/dna
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of the operator-binding form of the multi-drug2 binding transcriptional repressor cgmr
98c2d6yA_



not modelled 99.8 14 PDB header:gene regulation
Chain: A: PDB Molecule:putative tetr family regulatory protein;
PDBTitle: crystal structure of transcriptional factor sco4008 from streptomyces2 coelicolor a3(2)
99c2zcmB_



not modelled 99.8 16 PDB header:transcription
Chain: B: PDB Molecule:biofilm operon icaabcd hth-type negative transcriptional
PDBTitle: crystal structure of icar, a repressor of the tetr family
100c2fd5A_



not modelled 99.8 18 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: the crystal structure of a transcriptional regulator from pseudomonas2 aeruginosa pao1
101c3kkdA_



not modelled 99.8 15 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator;
PDBTitle: structure of a putative tetr transcriptional regulator (pa3699) from2 pseudomonas aeruginosa pa01
102c3egqB_



not modelled 99.8 13 PDB header:transcription
Chain: B: PDB Molecule:tetr family transcriptional regulator;
PDBTitle: crystal structure of a tetr-family transcriptional regulator (af_1817)2 from archaeoglobus fulgidus at 2.55 a resolution
103c3ni7A_



not modelled 99.8 14 PDB header:transcription regulator
Chain: A: PDB Molecule:bacterial regulatory proteins, tetr family;
PDBTitle: crystal structure of the tetr transcriptional regulator from2 nitrosomonas europaea atcc 19718
104c3bniA_



not modelled 99.8 18 PDB header:transcription regulator
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of tetr-family transcriptional regulator from2 streptomyces coelicolor
105c3fiwB_



not modelled 99.8 18 PDB header:transcription regulator
Chain: B: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: structure of sco0253, a tetr-family transcriptional regulator from2 streptomyces coelicolor
106c2pz9A_



not modelled 99.8 16 PDB header:transcription
Chain: A: PDB Molecule:putative regulatory protein;
PDBTitle: crystal structure of putative transcriptional regulator sco4942 from2 streptomyces coelicolor
107c1z0xA_



not modelled 99.7 15 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator, tetr family;
PDBTitle: crystal structure of transcriptional regulator, tetr family from2 enterococcus faecalis v583
108c3bqyA_



not modelled 99.7 20 PDB header:transcription regulator
Chain: A: PDB Molecule:putative tetr family transcriptional regulator;
PDBTitle: crystal structure of a possible tetr family transcriptional regulator2 from streptomyces coelicolor a3(2).
109c2qkoA_



not modelled 99.7 14 PDB header:transcription
Chain: A: PDB Molecule:possible transcriptional regulator, tetr family protein;
PDBTitle: crystal structure of transcriptional regulator rha06399 from2 rhodococcus sp. rha1
110c2w53B_



not modelled 99.7 17 PDB header:transcription
Chain: B: PDB Molecule:repressor;
PDBTitle: structure of smet, the repressor of the stenotrophomonas2 maltophilia multidrug efflux pump smedef.
111c2guhA_



not modelled 99.7 20 PDB header:transcription
Chain: A: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: crystal structure of the putative tetr-family transcriptional2 regulator from rhodococcus sp. rha1
112c3b6aC_



not modelled 99.7 13 PDB header:transcription
Chain: C: PDB Molecule:actr protein;
PDBTitle: crystal structure of the streptomyces coelicolor tetr2 family protein actr in complex with actinorhodin
113c1bjzA_



not modelled 99.7 17 PDB header:transcription regulation
Chain: A: PDB Molecule:tetracycline repressor;
PDBTitle: tetracycline chelated mg2+-ion initiates helix unwinding for tet2 repressor induction
114c2hxoB_



not modelled 99.7 17 PDB header:transcription
Chain: B: PDB Molecule:putative tetr-family transcriptional regulator;
PDBTitle: structure of the transcriptional regulator sco7222, a tetr from2 streptomyces coelicolor
115c2g7lA_



not modelled 99.7 13 PDB header:transcription
Chain: A: PDB Molecule:tetr-family transcriptional regulator;
PDBTitle: crystal structure of putative transcription regulator sco7704 from2 streptomyces coelicor
116c2vprA_



not modelled 99.7 17 PDB header:transcription
Chain: A: PDB Molecule:tetracycline resistance repressor protein;
PDBTitle: tet repressor class h in complex with 5a,6-2 anhydrotetracycline-mg
117c2y31A_



not modelled 99.7 14 PDB header:transcription
Chain: A: PDB Molecule:putative repressor simreg2;
PDBTitle: simocyclinone c4 bound form of tetr-like repressor simr
118c2hxiA_



not modelled 99.7 26 PDB header:transcription
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structural genomics, the crystal structure of a putative2 transcriptional regulator from streptomyces coelicolor a3(2)
119c2oerA_



not modelled 99.7 21 PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional regulator;
PDBTitle: probable transcriptional regulator from pseudomonas2 aeruginosa
120c2wgbB_



not modelled 99.7 19 PDB header:transcription
Chain: B: PDB Molecule:tetr family transcriptional repressor lfrr;
PDBTitle: crystal structure of the tetr-like transcriptional2 regulator lfrr from mycobacterium smegmatis

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite



Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0